RNA id: XM_043240547.1


Basic Information

Item Value
RNA id XM_043240547.1
length 2300
RNA type mRNA
GC content 0.41
exon number 5
gene id si:dkey-245n4.2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15915364 ~ 15922607 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAACCACATAAAATGATCTTCCTCTTTCTACATCTGTAGATTACAGTCCAGATTTATTTTCCATGAATGTTTATGCTGAAAATAAACGTCCATtacattaatacttttatataacGTGCGCaattggttgttgttgtttccccCCTCTTAGTTAACTTACAATTTTACTGCCTTAACCCCAAAATAGCCGAACAGTAAATTGCCTTTCATAGTCTCTTGTTAATTAGTATTCTGCACTCACTCTTTGAACATTTTCTCTTCATGCGCCATAAATTTCCAGTCTTCTCTCGAGTGAGAATCGGTCGTGCTGCATGGTCCGCTCTCTATCGGGTGGATCAacattgttcttcactctctgCCTTGCTTTCGGGGAATAGCATGCGTGCTGGGACATAATACTTCATTCGCCgtctttatcagaacagatcATAACctgtaaattaaacatttcttatgatTAGTGTTATTGTTGTGCGACGGCACTCGCAGTGATGGATGTCTTTTGGAGAGGATACTGCACTTTTGTTCTCACAACACTTCTTTTTCAAGAAGTTACAGGAGTCCTGTTAAGGAATGAAGAGATGAGAAAGTGTGTACAGGTAAATGAGGGTCAGGTCAGCAGCAGGTTAACCCTGCAAGACTGCAGAGCGGATTTGGATCTACAAGAGTGGAGCTGGAACCCCGAGACACGCTCCATCAGCAACCCACAGACAGGAGGGTGTTTAACTGCTCCTCAGATCCAGGAGCACGAGAGTGTTTGGCTGCAGCCTTGCGGCTCTGAGCAGGAGGATCGCGAAGGCCAGGCCTGGAGCTGCTCTAAAAAGGGTCTCCTGACATTACACGGAAAGGGTCTGTACCTGAGCGTGCGTCACGATTCCTCCAAGGTCTTCCTTTCCAAAGATCGGGGGAAAAGCAGCAAGTGGAGGACTCTGGCTAATCAAACGGTATGCGAGGAGACAGACAGCACACATCACAGCCAGAATGTGTTACAAGATTCTCAGCAGACACTTTCAACTGGACCACGAATCATCACACAAATTCGCTATTGGCATCctGGAAATAATGACCAGACCTCCAAATTAAAGTCCACCGAAACAACACAGACTCCAGAGGCATCAGATAAACCTCAAAGTAGCGTAGAACCGGGTGGGCCTTCTGTTAATGTGTTTACACCAGACTACGGAACAGGTTGGAAAATGACAATGTTGCTTCTGAGCAGTTTGGCCTTGTTACTTGGGCTTGTGATCCTCACTCTTAACATCTACCAGAACAGGAGGAAGAAGACTGTGGTGGTGCTGAAATCCTTCACTCCGACAGGAGAGGCCAGTCTGCCAGGGTCTCCGGTGCCTAGTGAGAGAGCACCTCTAACCCGACACCCTATGAAAACTGCTCAGTCTCCCTCCATCCAACGAGGCGAGATCCTTGTCGAATGGAAAGATGGAACAGTCACCCCACTGTTTGAAACATATCTAACTGACTAAGTGTTGTCTTATAGAAGAAGTGGCTTTGAGGAGCTTGCGTACTATTCCCAAGCAAACTGAAGGtggctaatattttttttttaaataacaaccGTTGTCCAGGGAATCACTGCCAGTTCCGTGATTATTGCCAATTTccgtgtatttatttattaggtaaGCAGCTGTGGgataaagttattaaaagaaaataaagatacaaTTACACAGTCATTATGACAACTTTAGCCCCAGCATATTGATCCGAACCCAGAAGTCTCCGTCTTCTTGCTGTTATCTTTAACATATCTAACATCTTATAATCGCAGACATCTGTTAGGTTTACATAATGCCATCCCTCTGTTGAATTTTGAAAAACTGATGTTGGGTTCTGATCAAAGACAATATTCTGTACTTTGCCAAAAAGACATAAGGTTACGTCAGGTCAAATACAGATCAAACCTAACTAAAgatatattgtataattaaCAACGAATGCTTATGTAagctgtatgtatgtgcatgtaaaaTAGAGAAATAGGAATGTTCTTTAATGGAAAACGATAATACTTTCAGAATATGCCTCTAAAACTGATTCAGTGTTGATGGAAGCCTGAAAGACTTTAAAACAAGTGTTGTGTTTATCAGTAGATTATTCTTGAATTGCATAAGCCTACATCTGCAATTGTTTTTATATCCTGCATACAGCTGTCTTGCTAGTGCGATTAGGAATTAGcttcaaatatatgaaaacgGTTTCtagaaaaaacaaatgtattaactATCACatgtaatatagtaatatttaatgtttccaATAAAGTATTGTTGACATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54728 lncRNA downstream 4491 15906283 ~ 15910873 (-) False G37093
TU54729 lncRNA downstream 4491 15906283 ~ 15910873 (-) True G37093
TU54730 lncRNA downstream 4491 15906283 ~ 15910873 (-) False G37093
TU54731 lncRNA downstream 4491 15906283 ~ 15910873 (-) False G37093
TU54657 lncRNA downstream 50204 15861077 ~ 15865160 (-) True G37058
TU54738 lncRNA upstream 19002 15938120 ~ 15938836 (-) True G37098
TU54726 lncRNA upstream 31213 15950331 ~ 15978740 (-) False G37092
TU54885 lncRNA upstream 411813 16330931 ~ 16332077 (-) True G37212
TU54932 lncRNA upstream 470806 16389924 ~ 16460289 (-) True G37239
TU54933 lncRNA upstream 470806 16389924 ~ 16482086 (-) False G37239
XM_043240598.1 mRNA downstream 36887 15875593 ~ 15878477 (-) True grsf1
XM_043240603.1 mRNA downstream 56029 15857240 ~ 15859335 (-) True cxcl20
XM_043240604.1 mRNA downstream 59585 15854920 ~ 15855779 (-) False cxcl11.1
XM_043240602.1 mRNA downstream 64716 15849821 ~ 15850648 (-) True LOC122345991
XM_043240103.1 mRNA downstream 68331 15846206 ~ 15847033 (-) False LOC122345695
XM_043238846.1 mRNA upstream 95668 16014786 ~ 16066854 (-) False rtkna
XM_043238847.1 mRNA upstream 95668 16014786 ~ 16053902 (-) True rtkna
XM_043238848.1 mRNA upstream 95668 16014786 ~ 16042028 (-) False rtkna
XM_043238849.1 mRNA upstream 98716 16017834 ~ 16066861 (-) False rtkna
XM_043238442.1 mRNA upstream 165700 16084818 ~ 16087410 (-) True smn1
TU54710 other downstream 59556 15854934 ~ 15855808 (-) True cxcl11.1
TU54705 other downstream 68328 15846036 ~ 15847036 (-) True LOC122345695
TU54668 other downstream 187256 15726855 ~ 15728108 (-) False emc6
TU54666 other downstream 187454 15726782 ~ 15727910 (-) False emc6
TU54865 other upstream 335031 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 457390 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 677737 16596855 ~ 16633121 (-) True G37258
TU54999 other upstream 768142 16687260 ~ 16713167 (-) True G37277
TU54996 other upstream 768297 16687415 ~ 16713167 (-) False G37277

Expression Profile