RNA id: XM_043240542.1


Basic Information

Item Value
RNA id XM_043240542.1
length 898
RNA type mRNA
GC content 0.49
exon number 3
gene id alkbh4
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21997636 ~ 21999412 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAATGTGAGTCGATGGCTGCTGGAGAGATGCAGAACGTTAACTGTGGTTGTAAAGGTATAAGGACATGTTTGAGATGCGAGGCGGAGGAGTCTAAACTACATTTCCCTCAGAAGGACGATCTGTGTCACAGTCAGCTGTCCAAAAGGAGTCGAGTGGCCCTCAACAGTCCTTTGCGTTTCCTGGAATATTTTTGTGGGAGAATTTTGTGTCAGAAGATGAAGAAAGGGAACTGATCACCAGAATGGATGAAGAAGTCTGGAGAGAATCTCAATCTGGCCGACGAAAACAgGACTTTGGGCCGAAGGTGAACTTCAAGAAGCAGCGCGTCCGTGTGGGAAACTTCACCGGCCTGCCTGCTATCAGCCGTCACTTGGTGGACAGGATGTCAAAGGCACCTCAGTTGGCCTCCTTCAGGCCAGTAGAGCAGTGCAACCTCGACTATGATCCCCTCAGAGGCTCTGCCATCGACCCTCATTTAGATGATAGCTGGCTGTGGGGAGAGCACCTGGTCACCGTCAACCTGCTCTCAGACACCGTCCTCACCATGAGTTTAGATCGAGGCTGGGCAGACATGGACGATGGGGAAGTGCGGGTGGCTGTGCGTTTACCACGCAGATCGCTGATTGTAGTCTACGGAGAAGCACGTCATCGGTGGAAACATGCCATCCACAGGAAGGACATTCGGGGCCGCAGAGTGTGCAGCACCTTCCGGGAGCTGTCTGAGGAGTTTCTACAGGGAGGAGAGCAGGAGAAACTGGGCTCAGAGTTGTTAGATATAGCACTGAGCTTTAAGGGTATACCTTCATAAATTGcctttattttgatatgtgAATGCACACACAACTGTAAAGTGATTATTTTTAActcttaatttaaataaatgcatattcttttta

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56992 lncRNA downstream 121051 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 130175 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 157536 21836313 ~ 21840100 (-) True LOC122345027
TU57036 lncRNA upstream 9502 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 38976 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 38976 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 38996 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 38996 22038380 ~ 22041219 (-) False LOC122344815
XM_043240539.1 mRNA downstream 219 21989945 ~ 21997417 (-) False lrwd1
XM_043240540.1 mRNA downstream 219 21989945 ~ 21997417 (-) True lrwd1
XM_043239120.1 mRNA downstream 13417 21967987 ~ 21984219 (-) False bckdk
XM_043239119.1 mRNA downstream 13419 21967987 ~ 21984217 (-) True bckdk
XM_043240127.1 mRNA downstream 30510 21961430 ~ 21967126 (-) True orai2
XM_043240544.1 mRNA upstream 110 21999494 ~ 22001615 (-) True polr2j
XM_043238390.1 mRNA upstream 21283 22020667 ~ 22036314 (-) True castor2
XM_043240132.1 mRNA upstream 45915 22045299 ~ 22116025 (-) False doc2b
XM_043240131.1 mRNA upstream 45915 22045299 ~ 22116023 (-) True doc2b
XM_043240133.1 mRNA upstream 138455 22137839 ~ 22211535 (-) True LOC122345718
XR_006251116.1 other downstream 37752 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 113614 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 113614 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 171531 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 378053 21612688 ~ 21619583 (-) True G38355
XR_006251119.1 other upstream 40517 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1602860 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1752496 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1887919 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 2198321 24197705 ~ 24200496 (-) True G39113

Expression Profile