RNA id: XM_043240494.1


Basic Information

Item Value
RNA id XM_043240494.1
length 5555
RNA type mRNA
GC content 0.43
exon number 15
gene id nsmfb
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9137421 ~ 9165718 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGAGAGCGAGCAAAGCAAGCGTGCTGCGCGTGAGCACATTCTGGCGTACTCGCAGCGCTCCCTTCTCATTGCTTGCTGTACCAGCTCAAACTCCGCGCACTGGAGAACAAACTTCACTTAGCGAGATTCAGCTGGACCTCGCGCTCCTAAACATGAGGAGCGAACGGAACATCTGACACAGAGACCCCGGGCGGCAGTTTAAATCCGGGAGAAGAGAGAGGAGATCGTATCTCCACTCGGCGGATGATTTGTTTGCATTGTGCATTTCTTTCCTCCATTGCAGATGTGACGAGTGGAATGAGCTGCTTTTACACACCGGTGGTTTCACTGCAGCATGGGAACGGCCGTGTCCAAGAAGAAGAATTTAAGGAATGATGCGATTTCCTCTGTTGCCGCAAAAGTTCGAGCAGCTCGAGCATTTGGAGAGTacctttctcacacacaccctgAGAACCGCAACGGATCAGaTCACTTGCTATCTGACACCTTCATCGGTCAAGACACAGATTCCCCAGACATCAGCCGACTGAACAACAATAACAGCCTCCAGCCATACTCCCAACACACTCTCACAGTTAAGCCCATTCAAGAAGAGGTGCAGCCAGGCAGCCAGTCTGCTCCCCTTCCTACCAGTTCCAAGCGTCGCCTCTCCGTAGAGCGCAGCCTTTCTTCTGAGGAGCAGCATCATCAGAGGTGTGTAGAGAGCTCTTTAAAGCCAGCACGAGTCTACACCATTACTAGGGAGCGAGATATGCTTGGAGGCCAGGGAAGCAAGGAGAGCCTGGAGCTAGAGGTGCTGAAGAGGACCACAGACCCACCAAGAAGCAGTGCTCCCTCCAGTTTACGTGGGAGCCATCATCGAGGAAGCCATCAACGTGGAAACAACGGCCCTACACACCAGAATCTCTGCAGCCATGCACCTCTGACACAGCCTTTGCAGAGCTCAGGAAGCGCCCATAACATCCGGGACTGGGGGTCGAGACGGAGCAGGTCGAGGGAGGATTGTACGCCGGATTGTGTGGCCTGCATCCGGCCACACTGCCAGAGCCAGCGCTCTCTAGACCTTGAGACTTCACCTCACAGTGGTGGCAAACAGCACAAGAAGCTGGAGAGGATGTACAGTGAGGACCGCGTGTCCTCTGAAGATCGAGAGGATCACACAAACAGCTGGTTCCCTAAAGAGAACATGTTCAGCTTCCAGACTGCGACCACCACCATGCAAGCGGCCTTCCGTGGAAttgcagaaagaaagaggaggaaaagagagCAAGAGGCCACCGCACTGATGGAGAGAAACTTCCGGAAACACCTGAGGATGGTGGGCAGCAGGAGGGTGAAGGCCCAGACATTTGCTGATCGCAAAGCGAAGAGTTTCAGTCGGTCCTGGAGTGACCCCACACCCGTCAAGCCTGACTCTCTCCATGACTCCAGAGACAGTGGAGACCTCCAGGCATCGTCTGGCAACCTGGATGAAGAAGACTGCGATGATGTCGACtgggaagaagagagagaatcAGAAAGAGCAGCTTGTGAGGGCGATGACTTCATCCCACCCAAAATCATGCTAATTTCATCAAAAGTACCAAAGGCCGAATACGTTCCCAACATCATCCGTCGGGACGACCCCTCCATAATCCCCATTCTCTATGATCATGAGCATGCCACCTTTGATGATATACTAGAGGAGATTGAAAAGAAACTCACCGCCTACAGAAAAGGCTGCAAAATCTGGAACATGCTCATCTTCTGTCAGGGAGGTCCGGGTCATCTCTACCTGCTGAAGAACAAAGTGGCCACATTTGCTAAAGTAGAGAAGGAGGAGGACATGATACAGTTCTGGAAAAAACTCGGCAGATTCATGAGCTTATTGAATCCCGAGCCTAACCTCATCCACATTATGGGCTGCTATGTGCTCGGCAATGCGAACGGAGAAAAGCTTTTTCAAAACCTTAAGAGACTGATGAAACCTCATGCCATTGAGTTCAAGTCTCCTCTGGAACTGTCAGCTCAGGGTAAGGAGATGATCGAGATGTACTTCGATTTCCGCCTCTACCGCTTGTGGAAGAGCCGCCAGCACTCCAAACTTCTCGACTACGATGACCTTCTGTGACATTGTGTCGTTGGTTTAAGCAGCCCAAGAGGCAGGTAGCTTTCTTTAGGGCCCACGCGGCAACGTTCCCTCCGAAGAGAGCCTGGGCGGAAAAGCCCTGAGGTTGAAGGAGGAAGATGAAGTTGAGGATGAGGATTGCTGACATTGAGAAGACGTTCCAATTCTCCGCCCTTGGATGTAACGATGGGAAGCAGCCATTACTGTTAGGTGCTGTGTCTTCACCTCATCCATTTGAGCTTTCGGCTTGAAAGAGAAACATTCGGTAGATCTCCGCAGGTCTTAACTTTTAACCTGTGAGAGGTTTAGAAAACAACATTCGGTTTCTTTGAGAATTGAAAAAGCTGTGTTAAGAAGGAggttaaaaataagaacaaatttGTTTTTAGTACTTTTGAGTAGCTGTTTTTGTGGTTAACTAGCAGGAGCAGTGAAACAAGGCCATTTAACAGTGAAAACGCCTTGAGGTAATTGTGTTGTTCACTATTTACAAATGCAGGATAAACTGTGGAACTACATATCTGTTGTATGTACATATTCACTCAAACTCTATAAAATAACTACTGTAATTTATCTTTCAGCATAATATTGCACTGTTTTAGTTgttaatggtgtttttttagGATTCATTAGAGGGAATATAACTCAGGTTTCATTCGTTTAACTGGCCTCCCTCTGTACTGTACCATCTTTAGAtcgagagagaagaagaaagcaaaactttttttcagtagAAAGCTGTTCCGTCTGAGTGGTGTTGAAATAACACTCACGCATAgatgttttagttttctttagACTCGTACTTTATGTGTAAGGAATGTGTAGACGAAGCTCATTTTAGATCGGCAGATTCTGTCCTTTAGCTTCAAGAATGTTCGAAATTTTCTAGCATCTTAAAAAACAACCAcactaaatatgattttaaaactgattCATTTTGACAGTAATATAGACAACGTTACTCAGTTAGTCAGTTTGAGCTCAGATCGTGACATGTTTGCGTATTTGTCTGTTTGTCATATGCGTCTGTAAGTATTTGACGTGATGTCAAGCTCTGTTTTGTGGTGTGTTTTCTTTGTAGGTAGAGGATAACTGATCATTTTCCAATTCTGATAAGTCAAAGTGCAATTGTATCTGCAATATTTCTCTTTAAGTGTTACTGTGAACCCGTTTTGAATATCAAGGTTAGGTTTTTTTCATAGTATACAGGATAGTACATTTAGTCTTTAAAGTGGTTCTCTGTGGAGGAAAATGTTCACGAATCACTCTAGTTGGTGCGTGGGAGTGTTTTGGATGCACCAAACAGATAAAACAGTAGATAGTTGTAATCTTTAATCATCACGAGTGGATGTTCGAGTGCAAAACAGCAGCAGCTGGTGCAATAGACAGTCCAAAGCATTTCGTGAAAAGCTGCCAGATAGAAAAAGTGCAATGTGGTTAGTCTTTCTGGGgtaacaatgcaaaaatgagAAGGCATTGCAATATTTAGTTGAAGCAAATAGGAAAAAGATCCCTAACGTTGCTATATTTAGAGCATAAGAGCTGTTATGAGAGCATATATATCCTAtctgtttgtgagtgtgttttagCTTTAGAGATGCGAACGGGGCACTGAGATGTGAAGGATGCATCTGTGTTTGCCTAGTACGCCATCTTTTCATCTCTGACCACTCATGCAGACGCCctgaaaatcaaataaagcacaaaatctCCGTATCTGTAGGGCCATCAGGGAACGAGTATTTGTTCTGATTAGATCAAATCAAAACAGCCCGACCTCTTCTTCTACTGTTCAGACGATTGCATGTCCACATATGACTTTGTATTTTGCTATCCAAGCTCATCTAAACTCATGTAATCTTATTTCTGCCGAAGCTGTTGTATGCTAAAATGGTTGTAAAATTGCTAGGTGTGGATATGATCCATTGGTGTAATAGAACATAGCGTTTGATTTCTTGTGTGTTGTCACTGATTGAGCCAATGGCACATGAGAACCATAAGGACTCAGTGAGAGCTCTGAGGATCATGGAGCCATCTGGATTGGCGGAAAGGTCTTTGGCACGTTAGGTGTGAAGACCCCCCTACTTTTGCAATAAGATGTTTATTGTATGCCGTATGGCCTGGTGTTGATCGTGTCATGCATCAGAAAGTCATTTCATATATTCATTGTTATGCGTCATGTTTTAGGAAATGAAAGCTGGTGGAAACATGCATGCGTGTCACATTCCCAACTAAACCATTTTTGTGCATCCCTCCAGACTACTTTCTGTAGCAATACACATTGTAACATGAGCTGCTTTGTTTCTAGGTCACACTGTACTGCTTCTAGAACGCTGCTGTTTGAGTACCTTTGTATGCTGTTTATGTTTCCAGCAGCATccgttttatttttaccatGAGCACTGGCTTTGCAGCGCATTGGAGAGAGACATATGATATGTCATTGAGCTTCGGCCAATAATATTTGAAGGCTTCAGGCAGTATCTCTCTGTTGACTGTACAAATTACAGTctgtaaatgatttatgatCTCGAGATCAAGCAGTTAAACTAAATAAGAGCGATgctaattcaattattaataattggtAATCTTTGAAATCGATAAGGCACTAATATGCATGATAGTTAGTTCCCTTTGAAGTTTGTAAAGCAAACCTGAAATCCTGAtatgttgatatttaaaaagaaacatttacagaaTGTTCAAATGGTTCTGGTATGTTTTTGATGTGTTACCTGCTTGGGAATAGAAAATGTCTTCAGGAACCTGATTATTACACCACGATGTCAGGACTGTTACACTGCTTCATATGTAACTTTTTTCCAGTctttaaaaactgaatatttaagttgatgttatattattattgtcctGTGTCTCTGAGCTGGCGTCCTGCTGTTTTATATGGCGTGGTTGATTGGGTTAAATGCTGAATGATTGATAGCATCATGATTGCACTGTTAGACTCCTCGGCTCATGGCGTTTTTAAgagaaatatgtttttgcacACTTTGAGTGTGTCTTTCTCATTTCTGCAAAGCCTAACGGGTGAAACGAATCACTTTTAAGCATTGTCAGTAGCAATGATAATACTTTTAATAGCCTATATTACAAAATCTAGAAAGTCTTAAAGAGTGATGACAGTAAACATATATGGTTTTCTTAGTCTGGCAACATTGCCATTACATACAGTATGACATTATAGTATTAGTTcagttaaatgattaatatttctTAAGCAAATTAGCTCATCTTGTTGATTTGCTATTTTAAAAGACCGAGCATAAGCTCCTAGTTTCTATCTCTTTAGCTCGGTGTTCACAGTATTTACTATGAGACGTataaactgtttgtttttccttgtACAACCTCCACAGCAATGAACACTGGAAATGTTTCCTAAcctgttttacagtaaaatgtaccCAGTTTTAAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50983 lncRNA downstream 76607 9013306 ~ 9060814 (-) True G34594
TU50996 lncRNA downstream 146108 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 146398 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 203282 8933911 ~ 8934139 (-) True G34583
TU50966 lncRNA downstream 204341 8932860 ~ 8933080 (-) True G34582
TU51125 lncRNA upstream 81202 9246920 ~ 9248041 (-) True G34704
TU51339 lncRNA upstream 598355 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 600550 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 611915 9777633 ~ 9778238 (-) True G34877
TU51619 lncRNA upstream 1115691 10281409 ~ 10296141 (-) True G35035
XM_043240456.1 mRNA downstream 113735 9022552 ~ 9023686 (-) True LOC122345922
XM_043240272.1 mRNA downstream 129389 9001907 ~ 9008032 (-) False trafd1
XM_043240271.1 mRNA downstream 129389 9001907 ~ 9008032 (-) True trafd1
XM_043240273.1 mRNA downstream 135866 8999491 ~ 9001555 (-) True LOC122345801
XM_043238146.1 mRNA downstream 139887 8992183 ~ 8997534 (-) True LOC122344627
XM_043240206.1 mRNA upstream 177 9165895 ~ 9168059 (-) True LOC122345763
XM_043240765.1 mRNA upstream 19830 9185548 ~ 9215006 (-) True dnah10
XM_043240615.1 mRNA upstream 49780 9215498 ~ 9220528 (-) True vamp5
XM_043240428.1 mRNA upstream 56836 9222554 ~ 9226598 (-) True vamp8
XM_043238354.1 mRNA upstream 61326 9227044 ~ 9232829 (-) False ncaph
TU50964 other downstream 207368 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 459703 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 705846 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 722615 8411882 ~ 8414806 (-) True G34372
TU50440 other downstream 1415958 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU51091 other upstream 49790 9215508 ~ 9220507 (-) False vamp5
TU51236 other upstream 172110 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1159397 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 1295490 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1702646 10868364 ~ 10874064 (-) True G35371

Expression Profile