RNA id: XM_043240521.1


Basic Information

Item Value
RNA id XM_043240521.1
length 2113
RNA type mRNA
GC content 0.51
exon number 9
gene id ap3m2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2866165 ~ 2874893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTATCCTGCCATTGGTTGGAGCGGGTGACAATCACACGTTTTCTCGTCACAAAATAACGGAGAAGGAAGCGACGTTTCTGGTTCTTGtctcattaaagaatcctggaaTTATTAAAGTGTCgggtgggaaaaaaaacgaaacagaTCCTGCCGAGATGATCCACAGCCTGTTCCTGGTGAACGCGTCGGGGGACATCTTCCTGGAGAAGCACTGGAAGAGCGTGGTCAGCAGGTCCGTCTGCGATTACTTCTTCGAGGCTCTGGAGCGAGCCACGGAGCCGGAGAACGTGCCCCCGGTGATCCCGACCCCGCACCACTACCTCATTAACGTGCTCCGCCACCGCATCTACTTCGTGGCCGTGATCCAGAGCGAAGTGCCTCCTCTGTTCGTCATCGAGTTCCTGCATCGCGTCGTGGACACCTTTCagGATTATTTCGGGGTTTGCACAGAAGCGGCGATTAAAGACAATGTGGTGGTGGTCTATGAGCTTCTGGAGGAGATGCTGGATAACGGCTTCCCGCTGGCCACCGAATCAAACATCCTGAAAGAGCTCATTAAACCTCCCACCATCCTGCGCACTGTGGTCAACACCATCACGGGGAGCACTAACGTAGGCGAGCAGCTTCCTACAGGTCAGCTGTCGGTGGTCCCGTGGCGGCGCACCGGGGTCAAGTACACCAACAACGAAGCTTATTTCGACGTGGTGGAAGAAATCGACGCCATCATCGACAAATCTGGTTCCACGATCACAGCAGAGATTCAGGGAGTGATAGACGCCTGCGTGAAGCTCACGGGGATGCCCGATCTCACCCTGTCCTTTATGAACCCTCGGCTCCTGGACGACGTCAGCTTCCACCCCTGCGTCCGGTTCAAGCGCTGGGAGGCCGAGCGGATCCTGTCCTTCATCCCGCCGGACGGAAACTTCCGCCTCCTCTCCTACCACGTCAGCTCTCAGAACCTGGTGGCCATCCCGGTGTACGTGAAGCACAACATCAGCTTCAGAGAGGGCAGTTCTCAGGGCCGCTTTGAGCTCACCCTGGGCCCCAAGCAGACCATGGGCAAAGCGGTGGAGTCCGTCCTGGTGAGCAGTCAGCTGCCCCGGGGCGTCCTCAACGCCAACCTCAACCCCTCGCAGGGAACCTACACCTTCGACCCCGTCACCAAGCTTTTGTCTTGGGACGTGGGCAAGATCAACCCCCAGAAGCTGCCCAGTTTGAAAGGATCTATGAGTCTCCAGGCAGGAGCGTCCAAACCTGACGAAAACCCAACCATCAACATCCAGTTCAAGATCCAGCAGCTGGCCATCTCAGgtCTGAAAGTAAACAGGTTGGACATGTACGGCGAGAAGTACAAACCTTTCAAAGGCATCAAGTACATGACCAAGGCCGGCAAATTCCAAGTCCGGACCTAGAGGGACTCAGTCCTGGTTTGCCCGATCTCCTTTGGGAAGCGTTTCAGGATCATTTCAGGAAAACACCGTACGATAAGACTGTCAGTCGGTAACGGGAGCGATTGTTCTGTTATTAACACTATCAAGTTCACCCGAGTTAAAGGGCCGGTAACTTCATATTCCTGTTTTATTGCGTCCAGTTTTTCACAGCTCTCTCCTTCACGGTACTGTCATGTATTGCTCTGTTTTCTCAAGGTGTCTCATTTCTGCAGAACAATAATCCCTCACGACCATCACAGCCTCCGTCCCCGACGACTGTGTCCGACGCAAACCATttaataatatcttttttttttaaaaatggtcaaACACTGGACTTTCATCTTTTTGTTTACTGTAGCGTGTGTACCTTTCGTTTTCGCTGTTATCGAACTACGCTATTTATTGCCTGTCAAATACTTTAAAGCATAACCGACCGTAAGAGTCCACGGTAACCCTATAAGCGATGCTCGATTGTTCGGTTTTACCCAGAATGCAACGTGCGTTTATGAAACCCGTCCGACCGTCTGAAGCGCAGCTGTAGAAGTTATGATTATGGATGCTGAATGAAAGTAGGAAAtgtgtgcattttgtttttagcttcTGTTGATGTTTCCTTTCCTGTTTGTTTACAGTGCTatgaaatgatgatgatgatgattaaaaacacacacaaaacgtC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12398 AP3M; AP-3 complex subunit mu

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48421 lncRNA downstream 68566 2749959 ~ 2797599 (-) True G32881
TU48425 lncRNA downstream 91975 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA downstream 95794 2769201 ~ 2770371 (-) True G32884
TU48423 lncRNA downstream 99394 2765283 ~ 2766771 (-) True G32882
TU48406 lncRNA downstream 137358 2652444 ~ 2728807 (-) True G32870
TU48461 lncRNA upstream 61588 2936481 ~ 2936938 (-) True G32906
XR_006251081.1 lncRNA upstream 73591 2948484 ~ 2950332 (-) True LOC122346059
TU48473 lncRNA upstream 107874 2982767 ~ 2984983 (-) True G32910
TU48477 lncRNA upstream 206014 3080907 ~ 3120371 (-) True G32914
TU48486 lncRNA upstream 300826 3175719 ~ 3176249 (-) True G32922
XM_043240515.1 mRNA downstream 122 2824171 ~ 2866043 (-) True tet3
XM_043240518.1 mRNA downstream 11072 2824171 ~ 2855093 (-) False tet3
XM_043240517.1 mRNA downstream 11072 2824171 ~ 2855093 (-) False tet3
XM_043240516.1 mRNA downstream 20881 2824171 ~ 2845284 (-) False tet3
XM_043240519.1 mRNA downstream 23098 2824171 ~ 2843067 (-) False tet3
XM_043240716.1 mRNA upstream 1416 2876309 ~ 2910382 (-) True kat6a
XM_043238144.1 mRNA upstream 125363 3000256 ~ 3012721 (-) False LOC122344624
XM_043238143.1 mRNA upstream 125363 3000256 ~ 3012721 (-) True LOC122344624
XM_043239626.1 mRNA upstream 147956 3022849 ~ 3089522 (-) True LOC122345463
XM_043238173.1 mRNA upstream 468666 3343559 ~ 3368707 (-) True gnb1l
XR_006250982.1 other downstream 260250 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 280739 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 312019 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 843271 2020108 ~ 2022894 (-) False LOC122344636
TU48140 other downstream 898417 1966637 ~ 1967748 (-) True G32676
TU48454 other upstream 60850 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 76569 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 1010532 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 1010657 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 1270034 4144927 ~ 4193081 (-) True LOC122346168

Expression Profile