RNA id: XM_043240552.1


Basic Information

Item Value
RNA id XM_043240552.1
length 7443
RNA type mRNA
GC content 0.43
exon number 60
gene id kntc1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25655507 ~ 25708679 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAACGTTCTGGGCGGAGTTTGCTTTCACTTGTTGGGCTACAGATTATATGGAATAATTATTGACTGTTTATATGTAACTGTGCTAACGTAACGTTACATGAAAGATTGTTTGAAAACTTCCACGTCTTTTTGGAcacttttatttcagctggCAGAAACATTTGCGTGTCAAGCATGTGGAATCAAGTCGAACTTCTTCTGAACGAGGATACTAACACAATCCGCCTCTACAGCGATGTTGAACAAGAGTCCGGAAACGCTTTATATCAAGTGGATACCTTGGTTAAACTCTCGTCTTCCGAAAAGGTGGTGTCTAATCCAAAGGTCTATGCCTTCAGCACTACAAATTGCTGCATCATTGTGGCTGACACTGCTGTGGTTCTCTTTGATCCTGGTTTTCAGACTGTTCTGAATCATTTCTATTTTGACACTGTAGTCGATGCAGTTACTACTTGCCCCCAAGGACAGTTTCTTCTGGTTGGAGAGAGAAGTGGAAGTCTGCATATCATCTATGTCCCTCTGAAGAAGACAGTGCTGACCAAAACTATGCACAAACAAACCCCTACTGATGGCGATGAGACAACCTTCAAGAGACTAATACTGAATGAGACACCTGGTTCTAAAGgagtGTATGatctcttttttattattaatgatggtTTCCTACACACATCCAACGTTGCCCTGGGAAAAATCCAGAGAGCGATTGAAAACATGGATCTAGTGACCTTAAATAAGatccaAGATGATATCCTTATGAACTTCTGTTCAACTAAAGAGATTCATGAAGATGGTTGCAAGTCAGCAGGTCTAGTCTGTTTTGGAAGCACAATGCACCTTCTGATTGGGGCTGTTGGTGCCAATGTACTTTCACTTTGGACCATGGTCCCTAAGCAGAAATCATTGTCTCTCTCAAAACTTCTTGACTCTGCTTTTATGTCAGAGGTGAAGAAAATTCAAGTTGTGGATAATTTGATGTATGTTCTAAACGGAGAgggcATGCTCAATTTGTTGGACATTCACTCTTTTGTCCTGCTTTGTTGCTGGCCAGATCAGTACATTGTTGATTTCTTGCTGATATCGGATGGAAACTCCTCATCTATTGCACAGCAAGATGATAACGGCATGAAAATCATGTCCTTGGTTGAAGAAAAGGGTCATGCTAGGAAACTTGTGGTTCAGTCTCTGCCTTCTATGGAGGTTTTCTACTCACTCGAAGTGTCTTCTCAGTCTTGGTTGATCCAGAAGGGAATCAGTATGGACACTATCTATCTGCTGGAGGGAATTTTGGCAAACACAAACAGCAGCCCTGAAGATCCAGTGTCTACTGTTGTGATAAGATGCTTCACAGAGGCGCTGCCAGAGAACAGACTGAACAAACTTCTTTATAAGCACAAGTTTGAAGATGCAGAGAAATTTGCCAAAGCCTTTGGACTTGATGTTGAAcTGGTGTATAAGGTTAAGCTTAATGTTGTGCTGGAAAAGCTTATCTCGGCATCAGGCAGTGATCAAACCCTTGAGTGGCCTAAGCTCATTGAAGAGGCCAAAACCAACCTAATGAAGATCATGGATGAGCAGTTTGTGGTGCAGTACTGCCTGACTGCTTCCTGGCCTACTCTCAGCATAGCTGAAGAGATGTTAAATTACACCTTAAACCGTTTTCCGTGCTGCCAGATCCAAACAGCCCTGGCTAAGCTCGCCACGTTTGCCAACGTGTATGGACCTGGCAACTTTAAGGGCATACCATGGATTGAGTTCTTAAACAGAACAGATTATCTCAAAGACACCTTCGCTCTTCTCAAAGAGGGGAATCTTAGTGGAGCACAATACTTGTGGCTTCGACACGAGGGTGAGTTTGCCAGGGACTTTGATGAAAGCTGCCTTCATGCTCTACTGGGCTCCATTTCGTCTGAcattgcatcacaggaactGAGTCTGTGGTTTAAGGGTGCTGTGGTCCCATTTGTATGGAGAGTGTTGCCCAAAGGACAGaaaatCCTTGCCAGGTGGTTGGACCAACGTGCAAGGAATCTGGAGTTAACAGAGAAGAGTGACTGGCCTCATAATGGACTGGTTCTGGCTGAACTTGGGTTGCCTTCCCTCTGGAGGTCTATGGGTTTGGCTGAAATATGTGGATCAGAGGAAGTGCAAAACCTAAAGTCTCTAGTGGCAAACCTCAGGCAGCTTTGTGACCTCTACTCCAAATACAACTGCCATCTTTCACTGTCTGACTTTGAAAGGGGAAGCACACGTAGTATGGCCTTTTTGATGCTAGATAAAGTTCAGGCCCCAGAGCTGATTCCTGCAGTAATTAAGAGTAGCATTGAACCCTATGCTCTTGAGAATGGATTGGACCTGGACCAGACCCTCTTACACTACATCAAGgACTTACTAGACTGTTGCAGTTCTCAAATCACCTCTCTCTTCACTGAATGGGAGGCTAAAGCTGTGGCTGTACTGCACTGCATGACAGACACTAATaaAGTGATGGATGCTGTGATTGAAATAATGTATAAGGCTGTGGTGCCCTGGAGTGACACCATTGAGAAACTTGTTCAGCAGCATCTGGAGAAGGAACATCCAAAaCAGGAGTTGCTGAGGGAGGGTTACAGACTGATGGAAATAAAGAAACTTCTCAGATGCTATGGTATCCGAAGCTTAGCTCTTTCTAACACTCGGGATATCATGATGCTTGTGAGGCACATTCTAAAACAGGACCTGCCTACCTCTCTTGAGGACTCACTGAAGTTAATTGAGGCCTACAAACTAAACCCAGCAGAGATCCACCATCTTCACTGCATCCATCTCATACAGCATAATAAGAGGGAGATGTGCATTGGCTTGCTGAAGAATCTGCCCCAATCTGAGGCAGAATTTGTGATTGAGCGACTGGCCTGTTGGGCAAGACTTGAACTTCAAGACAAGCGACACATTTCTGAAGAGCAGAAGAAATTACAAATGCTAATATCCCAGATTATGGTTGAAGCTTTGAAATACCTACAGAGCATTCAGACAGATGATGCCTTCAAGAAAACTGAATGCGAGAACCATCTGAAGATGTTTACAGCCATTGCTCATCTACAGGAAGACTTTGACATCTTTTTGACACCAGAGGAATATGACGATCCAGTAGTGAGACATAAGTTCAACCAACAGCTCATCACTGCATATGAGAATGCACAAGCATGGCGGCGCTCAGGAAAACAACACCCTGACAAGCTTTCGAGCAGTCATTTGAATGGTAATTCTGCAGTAGCCAATGATCCAGATGGTAAAACGAAGACACTCTCTACTGAAGCTGGGCTACATCGACTGGCCAGACAGCTACAGAAGACGGAGCAGGAACTTTGGGCAGACCTGGCTCTGAGAGCTCTGGATGCTGGAGATGTGGAGAAAGCTTTACAGATCCTCAGTGAGCTATACAAACATCACTCAAACTGCAGCACAGGACAAGTTCTGTTCAGCACTGCCCAGCGCATTTCTCAAATGCTGGAGGAAAATGTCCCAATGGTTTTGCCTGAAAAGGTTAACCTACCTGCTGTCATCCATGGGCTGGCCTGTCAGGCTATTACAGTCTGCCACAGTGACCTTCTGCTGGACTGTTTGGAGCTGTGCAAAAGCACCAGAAGTGCGGCAGATGTGTACAGACAATGTCAGATTGAAGATTTTGGATTTTTTGCTAAGgaatcTTCAATGAGTGGTGAAGAAGATGCGTACATTGAATCACATTTTCATGATGTCTTTAACGAGGACTGCATCGTGCTGGATCCAGTCTCAGTGCTGCCACTCCAGTATAAAATCACCAGAAATCTGTTACCACTGTCAGAACTGAGGCTTTACCCTTTTGATTGTTCCTGTCTATCATACTGTGCTCTCAAAGCAGGCACTGATTTGGTCGGGCCTTTGCTCAGTCCCTTGGCCTCTATGCTGCAAATGCTGCAGGAGTGCAGTCAGCTAGAACTGGCTCTTCGACTTCTGATGGAATCTTACAGCAGCATATTAATGCACTTTGTTTCTAACAACATGGATATCTCTCTAAGCATGCGGCTACAGTCTAACAACCGCATGGCCAGAGACAAACAGACTCTTGATGGGATAGAGAAAACTGTTCTCTCATCTGTCACTGTGGTTGTGGTCTCCTTGTTACAGAAGGTGCTCAACTGGAAAGTGGTCGACTCTGATTTGGCCATTGGGCTTTGTACCGTTTTGCCCAGGACAGCAGTTGTGGATATTCTATGGAAAATGATCACCAGTGCCTGGCAAAATTATGAAAAGATTAAGGTTGTTGCTATGGTGGGGGCCCATCTAAGTTTTTTGTatgaggatgaagaggaaaGGGGGAAGTTTCTGTCTGTTATCACTGATGCAGAGTGGGGCATTCAGCTTAGCAAACTCGGGGTTTCCATCCAGTCTGTGTTTAGGCAGTGCGCAGAAACTAAGAGAAACTTGATTCCTACacttgtgaaaaacaaaaatattactccTGATATCATACTGCATTACTGCAGCACATTTGGATTGGACAGTGGTTCTGCAATCAATTTGTACATAACCACTCTACTGCTACAGGAGGACAGGTGGTATGAAATGGAGATTGAAGAAGGTGATGCTAAAGGTACCCTGCAGGGTGAAGAGTTACTGTTGGGAAAAGATGACTTGCTTGAAAGTGCCCTACAAATTATTCCTCAGCTTGGCTCTACCAAAGACCTTGTGATCAGTCTCAACACAGCCTTGACCAAGCTAAATCCATACAACTATGAGTGGATAGAGAGAGTACTCAGAACTATTCAGACAGCTGATGAAACTACAACCCTTCTACCCCTCGGTCAGatggTGGGATTACTCcagcatttaaagtcacataGAAGAATCTCTCCCCCCACTGACCTGGAGAGCTCATACCTTTTGGAAAATGGTCTTGAACCCACTGCTCTAGCTAACACCCGCCTGCCCTTTCATCTGTTCTTCCAGACCAACCATGCTTTCTGGAAAATTGTCTCTCCAGAACTTAGTGAGGGCACTTTACCCACGCTACTTCTCATCTGTAAATTAATGAAGGTTAATCCTGATAAGCTGTATGTTTTAGCTGTGAACCATGTGTTCAAGAAGAGTCTCTTGCCTTTGCTAACGGATCAATCAAAGAAAATCCAGAGTCTTAATCCCAGTAAAGAACTGTCCAGTGTGACTCAGAGTATCTTTAAGTATGCACTGTGCATTCAGAATCTGGAACTTGCTGCAGCCACAGTCCATAAAATTGCGCAGGACCTTCCTGCAGGTGCACAAAAGACAGATTTCTTAAAGTTCAGTTTGGAGCTTGTACACAAGTTACTGCAGTCTGATTCTCTGGAGGAAAATTTACAGGCGCGAGGTGAAGCACTCATCTCTAAACTGCAGCTGCAGTATCAGCGCTCAGCCACGGAGAATGCTCTTATTTCATCTCAGCTCAGCTCTCCAGAGCTCCTCAAACTCACAGGACTTCCTGGTCGCCTCATTGTAGCTCTCTTTGAGCATAGCTCCGTGCTGGACCGTATGAAAAACCCTTCTGGTCTGACTTACCCCGACATTCACAGCGTGGCCAAAGATATTGCCTCCATCAATGGTGTTGATCTTTTAAAGATCCGGAACATTCTTCTGGAGAAGTGGTTGTGCCAAACAGCGCAGTCAATTGGCAAGGACATAAATCATCAGGACCATGTGACTGATATAAATGATGACCCTGACCTCATGAGAGTTGTTTACTTGCTGCAGATGCACCCTATGGATATAAGTGCACGATTGCTCAGCCCCATCTTGACAGCACAGACATGGCCCCTGGGAGGATCAGGCCTTCGCTTGACCTTTGAACATCGCAGCCGCGCTCTTCTCTGTCTCACTCACTTAGCAGATCCTGCTACCTTGGAGGCACTTTCCAACCAACCTAGTAGCAAAATCAAATATTATTTGAAGTGCTACATGTACCTTGCCCAGATGGAGGCCCTGAACATTCCCTATACCTTGGAAATGTTCATCAGCAGCCCTAAGGAAGGCATGATCAAGGGTTTATGGAAGAACCACAACAATGAACCTCAGGCTGTCAGGCTTGTTGCAGAGCTTTGTTTGGAGTATGAGGTTTATGACTTGCAGCTATGGAACAGTGTTTTGCAAAAACTCATGTCGTTCAATATGACAAGCTATTTGCAGAAGGTTCTTGAAGCCCTCATAGCAGTGCCACATCTTTTAGAGGGGCAAAGTCTTTCTCGGATATGGCGGAGTGTGATTCAGGCTCCTTTCTTGACagCCTCTCTTCCTCTCAGCCCTAGACAACATGATGTAATGTATAAGACATTTGTCCTGCTTCTAAAatgtccttttttatttactttggaTCTGGTTGCTATTGCCAAGCGCTTTTCTCAGTTCAGCCTGCAGGCCTTCTCTTTGGGAACTCTCTTGCTTATACCTTGTGCCAAAAAGAAAGAACCACAGATTCAAAACTTCTTGTTATCCTGTAATCCTACACTGATTCTGGACCAGGTAGAGGAAAGCATGACTACTGGGGAGTTAGCTGGCATTCCTTCACAGattagAGACACAGTGTTTACCTTCCTTTGTCGAAACGGCAAGTCCCAAATGTTGATGAAAAGCAAACACTTCAGTTATTTGAAGAGGCACTTGATCTCAAAGGGTCACTCTGAAACAGTGCAGGAGCTGCTGAACTGTCTGGTTGGGCAAAATAGTGAAGAGGAGGCAATTTCTTTTGCCAATGAATATCTGAAATACAAGGAGCTGAAAGGAAGTCAAACGTCATCTTTGAGCAACACTTTGTCTGATCCTGTCAGGGAATTTTTGGAAAAGGCCTTGGAACCCAGGGTTACACAAACATTggcataatatttaaattccaCTATTTATCTGTGGGTAATAATATAGACAACCCTGCACTAATCAAACATATGCttgcacattttgcatttaatgttgTTACTTAATAGTATTTCAGTactaatgttttgtgaatataaaCAACAATctactacaaataaaacaattacatttttttctagatGTGTATGTGAATGTACTGTATCTAGCAaggcttgtttaaaaaaaagatatacacAAAGACTGTagtcaatattttcattttagatctGATTCCAATTCTATAAGattaaaatgatctgaaaaGAGCACAGGTAAATTGACTATTTTTGTTTGCACTGcagcaacacaaaaaaaaaacagatgtcaAACTTGATACAATTTCACACATAACTCAAAAATGGACTGGACAAAGTTATTGGCACCTTGTCAAAATTGTAAgaaataattgctttaaaagCATGTCATGTTCCTGTAATTTGTATATAGACACACCTGTGGTAAGTAATGGACGTGAGCAATATAGGAATCACACCAGTTAAAATAGAGAAAAGTTGACTCAACCTTTGTTTTGTGTGTC

Function

GO: NA

KEGG:

id description
K11577 KNTC1, ROD; kinetochore-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58435 lncRNA downstream 72493 25582339 ~ 25583014 (-) True G39514
TU58427 lncRNA downstream 96289 25558875 ~ 25559218 (-) True G39506
TU58424 lncRNA downstream 97985 25557296 ~ 25557522 (-) True G39503
TU58411 lncRNA downstream 126396 25528883 ~ 25529111 (-) True G39490
TU58391 lncRNA downstream 201673 25453512 ~ 25453834 (-) True G39470
TU58518 lncRNA upstream 19558 25728237 ~ 25728470 (-) True G39572
TU58520 lncRNA upstream 74300 25782979 ~ 25783591 (-) True G39574
TU58525 lncRNA upstream 409795 26118474 ~ 26119083 (-) True G39579
TU58531 lncRNA upstream 444786 26153465 ~ 26153703 (-) True G39585
XR_006250952.1 lncRNA upstream 663940 26372619 ~ 26373822 (-) True LOC122344941
XM_043240061.1 mRNA downstream 4499 25618111 ~ 25651008 (-) True hip1rb
XM_043238566.1 mRNA downstream 86893 25563039 ~ 25568614 (-) False LOC122344921
XM_043240268.1 mRNA downstream 131670 25470652 ~ 25523837 (-) True LOC122345798
XM_043240267.1 mRNA downstream 208847 25303475 ~ 25446660 (-) False LOC122345796
XM_043238251.1 mRNA upstream 823656 26532335 ~ 26544513 (-) True LOC122344705
XM_043238939.1 mRNA upstream 845027 26553706 ~ 26566423 (-) True LOC122345107
XM_043240170.1 mRNA upstream 882246 26590925 ~ 26610395 (-) True LOC122345741
XM_043238546.1 mRNA upstream 906463 26615142 ~ 26625016 (-) False kat5b
XM_043238543.1 mRNA upstream 906463 26615142 ~ 26625008 (-) True kat5b
TU58432 other downstream 86821 25561974 ~ 25568686 (-) True LOC122344921
TU58333 other downstream 373221 25281886 ~ 25282286 (-) True G39413
unassigned_transcript_970 other downstream 660275 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 663412 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 722529 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_987 other upstream 168992 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 178679 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 179835 25888514 ~ 25888596 (-) True trnal-aag_30
unassigned_transcript_990 other upstream 181749 25890428 ~ 25890510 (-) True trnal-cag_28
unassigned_transcript_991 other upstream 183650 25892329 ~ 25892409 (-) True trnal-cag_29

Expression Profile