RNA id: XM_043240540.1


Basic Information

Item Value
RNA id XM_043240540.1
length 3542
RNA type mRNA
GC content 0.45
exon number 16
gene id lrwd1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21989945 ~ 21997417 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggtaattattttttaatttgagatttatacatcatacGACATGATTTGTCAGGATAAGACAATAtttgagatgcaactattttaaaatctggaatctgtgACAGTCTTGTTGGcttttgctataaatatacctgCGCTACTTAAGACTCTGGGGtcagaaatgtagaaaataagCATATCAGCCCAGGCAGGCCTCCAACAGgtctaatacattttaatatgtagcCAGGCTGGATGTGTTTTGCCACAGGATCCAGTGGACTGTCAGGTTTtccttgttttatttgatgctttattttgaacagTGGCATgccatatataatgtaattcaaAAGGACCTTATGGTTCAGCAAAGATCCCCTATTATTTGTGagcattttacattaaatcgTTAATTTAAGTTACTTATGATTTCTTAAGACCCCACTGGTTTTTTATGAGTATGTTtgagatgtttatttataagctatttatataaaaatttataattttttgctaGTCATAGCTGCACCCTCATAATGCATGCCACACTCAATATGGCGGAATGGTGACGCCAAAACCAAATTATACGTCAGGCTGGTCAAAGTTCGCCTGTGTTTTGCCGGGAAAACCGTCTGCAGTTGTAGTCCACATGACTTCGGCTATCACATATTTAAAGATCACTTGGCCTGCATGTACATTAGAGAGGTCCCACAGGGCGTGAATGGGCCACTTGAGCTGCATCATTACATAACAATACCACATGCATTGTGCATCTGACACCTAAACATCCAATAGCAGAAGTTTTACGAAGTTCCTGAAACCTGTTATCATTGCAGCCCACCTTTATAAGGTCTGATTAGACACTCAGTACTCAAACATTCACCATGGAGAAAATAACAGAGAAGATACTGCTGGAGAAAAGCTCTCCAAGGACAAACAAACTGGAACAGATCAAGACCCTCAATCTCTCACGCATGGGTCTGAAGAGCGAGGATCTGCCTGTGCCTTTGCTATCTAAACTGTGTAGTCTGGAGCAGTTGGATTTGTCTGGGAACTTGTTGCAGGAGATTCCCAGAGGCCTCTCTCTGCCATCCCTAAAGATCCTTAACTGCTCAAACAACGATATGGAGGATGTAGTCTCAGTGGAAGCCCTGAGAAGCATAGAGGAACTTAGACTAGAGGACAACCTCTACCTTACAgtcaatGATGAGCACAAAGTGATCTTCCTGTTACCTATGCTGAGGATGTTCAATGGGAAGGATATCAGCTCTACGGCCCATCATATTCGGCATGGCAGCACTGAGATCCTTAGGAAGAGGGTGGCTGGCATGTGGGAACGAAGCTTCAGTGTCCCTGATCCCATTACGGCACAAAGTCTGGCTGCTGTGGAGAAGCGTTTCGTTAATGCTGCTTGCACCCAAATCAAATACGGCCCTAATTCCTTGAGCGAATACACAAAGTGGAGGGTTGAAATGATTGCAAGAGAATATTTGAAGACGCTGACGTGCACTGAAGAAGAAAGCAGGGTCACAGACACAACTCCAACAAAGAAGAATGAGGCTCCTGCAGAGAACAGTATTACAAGTCCTCAGAAAAGAACCAGAAACAACTCTGAAGTGGCCGCAGAGGTCAGTCCACGGAAATCAAGTCGGCTGGATAGTGCAGCTCCGGTTGAAGCTAGTCCACGTAAATCCACACAAGTGATGACCACTCCACAGAAGACTGACCCTATGATGGCCAGCCCCAGGAAGCACACTAGACTGTCCAGTGCAGACACCCCAGAGGGCAGTCTAAGGAAATCAAGCCGCCTGGAAAATATTTCTCAGAAAGGTGCTAACAAAGCTGATAGCCCCAGAAAGGCAGCAAAGTCAATCATCTCTTCGCCCATATCAAGACCCGCTAAATGTGAGAGCCCGAGAAAAACAGCTGAAGATCAGATTACAGCTCAACAGAGCAAACAGAAAACCGTCAAAACAGAAACCGACACACCTCTTAAGACCGCCTGTGCCAAACTCAGTGTTCCTCAGGAGCCGGTGAGTCTGCAACCGTTCCATGTCTTGCAGTGTCACAGTCGGAAGGACAGTCCCGACGACTTCAGCACTCAGCTTTGGGCCTGTGCCTTTGAGCCCCCACCGGAATGCGGTGATGTCAGTGGTGGGTCTCGGACAGTCGCCACATGTGGAGGGGAAACACTGTGTGTGATTGACTGCGAGTCAGGGAACGTCCTGAAGAAATACAAGGTTCCTGGTGAGGAGTTTTTCTCTCTAGCTTGGTCTTCGGTGCTGATGTCCAGGACGGGTGGTTCTGCCCGTCCCTGCAATATCCTGGCAGCTGGGGGAAAGAGGGGACGTGTGAAGCTTATCCATCCCAGAGTCAACCTGGCATTTGGAGAGTTTTCTGCCAGTCGACGTGCCATTTCCATTATGCGCTTCAGTCCGCGCAACACTAGCTTTCTCTTCACTGGGACGTATGAAAATAAGATCTTTTTGTGGGACATTGGAAGACTGGATTGTGATTACAACTTTAATGTCAgTAAGCTGCTAATTCTGGAGACAGGCTCCACTCCTTTGCATCTCTCTCTGCTCCCCACATCTCCAGACACACACCTCCTCTCAGGCTGTGATGATGGGCTTTATGTCTTTGATATCCAGCtcagtaaaaacacacagaaaagaaatgaGGAGATGGAGATTGTGTTTCCAGTTTACAAGAAAAAAGGCAAGGAGAACACCTACCGGACTATTGATGGACTGAGCTTTCTGTCAGATGATATAGTGGCATCCAAGAGCCACATGCAGGGCTCTATCTACCTCTGGAGCTGGAGTGCCACGCGGGCGTCTTGGaacagcagaaagaaagaggTGCCTGCTGTTGTGTTGGCAAAGCTGCAGTGGTCCAGCACTGACATCCCATACCTGTCTCTAGCCACCTGTCCAGGCTATGGTTATGTGGTGTGTGGAGATGAGCGAGGCAGGCTGTGGATGTACCATATCACAGACTCCATGATGGAAATCTTCAAGAGTGGAAAAACAATCTCAGCCACTGAGGTGCTGGAGTGGCCATCACCGGTCAGAACTGGAATGGGTGCATTAGAGGGGCCATCTATTAACAGCATTGCCATGGATCCTGATCTACGTTATTTGGTTGCCCTCACTGACAAGAACATGGCCGTGGTTTGGAAGAGAGAAAGTCAATGAGCACAGTTGCTGACATTATTGCTTTGCATTTCTGCACTCAAGCTGAATTAATTGATCATGGTTCTGTAAGAAAAGCAGTTAAAAAGGAAATCAGACACCCTAATTCACCTTCACTTATTGTCTCAAAGATACAATCTAATGTAGTATCATGTTAAATTTGTTTAACTTATTTTTGTAGATGAAAGGCCACTGTTTTGTAACCTCTTTCATAATTGTATGTCTTTCagtattttttcttgtttgttgtagtttttttaaacattgttttatttcagagatTTTCAGAATGAATGGCATTGTTCAAAACATGacttatgtttttgttttaatgaataaaatggtgTCATTCACCATTTTCCTTA

Function

GO:

id name namespace
GO:0071169 establishment of protein localization to chromatin biological_process
GO:0006260 DNA replication biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0031933 obsolete telomeric heterochromatin cellular_component
GO:0005664 nuclear origin of replication recognition complex cellular_component
GO:0005721 pericentric heterochromatin cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008327 methyl-CpG binding molecular_function

KEGG:

id description
K24733 LRWD1; leucine-rich repeat and WD repeat-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56992 lncRNA downstream 113360 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 122484 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 149845 21836313 ~ 21840100 (-) True LOC122345027
TU57036 lncRNA upstream 11469 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 40943 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 40943 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 40963 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 40963 22038380 ~ 22041219 (-) False LOC122344815
XM_043239120.1 mRNA downstream 5726 21967987 ~ 21984219 (-) False bckdk
XM_043239119.1 mRNA downstream 5728 21967987 ~ 21984217 (-) True bckdk
XM_043240128.1 mRNA downstream 22809 21961430 ~ 21967136 (-) False orai2
XM_043240127.1 mRNA downstream 22819 21961430 ~ 21967126 (-) True orai2
XM_043239243.1 mRNA downstream 36919 21925498 ~ 21953026 (-) False ap2b1
XM_043240541.1 mRNA upstream 219 21997636 ~ 21999412 (-) True alkbh4
XM_043240542.1 mRNA upstream 219 21997636 ~ 21999384 (-) False alkbh4
XM_043240544.1 mRNA upstream 2077 21999494 ~ 22001615 (-) True polr2j
XM_043238390.1 mRNA upstream 23250 22020667 ~ 22036314 (-) True castor2
XM_043240132.1 mRNA upstream 47882 22045299 ~ 22116025 (-) False doc2b
XR_006251116.1 other downstream 30061 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 105923 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 105923 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 163840 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 370362 21612688 ~ 21619583 (-) True G38355
XR_006251119.1 other upstream 42484 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1604827 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1754463 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1889886 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 2200288 24197705 ~ 24200496 (-) True G39113

Expression Profile