RNA id: XM_043240520.1


Basic Information

Item Value
RNA id XM_043240520.1
length 10187
RNA type mRNA
GC content 0.48
exon number 11
gene id tet3
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2824171 ~ 2866043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agcagaaagaaaaaggagaatATAGAAAAAGGGAAGGGAGGAGCAGAGAGACATaatgagagagggagaaagagagagacgacAGTGGCGATAGGAAGAGAATCAGAGCGAGTGTGTGCGCTTGGGGGAGGTGTGTATGAcggagtgtgtgcgtgagtgtgtgtgcgttcgtGTGCCGCACTGCCTGGCTGACtgagaagagagggagagagagagaaagaaagaaagaaagaaagaaggactGAAAGAAACCCGTAGTGGATTTCCACCGGCTGActgctgcttgtttttttttttaatttggcacTGTCACGGAAGCCGTATTCCATGCACTTTCTTGTCCACGTTTCCCACCTTTGTCTCTCCAGCGACGTTATTGGGACAGCTAGACCACTAgaggaaagacagagagagagcagaagaaCAGAAGAAGACCCAGGGATCTCCATGGAGCAAAGAATTATGTAGTCTTTTCTCAAATCAGGCAGCGACCATACAGAGAATACAGAGATGAATCAGTCCATGAGGTCAGGACTGTTTCTGTGGTGGGTTCAGTGGATGGCCCCAGAGGAAGAGGCCAGATGGAAATTGGGTCCCATgaccgcctggatgaaggcgTGTTAAACCAGGAGCTGTCTAATGGGCTCAGCAAACATGCCgcaaatgaagaaaatatcTGTGATGAAGAAGTGAGAAGCGTGGGCAGGGAGCAACACCAGCACAACTACCACGAGGGAGCTGGATGTATTTCCCAGACACCAGGTTGGGTCCCTGAGCATGCTGGGAAGTCGAATTCTGAATCTCAACAGGGTGCTTGGAGTGGCCAGAATGCCAGTACACCAGTGAATGATGTGGATATGGAGGATGCACGAACCCTGGTGGCCTTTTCTGCTACCGTTGGCTCACTGCCGCCTTTTACCAACCGTCAACCTTGTCAGACACCTACAGCTCAGCTGTATGAAAGGTTCAACCAGGAAATGTCTAACGGAGGTGAGGAGGGCAGGCAGAAGGGTGTGGATGGTGAGATGTACCCCCCTGAAGATCTAAACACTCTTCAGGCAGCACTGAGCAAGGCCCGTCATGGCCACAAGCCACCTAACTGTGATTGCGATGGCCCAGACTGCCCTGACTACCTGGAGTGGCTGGAGAAGCAGATCAAAATAGTGGTTAACTCCAAGGATAAAGGTTCCTGTAAGATTCCAGGTGCTCTTCCACAGCCGCATGCACAGCACCGCCATGCCCAATCCCAGCCTCAACAATGTGGAGGTAACCCCTCGTGTGTGCAAGATACAAATCCACATCCCCTTGTTAACCAACCTTCTGCTCCTAGACCCTTTGGCCCACCAGCACCTATTCCCTGCTCCCCGAGTGTTCTGTCCATAGCCAAGGAAAGAAATGTTAGCTTGCAAACAGCAATTGCAATTGAGGCTCTAACACAGTTGTCTGCCACTGACCCACAAACTGTTGTTCCTCCAGGCGCATCTTCACCTGCAAATCACCATCAGCATCTGCCAACCTCCTACCCGCAGAGTATGCCACAAGTGGTCTCTTCATCACCTGGTCCTCTTTTGTCTTCTTCTGCTATGCCACAGTCCATCCCTCTGGGACATTATCCTCAAAAGGAGCTGCCATGGGATCAGCAGAGACCTCAGTCTCAGGGTGAGGCCCCTGCATCGAGCGTTTTGTCTAGCCCATCTCACTATGCTTCCACATACCCATCCGCCAAGTCCCCATTTGCAAGCGTACACCCCTCGACCCCCAGTCCCCGACCCCAGCAGTGGAACCAAGGCGTAGCTGGAAGCTGCGAGAAAAGCTCTCCCCGGAACCCATGGATGATGGTGAACACTGATTCCCAGCATCGTTTTGTGAACCCATCCCAAGGCGGTAGCGATCCAGTGTCCGAGCTAAAGCAGCTCCTCGGAGACACCGGTGCAAAGTATACCAACTCAGCCTTCAAGTTCCCACTCCCTCACCCTAGCTTGCAGGACGGTCGCAGGGCCAGCCTTACTCACATCAAGCAGGAGGTGGATGCAAAGGAGTACCTGGGCTCAGGGTGCGCAGTCATGGGCCAGGAAGGGTTGGTAAATGGCCAGCAGCAGTTCCAGGGTCAGCAGTTTTCCCCCACCATTAGGCACTCAACTCAGGCAGCACTACAGCAGCACCTTCATCATAAACGTAACCTCTTCTCTAATCCCCCCGGCTTCAATCCGTTAGCCCCCATGGCTTGCCAGAACCTTCGTAAGTGGTGGCCGCAGACTATGCCAGAGGGTCCTGTAACCATCAAACAGGAGCACAAAGaacccaaaaagaaaaagagcgcTCAGAGTTCTCCTCTTCTCAAGCAGCCAATGGGTGGGCTTTTTGGTCCACTGGGCACACCTCTTCCAAAACCCAAACAGATTGTTATCAAAAAGCATAAACAGAAAGCTTCTCAACCATCTTTCCTCCCACAGAACCAGATTATAGTATCGAAAACTCCCCTCATTTCCCCAGGATGTGCACCATCCCTATCTCAGCTTGCTCCATCTCTACTAGGCATGGAAGCTGGGCTTCCCCCCTCTCAGGTGGCTGAGAGCCACCCAGCTCCAGCTCAATCTCAGGAATCCATTTTGAATAGCAGTAGTGCACCTATCTCTGAAAACGCTCTTTCTTCTTTTACCCCTGTGTCAGTCCCAGCACCACCCACCCAGAAAGTGACAGATTGCTCAGGCCCAGCTGGGTTAAATGATAGCATCCCAACAACCAGTATCACACCTCAAACCTCTACAACACAACAGACTCCTTCTCTGGCTGGCCTCAGTAACCTAGATCCAAAATTCGAAGAGCTTATTCGCCAGTTCGAGGAGGAGTTTGGGGACACCATTTCCTCAGCTTCTGCAGCAGAGACCCCGGAGAATGGCCCTGCTCTGCCAGCGGTGACCGAGTCACAACCAAACTCAGGACAAACCAGACCCGAGTCACCATCCCCAAAGCAGCCAAATAACTGCCCTCCTTTTCCCACAAATAATTCTGAGCCCATGGATGAAGGTCAAAAGGACGTGGCTGAAAGACTGAACGAAAAAACGCCATGGCCATCCGAGGATCTTTGTACTATCAAACAGGAAAGTGAGGAATGTGAGGTAGATGTGAAACCTCCTGGGCAGCCTCTGTCTGTAGCTCAAGATGCATTTCTGGAGCAACAGCACCCCTTCGTCACACCTTTCTCGCCTCCGGCCAAACGTGTAAAGATTGAGTCATCTGGTGGCGTGACGGTGCTCTCCACAACTGCATGTTTGtctgcagacagagagagggcagaTCTGAGTACTCCCACCAAGGATATCTTTCCCTCCTCCCCTTCACTTAAAGGTTTTCTGGAGTCACCATTGCGCTACTTGGACACTCCCACCAAGAACCTGCTGCATACACCTGGAAAAGATACCCAACCTGATTTTCCCACCTGTGACTGCGTAGATCAAGTCCTAGAAAAGGACGAGGGTCCGTATTACAATCATTTGGGATCTGGGAGAGACATTGCATCGGTCAGACAATTGATGGAAGAGAGGTATGGGGAGAAAGGCGAAGCCATTCGTATTGAGAGGGTGGTTTACACAGGGAAAGAAGGAAAGAGCACTCAGGGATGTCCTATCGCTAAGTGGGTGATTCGTCGCGGCAGTGAGAAGGAGAAACTGTTATGCGTCGTGAAGCAACGACCTGGGCACCACTGTGCCAAtactgttattgttgttgtcatCCTGTGCTGGGAAGGTGTGCCCCGTGCTATGGGAGATAAACTCTACAAAGAAGTAACAGAAACCCTCATCAAATTCGGCAACTCCACCAGCCGTCGCTGTGGACTCAACGACGATCGAACCTGTGCATGCCAAGGGAAGGACCCAGAAACCTGTGGAGCTTCCTTCTCTTTTGGCTGCTCCTGGAGCATGTACTTCAATGGATGCAAGAACGCTCGAAGTAAAACCCCTCGCAAATTTAGACTGCAAGGAGAGCACCCCGAAGAGGAGGACAATCTCAGGGATAACTTCCAAAACTTGGCCACACATGTGGCCCCTGTGTATAAGAGACTGGCTCCCCAGGCCTACAGTAACCAGTGTTTAAATGAGAAGATCGCTTCAGATTGTCGGTTGGGTTTGAAGGAAGGACGGCCATTTTCAGGAGTCACTGCATGCATGGATTTCTGTGCCCATGCTCACAAAGACCAGCATAACCTCCACAATGGCTGCACTGTGGTATGCACTCTTACGAAAGAGGACAATCGCAGGGTGGGCACAATCCCAGAAGATGAGCAGCTGCATGTGCTTCCGCTCTACAAGATCTCTCCAACCGATGAATTCGGAAGCGAGGAGAACCAGCGTCTCAAAATGCAGACAGGAGCCATCCAGGTGCTCACTAACTTCCGTCGACAGGTTCGAAAACTTCCAGAACCCGCTAAATCATGCCGGCAGCGTCGGTTGGAGGCCAAAAAGGCTGCGTCGgagaagaagaacaaaaaattgCAACTTACAGAAACCCCAGAGAAGACAATTAAGATGGAGATGAACCACATGGAGTCACCCCACCCTCAGCAAGGCAATAAAGCTATTCCAAAACAGGAGGTGAAACCAACCATCAAAAAAGAGCCTGTCGACCGCTTCCAGCCCTTCAATGGAGCCATACGTGGCTACCCAGCACTAGGGAACGGCAAGACACCCTCTGATCCCCACAGCATGAACAGTTCGTTCTCATACCCTGGAAACTATGCAAGAGGTCGCATCCCTACCAACGGCCAACCTCCTGCGCAGAGCCCCATCAATGGCTTTCACCACAACCTCCAAGAATTACGCTATGGTTATTACAACTACCCTCCCAGTGCACTTTTACCTCCTGAGCTCTTGGGATATGATAATGGAGCCTGGCCCAAAGCTGGAGAAGCCTCTGCCGCACCATTTGACCAGAAGCCAGATGTTCAGTCACTCCAAGCCAAGCTGGCACAGGCCTATCCCAGCCGCCCACAGCAACAAATGGCTGATGCATCCATTCAAGGGTTCCCACACCCTTCCGAGGTTTCCCAGTCTCCTGTTCCACCCAGTCGTACTCCATCCCTGGAGCAGACGCACCGCTCTACGCCCATCATCAAGCAGGAGCCCATGGATGTGCCGCTGTATGATGGCAGATTGGATGGACAAGCTCAAAGCTGCCCCTCCACTCCCAGTACCACACCGAAACCCGAAGGCTGGCCTGGGCACAAACCAAATGGTAGCCTTATCCCTAAAGGCTGGGATGGAAATATCAGACCAGGTCCGACCAATTCACCTTTCACTCCGGACAAGCAGAGGCTCCACCAGCAACACGAACACCCTCAGTATCTTCAGCAGCAACAATGGAATTCCTATTCCTGCCCTAACACTCCAATGCCCTCCCATTCCCCGTCTCCGTCTCCGTCCCCGTCCCTGAAAGCAGGTCCATCGCCTGCACCTTCACACCCATCCACCCCAAGACAGTGGGGTAGCCCTGCACCTAGTCCCCAACCTAAAGCATGGGGTCCTTACGGACCCATAGGTTACGGCAATGGTGGCATAAGGCAAGGCAGTCCGGCTGGTGCTTTCCCTGATAAAATGCTCTCCCAAGCAGGTGAGAATTGTGGCTCTGCTCCTTTGGGACTCCAGGAGAAAGCCTGGAAATCTGTTGGCGGCTCGGCGGCAGGGAACACGCCGTCTCCAGCTCCAGAGGGACGCTTGTTTCCAGACGCTCTGCAAAAGTCAGATAATCAGGCGTGCTGGGACAGCGAGGCAGAGACCCAGAGCGAACGTGACCCTGAGGAGGAAGACGTGTGGTCAGACAGCGAACACAACTTCTTGGATCCCAACATCGGTGGAGTGGCAGTGGCCCCCGCTCATGGCTCGATCCTGATTGAATGTGCCCGGCGGGAGCTTCATGCCACCACGCCGCTCAAAAGGCCTGACCGCTCGCACCCGAGTCGCATATCCCTGGTCTTCTACCAGCACAAGAACCTCAACCAGCCCTGCCACGGCCTGGCTTTGTGGGAGTCCAAGATGAAACTCCTAGCCGAGCGTGCGCGACAGCGGCAACAAGAAGCAGCTCTTTTGGGTCTCTCACAGGAAGACATTAAGGCCTATGGGAAAAAACGCAAGTGGGCGGCTGGATCGGCGAGCCCCTCCCCTGGGCAAACCAAGGACAGACGAGAGGGTGTGGTGACACGGATGGCACCCACACAGCATACCACCACCATGGTCACAGTTTCACCATACCCATCCACACAACTCACCGGTCCTTACAGTCGATTTGTGTGAACTCTTGCAGACTGTCGCCCCCTGGAGCCAGAGATGGGAATAGAAATGATAAAGATGATTAATCTGACTCCTTTACCATTTGCTTTCCCTCTTCTAGCTCCAACAGCTCTCTCAGGCCACCAGAAGGGAGGGAGAATAGAGGATGGGgcacttttttcacttttttttttcttttacctcaAATTTTGGCAGCAGTTTGGGCACTCCCCAAACGGACATGCTGTCTATGGTGCTCTTGCTCTCTCCAACGTGGGAGGGATTTCCATAGCTACCCCTCCTTAAGTGAATTTAATGATCCTAATTATTATTGCtctattatcaatattattacaattgctATTGTTACTGTCAACGTTGATATTACaggtattgttattattatattatgaagatggctattttttattttaatgttattggtTTTTCatcattgttattaatattatgattttttaatttttttgcccTCTTTCGTCTAAGAGGAACCTTCTTTCTTCATTCTCGCTTGTTCATTATGAACATGAGAACAAGctaatcagcatttttttttcgcGCTTTTTGCCTCCCACCCCCACCAGCCTCTCTATATTATTGAAGCGCCTTCACGTCATCGCAAGTCACATTTCTGTGACCGCGTTATGGCATCTTTGCGCTAGTCACTGAACATGTGGCCAAGAAAGAGAGGACCAGACACCAGCTCGGGCCTTTCTGTTTGGTGCCACTCTGATGAAATCTGTAAAGTTTCTCATCCCTTCAAATGGTGCTTCTTTTCTGTCTCAAGTGTCTCTAATTTTGCCCTCACAATACGGAGGCAGGTGCTGGACCTGGGTGCTTTTTAGCAGCAGATGTCAGTCATATATATACAGTCCCGGTAATTGGTTCTGCCATCCACCGTGATTCCACCTGATTGGTGCTGACTCATTTGCCTGCAGTTTCATTGGCCATTCTTCACTACTCATGTGGCATTTTTTAGACTAAGGTGCTGATAGTGCTAGCAAAAATCCACCTTAATCGAACCGCCCTAAAGAGCTGCAGATAACCCACCGAGGGTCTTAAGCATACGATTTCCACGATCCAGACTCAGCTCAAACAGGGAAATCCGAAATCTTCTGCTTCAAATTTTGCAATCTATTAACCCTAGATGTGTTTAGATTGACTGTAAAGTAGAGActtgcactgcaaaaaaaaaatctttgtcttgttttctaaacGCATGACAAGTAAAATGACGAGATATCATTTCCTAAGATCGGAATTTTGTTAACTTTTGCCTAAACAGGTAAAAATATCTCCTAACGGGTCAAGAAATAAGCCTTTGAATTAAGATAAGCTTTCTTACCCCGTTAGCAGGTATTTTTGTGTGCTTCAAGCAAACGCTTAATATCTTGAGTCCTTTTACTGGTCAAGTGAATGCATCTTAGATGTTCATattagaaaacaacaaaaatacttagtaaaaactctttttttgcagtgtgcgGCTGCAGTAGGTAagaaattattatcattatttttaaatgacttgctGCAAAATTTTCATCACGGATGAGTACCTAATAGATGTGTAACATCACCGTATCTGGTTGATTTTTAGACACAGCATAACTGGTCCccttgtttttctgtaaaacgACTGGCCCTGTGTAAACTGAACACGTCTTCCATGTCCTGATATATCTGTGGTTACCCATTCGTGATGGTGATGGTTTTATTGGGATATTTTCTTACCCGCTGCTGGTCACACCCACCAGCCTAACAGACAGAGCACATTTCTTGGAGTTGGTGCTACTATGAGCCTTTACTCTCCTGTAAAGTCGCCCCTCTCGTTACAAGCAGCCCTCCTCTCTCTTTTTGCCCAGAGCGATCACCTATACCTGGAGTTCATGGTGCTTACTGGCAATGCATACGGTTTCAGCTCAGCAGTTCGTGCAAATGCATGCATAACTACATactgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggcttTCTGAACTGGTCAGAATGTATGCGGATGCCTGTCTGTGAGCTGCAGGGCTGCTGCTGGTTTACACAGGGCTGTGAGATGCTTGACGCTCGGAGAGGAGATCCTGGTGCTCATGAAGTGGTCCTAAAGCTCTTTACCTCATGTTGTACAGACACTGGTCCCAGTCACAACatgctacaaacacacacgggcGCTACAGACTGCAGGCTTGCTGCCTACATCCACATTCGTACCtacttttttattcttatttattatgcgataatgatgatgattattgttattgtgatttgttgtcattttatttttatgatgatttCTTTTGTTCGTTTGTTCGTTCATTTTAGAGAAATTGTAAATATCGAAGAGAGgattttataaaagcacttttaatcttgattttaatgagaaaaaaaaaataagaacggATTATTGACAACTTGAAAcctagtttttgttttaatggaatTTTATTGGGAGGGATAGAAAtgtaaatagttaaatatttagGTAAGATTATTTAACTGGTGAGGGATGATGGCCTAATCATGAATGATTCCTGAATTTTTAGTCTTCAGTTGTCTGTATGTCAAGCCGTCAACAACGGGCCGATGTTTTGTCGGTCTTCTCAAGATACTGCTGTCCTTCTTTTCGTGAGTACTGTACTTACACCGATACCTCTGTATAATCATCGTCACCGGCTTCCTCCCCCGCATCTACAGACCAGAAACGAACAGAGAACAAAGAAACCAACGTGAACGTGACACGGTTCGCACGGATTCAGGActcgctttttctttttccgaACGGAGTGAAAgcatcactttttaaaaattggcCGCAGAAGCGAAAAGAGCGACAGCTTTCGGTTCGAAACTCTCGGTAGATCATGTAAagcttattattgttattatcattattgtttatttgattaaatatggtGCGGGGCGAGTCTCGCCGAGCTCCGAGTCTGCactgacattatatatataatcaagaTCGTCACTTGTTCTTGGAGACGCGAGACGTAACCCTGAAGTTGAAAAAGCTGAGTTTTCGAGCAGTTTCATTCACCTAAATGGCTTTTGTACCGTGGTGCTACCCATAGAGTTCACTGTGGAAAAGACTGTTGCTACAGTTCTTCGGGCTCTTAAATTGATATGTGAACTCGTTTCGAGAGGAAACCTATATGGTgctgatcatttttaaatctttttacgCAGTTATTTCTGAAACGACATTTCTGATGATCGCCATTTAAAATAAGCACTCCGTCTGATCCAGTTTCCCTTTTTAGCCATCACCCTAAATAATAGAAATGGTACTTGAACAGCATGATGGCCGGTAGAGGAACAGGTACTCTCATGCTTTTGATGTGAATAGactgttaatttaatattctgGTGCTACCCAGAGAACCATTTTTACCCCCTCcagatattttatacattttgtcattttatggaatatactcattttttttgttgttttactcACGTCTACCTTCGGCCAcggcgtcacacacacacacacacacacacacagacgcaacactctcacacacacacacacacacacactactctaCCCCTCTCTCAGCACTCACTGTTAAGAGTATCAGTCATGCCCAGTTTGAAACATCGAAACGACAAAACAtctaaagaggaaaaaaaaaaaaaagagaaagaaaaaaaactggcagCTACATTCCTTTATGAGTTAAAGATTGTTCTTGGTTCTATTTTTCATGTTGAGTATGCAGTATGTAAAAAGTGTTATCTTTTGTTTGGTCTCTCTCCTTGTAGCTGTATGGTGTATTATGTGAATACATAGTGTATGTGGTAACAGCCACAATACTGTTTTATGTTctaaactaagaaaaaaataataaaaaaaaaaatcaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48421 lncRNA downstream 26572 2749959 ~ 2797599 (-) True G32881
TU48425 lncRNA downstream 49981 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA downstream 53800 2769201 ~ 2770371 (-) True G32884
TU48423 lncRNA downstream 57400 2765283 ~ 2766771 (-) True G32882
TU48406 lncRNA downstream 95364 2652444 ~ 2728807 (-) True G32870
TU48461 lncRNA upstream 93414 2936481 ~ 2936938 (-) True G32906
XR_006251081.1 lncRNA upstream 105417 2948484 ~ 2950332 (-) True LOC122346059
TU48473 lncRNA upstream 139700 2982767 ~ 2984983 (-) True G32910
TU48477 lncRNA upstream 237840 3080907 ~ 3120371 (-) True G32914
TU48486 lncRNA upstream 332652 3175719 ~ 3176249 (-) True G32922
XM_043240111.1 mRNA downstream 214586 2607214 ~ 2609585 (-) True LOC122345702
XM_043239261.1 mRNA downstream 218257 2589701 ~ 2605914 (-) False add2
XM_043239255.1 mRNA downstream 218258 2587579 ~ 2605913 (-) False add2
XM_043240521.1 mRNA upstream 23098 2866165 ~ 2874893 (-) True ap3m2
XM_043240716.1 mRNA upstream 33242 2876309 ~ 2910382 (-) True kat6a
XM_043238144.1 mRNA upstream 157189 3000256 ~ 3012721 (-) False LOC122344624
XM_043238143.1 mRNA upstream 157189 3000256 ~ 3012721 (-) True LOC122344624
XM_043239626.1 mRNA upstream 179782 3022849 ~ 3089522 (-) True LOC122345463
XR_006250982.1 other downstream 218256 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 238745 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 270025 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 801277 2020108 ~ 2022894 (-) False LOC122344636
TU48140 other downstream 856423 1966637 ~ 1967748 (-) True G32676
TU48454 other upstream 92676 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 108395 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 1042358 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 1042483 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 1301860 4144927 ~ 4193081 (-) True LOC122346168

Expression Profile