RNA id: XM_043240544.1


Basic Information

Item Value
RNA id XM_043240544.1
length 807
RNA type mRNA
GC content 0.43
exon number 4
gene id polr2j
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21999494 ~ 22001615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCTGTGCGCCGCGCATGCGCTGTACGCTGCGTGCGTCCGTTAGCGTCGTCGCTGTCGTCTTTCGAGCAGGATGAACGCGCCACCGGCATTCGAGTCGTTTTTGCTTTTTGAGGGAGAAAAGAAgATCACAATAGTCAAGGACACCAAGGTGCCAAATGCATGTCTGTTTACGCTGAATAAAGAGGATCACACACTGGGGAACATCATTCGGTCGCAACTGCTGAAGGACCCTCAGGTGCTGTTTGCTGGATACAAGGTTCCTCATCCTCTGGAGCACAAGATAGTGATCCGCGTTCAGACGACGCCAGACTACAGTCCCCAGGAAGCCTTCACTAATGCCATCACTGATCTGATCAGTGAACTGTCCCTTCTGGAGGAGCGTTTCAGGGTTGCCATCAAAGACAAACAAGAGGGGATAGAATGAAGACCATCACACTCCATTGGATCTCAACAACTAATTCACAGTGGACTGAATTGTCAGTCTTGAGAACTCTTTCTAGAATGGGCTACAGTattcccatttatttattttcatgaaaaattatGAGGACATTTGACAAGCTCATATTACCAATAATAAGAGATCTAGACCAGCTTCTAACAGCATTGAATTTAAGATGTATGGAGTTCTTCCTTCTGTGTTGATTTTCTAACAAAGCATGATGGTATAATGTAATCAACAAATGTGAACATATTTCATCACACACCAGATTTGTGTACATGGAAATAACGTCCTCTTCATCGTCCCACTCATTTGTGatgtaggttttttttctattaataaattgactttttgtaatgaaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function

KEGG:

id description
K03008 RPB11, POLR2J; DNA-directed RNA polymerase II subunit RPB11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56992 lncRNA downstream 122909 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 132033 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 159394 21836313 ~ 21840100 (-) True LOC122345027
TU57036 lncRNA upstream 7271 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 36745 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 36745 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 36765 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 36765 22038380 ~ 22041219 (-) False LOC122344815
XM_043240541.1 mRNA downstream 82 21997636 ~ 21999412 (-) True alkbh4
XM_043240542.1 mRNA downstream 110 21997636 ~ 21999384 (-) False alkbh4
XM_043240539.1 mRNA downstream 2077 21989945 ~ 21997417 (-) False lrwd1
XM_043240540.1 mRNA downstream 2077 21989945 ~ 21997417 (-) True lrwd1
XM_043239120.1 mRNA downstream 15275 21967987 ~ 21984219 (-) False bckdk
XM_043238390.1 mRNA upstream 19052 22020667 ~ 22036314 (-) True castor2
XM_043240132.1 mRNA upstream 43684 22045299 ~ 22116025 (-) False doc2b
XM_043240131.1 mRNA upstream 43684 22045299 ~ 22116023 (-) True doc2b
XM_043240133.1 mRNA upstream 136224 22137839 ~ 22211535 (-) True LOC122345718
XM_043240728.1 mRNA upstream 213724 22215339 ~ 22227188 (-) True tmem248
XR_006251116.1 other downstream 39610 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 115472 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 115472 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 173389 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 379911 21612688 ~ 21619583 (-) True G38355
XR_006251119.1 other upstream 38286 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1600629 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1750265 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1885688 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 2196090 24197705 ~ 24200496 (-) True G39113

Expression Profile