RNA id: XM_043240502.1


Basic Information

Item Value
RNA id XM_043240502.1
length 1416
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC122345946
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27391394 ~ 27393627 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTACACCTGCTGCTCCCGTGGGGCTGTTGTCATGGTAACGCGTGTACGCGGGCTGCGAAGCGCCCTCCGGTGCGCGCTAAAACACCCGGGAAAGACCCCGTTTACAAGCACCGTTTCACCTGACCGTACCGCATTCGACCGACGCGAAGCACGCCACAGAGGGATGACGATAACGAGGGGACGTCTTCCAGTACGACCTCCAGTCCTGCAGTAGAGCGTTTCTCCAGAGATGTCTGCGCTGAGTGACTCCGGGATCGAGGAAGATCTGCACGCTTCTCCGGCAGAGACCTCCAGGCTGACCTCGGAGCTGCAGGAGTGTGACTACGAAGAGAGCTGCTTCATCATCCAGAGACACAATGAAGTGCACTTTCTAGCGCTGGACTGCCTCGCGAGACAGCCGCAGATTACAGCAGAAGCTCGCAGTAAGCTGGTCAGCTGGCTCATAGCCGTACACAGACAGCTCAAACTGTCCTTCGAATCATGCTGCTTGGCTGTTAACATCATGGACCGTTTCCTGATCACAACCTCGGTAGCTGCAGACTGTTTCCAGTTACTGGGAGTGACGTCTCTGCTGATCGCCACAAAACAGGTCGAAGTGTATTCGCCTCTGATCACACAGCTTCTGTCGCTTTGCTGCAATTCTTTTACCAGAGAGCAGCTGTGCAACCTTGAATGCCTGATCCTTCTCAGACTCAATTTCAGACTGGCTGCACCTACCCTCGCTTTCTTTCTGGAATATTTCACCAGACACCCTACCGGATACCAGACTGAGGGAGCCACGGATAAGATGGTCGCTACACAGGACAGAAACGTATGGAAGGAGCCCGAGAAATGGTTGGCGTGCAAAGTCTGTGAACTGAGTTTGGCCGACTACACGTTTAACAAGTATATGCCGTCTGTGATTGTGCTGTGTGCCATGAAAGTGGCAAAAGATCTGCTGAAGACGCATTCAGCGCAGCCGACAGACAGCTATGCTGGCTCATCACAGACACTGGAGTCTTTCTGTTTTCAAGAGTACCCAGCGTTTGAAGCTGAGCTTTTGTTTCAGCAATGCACAGAAGATCTCAAATTGTTGGTTGCTCTTAATCAAGACATAGTCCAGGACTTTATAACACCATGAACCATTATTAATATGTTCCACGGAGTGATCAGATTGACCCAAGTGATTCAACTCAAGTGATTCATCTGAAGAAAGTTGCAGAAAAAGATACTGtaataaccatttttttataatgctgttTCCTTCATACGTTTATAATACACATAAAACGATTTGTAATGGAGTCAAGCAGTGTTTATCCCAAAAGCTATTTATGCAAAAGCgcggttttatttttcattcatgtgTAAGTAGTGTGTACCTCGaacttttagaatttttatttgtaaaatcgGATTGTCaatcataaaaaagca

Function

GO: NA

KEGG:

id description
K10861 UDG2, CCNO; uracil-DNA glycosylase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59046 lncRNA downstream 105200 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 124165 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 157232 27232658 ~ 27234162 (-) True G39872
TU59020 lncRNA downstream 165832 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 202172 27188850 ~ 27189222 (-) True G39857
TU59120 lncRNA upstream 144861 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 145313 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 256823 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 354833 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 502016 27895643 ~ 27895961 (-) True G40021
XM_043238855.1 mRNA downstream 1396 27343490 ~ 27389998 (-) True smtnb
XM_043238858.1 mRNA downstream 1397 27343490 ~ 27389997 (-) False smtnb
XM_043238857.1 mRNA downstream 1397 27343490 ~ 27389997 (-) False smtnb
XM_043238856.1 mRNA downstream 1397 27344731 ~ 27389997 (-) False smtnb
XM_043238859.1 mRNA downstream 14238 27343490 ~ 27377156 (-) False smtnb
XM_043240820.1 mRNA upstream 1762 27395389 ~ 27398741 (-) False isca1
XM_043239914.1 mRNA upstream 5786 27399413 ~ 27414999 (-) False tut7
XM_043239913.1 mRNA upstream 5786 27399413 ~ 27414999 (-) False tut7
XM_043239917.1 mRNA upstream 5786 27399413 ~ 27414999 (-) False tut7
XM_043239912.1 mRNA upstream 5786 27399413 ~ 27414999 (-) False tut7
unassigned_transcript_1081 other downstream 1279992 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1281824 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1289985 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1299398 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1301606 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59237 other upstream 495496 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 862201 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2066958 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2223372 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2532758 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile