RNA id: XM_043240558.1


Basic Information

Item Value
RNA id XM_043240558.1
length 4022
RNA type mRNA
GC content 0.52
exon number 27
gene id sympk
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21856983 ~ 21867039 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAGCGTCAGTGCTAACCGattttatcgTGATGGCATCAGGAGCGGGGGAACAAGCGCACGGGAGCGCGACCTCCCAGTTGTACACCAATGAGAACGACACAGCCTTTGACATGACCACCAGCGAGAAGGTGGTGGAACTGTTAAACCAGGCAGCCCTCATCTCTACAGAGGAAAAGCTTATTGTTCTCAAACAGgtgCAGGAGTTGATTATTAACAAAGACCCTTCATTGCTTGATAATTTTCTGGATGAAATCATCGCGTTTCAGACTGACAAGTCAATTGAGGTGCGAAAGTTTGTCATTGGATTCATTGAGGAGGCATGtaaaagagACAATGAGCTTCTGCTGAGGCTGATAGCcaacctgaacatgctgatgaGAGATGAGAGTGTGAATGTGGTGAAGAAGGCCATTCTGACGCTCACTCAGCTGTACAAAGTGGCTTTACAGTGGCTGGTGCGCACAAAGGGTGTCTCGGACATGCAGGAGGCATGCTGGGACATGGTGACCCAGATGAAAGAGGATGTTCTGGCATTACTAGACTCTGATAACGATGGAGTTCGCACTCACGCCATCAAATTCACAGAGTCTCTCATCATCACTCTGTCGCCACGGACACCTGACTCTGACACGCCCAAGAAACAGGAGGGAGACATCAGCCTGGACAAAATTCCCAAAGACCACACGTATATTCGATATGACACGTTGTGTGACGAGGGAAAGTTGGCTCTGGAGCAGTTGTTAAAGTTTATGGTGCACCCCGCCATCACCAGCATTAATCTCACCACTGCACTGGGATCACTGGCCACACTGGCCAGACAGCGGCCCATGTTCATGTCTGAGGTGGTGCAGGCATACGAGACGCTGCATGCTAACTTGCCGCCGACTCTGGCTAAGTCTCAAGTGAGCAGTGTGCGCAAGAACCTGAAGCTGCACTTGGTGTCTGTGCTGAAGCACCACAGCAGCGTGGACTTCCAGGGCCAGATTTCCACCCTGCTGCTGGACCTCGGCATGTCTCAGAGTGAGATCACCCGCTGCACGCCAGCCACCGTACAGCCCCGTAAGAGACTCCACCATGAGCCCTATGTTGAGGGCAAGAGGATCAAGATGGAGGCCACTCTAGTGGAGGATGACGACGATAAAGAAGAACCAGCTCCAGTTGTCACCCCAAAACCATCCTCCTCCGCTGGCAACCAATCAGCCATCGATCTCACTGCTGAGTTCCTATTGCCTCTGCTGAACCCAGAGAATGTGGCCAACCTGGTGCTCATCAGTATGGTTTACCTGCCTGAAGTGATGCCAGCCTCTTTCCAGGCCACCTACACACCTGTAGAGTCGGCCGGCACTGATGCTCAGATCAAGCATTTAGCCAGGCTGATGGCCACACAGATGACTGCGGCTGGACTGGGACCAGGCCTAGAGCTGTGTAAGGCTCGAGATGAAGAGATGAAGGAGGAAGACAGTGGAGCAGGTGAGTCCAGCTCCAAAGACCCTCTCATCATCCGCAAACTGTCTGCTGTGTCCCTGGGTCAAGCCATCTCAGTGGTGGGGGCACAACCAGCGGCCTATAAGAGCCCCGTCACTGAAGAGGCACCTCAGATCAAGAAGCTTCCTGAGCCCATACTGCCCACCACACAGTCCAAGGCTCCAGGTGCTAGTggcagaaaaaaagtgtttaaattggCCGACGTGGTGCAGCCGTTTTCAGAGGCTCAAATTGAGAAACTCACCAACATGGCCATCAAACGGATCCTCCAATCAGAAAAGGCCATTGCACAGAGCGGGATGTCCCATgtCCGTGTGAAGCTGCTTGCACGGTTGGTGACCCAGTTTGAGGGTGGAAAGAAAAATGACTTGTTGCAATTTATTTTGGAGGATATGCGGGGCAGAAGTGAGCTGGCCTTTTCTCTGCTGTTTCACGAGTACAATGAATACCTGAGTCAAGAGCCCTCTGGTTCTCTGGACAGCTATGAGCACTGTCTGTTCACGCTGCTGTCCGGCCTGCAGGAGAAACCTGAGCAGAGGGATGGGCTTTTCACCAAGCTTGTGTTGGAGGCTCCGGTCATTACAGATTCAGCACTGGAGGTGATTCAACGCTACTGTGAGGACGAGtcaCGCGTTTACCTGGGCATGTCCACATTAAAGGAGCTTATCCTCAAACGCCCCTCCAGACAGTACCAGTACCTCAATGTCCTTCTGAACCTCAGCTctcatgaaaaagaaaagGTGCGGTCCACTGCTCTCAGCTTCATCAAGCGGATGTATGAGAAGGAACATCTGAAGGACTGCATTGAGAAGTTCGCTCTCACCTACATGCAGTTTCTGGTCCACCCAAACCCACCTTCTCTTCTGTTTGGAGCAGGAGAGGACACAGAGGTGGCGGCTCCCTGGACAGAGGAGACGGTGCGGCAGTGCCtttatctctatctctctctccttccccTCAACCATCGTCTGGTGCACGAGCTGGCTGCTGTCTACACCGAGGCCATCGCCGACATCAAACGCAGTGTGCTCAGAGTCATCGAACAGCCTatAAGAGGAATGGGAATGAGCTCTCCTgacctgctgctgctggtggAGAACTGTCCTAAAGGAGCAGAGACGCTGGTCACTCGCTGTCTGCACATACTCACTGACAAAGTGCCTCCATCTCCTGATCTGGTGGAGAGAGTGAGGGATCTTTATCATAAGCGAGTGCCTGATGTTCGTTTCCTCATCCCAGTTATCAATGGCCTGGAGAAGAACGAGGTGATCCAGGCTCTTCCTAAACTCATCAAACTCAATCCCATCGTGGTGAAGGAGGTGTTCAACAGACTGCTGGGCACTCAACACAGTGAGGGCAGTTCCTCCATGTCTCCGCTCACTCCTGGAGAGCTCCTCATCGCCTTACACAACATCGACTCCTCCAAGTGTGACATGAAGTCGATCATCAAAGCCACTAACCTGTGTTTTGGGGAGAAGAACGTGTACACCTCCGAGGTGCTGGCCGTGGTGATGCAGCAGCTTATGGAGCAAACCCCTCTCCCCATACTGCTGATGCGTACAGTCATCCAGTCCCTCACTATGTACCCCCGCCTGGCCGGTTTCGTCATGAACATCCTCGCCCGTCTCATCCTCAAACAGGTGTGGAAGTATCCTAAAGTGTGGGAGGGCTTTGTAAAGTGCTGCCAGCGCACCAAACCCCAGTCCTACAACGTTCTCCtccagctgcctcctccacaACTGGCTAGTGTGTTTGAGCGCTGCCCGGAGATGAGGGAGCCGCTCCTGCAGCACGTTCACTCCTTCACCCCTCACCAAcAAGCCCACATTCCAGCGTCTATAATGGCCGTTCTGGAGGCCAACAGCAGGAAGCCAGAACCAGAACCACAACCTGAACTTCATCATCCAGAAATAATAGAAGAGAGAGAGGTACCGGTACCAAAGCATATACCAATGCCTGCACCAGTATCACAAGCAGAACCTCCAGCCCCGACTGCCATAGTGTTTGCTGAACCACcacctcaacaacaacaacaacaacaacaacaacaacaacagatcCCAGCCACGAGGGAAGAAGAAGAGCCCATGGAGCAGGGGGAGGCAGACCGAGCACCTCTGGAGGTCATGTCTGAACCCGCGCCGCAGCAGATGGAGGTGTCTGAGGAGGCTTCACAGTCCAACTCCGTTTCAGAGAAGACGGAGGAGCCCATGGAGGAGTCCGCTGCCGTGCCTGTGGATGAGCCTGACCAACCCAAAGAAGAGGCTGAGGATGTTCTTCCAGAGGCAGAAGAAAGCAGCGTGGACTGATGCCATGTGAAATAAGACTGAATGCTGGAAGTACTGACTCTGAGAAGAGGTTCTATATTGCTTTGTTCAGTGTACTGTGTATCTGTAAGttagaagtaaaaataaatattttggttaatttctttagaGGCCAAGAGTTGATTGTGTATGTGCCACCGTGTTTTCATTTctagaataaaatgaaatctcCAACCTGTAAAAATGAGGAATAAATTATTGGTCTCTA

Function

GO:

id name namespace
GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250963.1 lncRNA downstream 16883 21836313 ~ 21840100 (-) True LOC122345027
TU56981 lncRNA downstream 17310 21839359 ~ 21839673 (-) True G38515
XR_006250964.1 lncRNA downstream 19378 21836313 ~ 21837605 (-) False LOC122345027
TU56972 lncRNA downstream 27251 21827615 ~ 21829732 (-) False G38510
TU56968 lncRNA downstream 27276 21827323 ~ 21829707 (-) True G38510
TU56990 lncRNA upstream 281 21867128 ~ 21867461 (-) True G38521
TU56992 lncRNA upstream 768 21867615 ~ 21876585 (-) True G38523
TU57036 lncRNA upstream 142039 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 171513 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 171513 22038360 ~ 22041263 (-) True LOC122344815
XM_043238738.1 mRNA downstream 440 21852579 ~ 21856543 (-) False rsph4a
XM_043238737.1 mRNA downstream 442 21852568 ~ 21856541 (-) True rsph4a
XM_043238729.1 mRNA downstream 7899 21842311 ~ 21849084 (-) True si:dkeyp-117b8.4
XM_043238730.1 mRNA downstream 9101 21842311 ~ 21847882 (-) False si:dkeyp-117b8.4
XM_043238734.1 mRNA downstream 22661 21829709 ~ 21834322 (-) False ehd2a
XM_043238398.1 mRNA upstream 10234 21877081 ~ 21884022 (-) True LOC122344823
XM_043238785.1 mRNA upstream 19160 21886007 ~ 21896079 (-) True hnrnpul1l
XM_043238786.1 mRNA upstream 19160 21886007 ~ 21896028 (-) False hnrnpul1l
XM_043238440.1 mRNA upstream 42927 21909774 ~ 21922073 (-) True LOC122344852
XM_043239243.1 mRNA upstream 58651 21925498 ~ 21953026 (-) False ap2b1
XR_006251046.1 other downstream 30878 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 237400 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 487935 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 920890 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1729593 20125589 ~ 20127390 (-) True G38140
XR_006250934.1 other upstream 11309 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 11309 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 92938 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 173054 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1735397 23602244 ~ 23604733 (-) False LOC122345364

Expression Profile