RNA id: XM_043240585.1


Basic Information

Item Value
RNA id XM_043240585.1
length 613
RNA type mRNA
GC content 0.58
exon number 3
gene id LOC122345984
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10690779 ~ 10701390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCGGCCCCGGCAGGATCGTGTCCTTTCTCACCGCAGTTCCGTGCTTATCCTGCAAAcagcagcggcggcggcggcggcggcatCATCAGTCTGCGGCAGTGGACCGGGGCAGGAGGAGCGTGAGCATGAGCGAGCAGGGCAAGAGTGCCGCGTCCACGCCAGCGAGCGGGACACCGGCCCCGGGCTCGGACACCTACAAAGGCTGGCTCTTTAAATGGACTAACTACATCAAAGGTTACCAGCGCAGATGGTTCGTGCTCAGCAACGGACTGCTGTCCTATTACAGGACGCAGGCAGAGATGGCCCATACGTGCCGCGGCACCATCAACCTGGCCACAGCTCACATCGACACCGAAGACGCCTGCAATATTGTTCTGAGCAGTGGGGGGCGCACTTACCATCTGAAAGCCAGCACAGAGGTGGAGAGGCAGAGATGGGTCACAGCGCTGGAGCTGGCCAAGGCCAAAGCCATCCGAATGATGAACGATCAGTCCGGGTTGGTGTGTAGTTCAGAGTGTTTGCAGAAAATCACAGGGCTCAGCAATAAGAATTTTCTTCTTCCGGTCCAGTCAGGAGAGCAAATTTACACTGGCCATGTCATTTGATTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51689 lncRNA upstream 143267 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 357084 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 360570 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 363431 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 364178 10325866 ~ 10326714 (+) True G35040
TU51833 lncRNA downstream 112067 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 136622 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 243666 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 435662 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 435662 11137052 ~ 11147242 (+) True LOC122346180
XM_043238395.1 mRNA upstream 3854 10673979 ~ 10687038 (+) True rasl10a
XM_043239224.1 mRNA upstream 18322 10647615 ~ 10672570 (+) False ap1b1
XM_043238157.1 mRNA downstream 16141 10717531 ~ 10736059 (+) True osbp2b
XM_043238726.1 mRNA downstream 48011 10749401 ~ 10754264 (+) True trmt2a
XM_043240168.1 mRNA downstream 61049 10762439 ~ 10768631 (+) False tia1l
XM_043240167.1 mRNA downstream 61051 10762441 ~ 10768631 (+) True tia1l
XM_043240169.1 mRNA downstream 61226 10762616 ~ 10768631 (+) False tia1l
TU51450 other upstream 572766 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 891534 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1819374 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2386741 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2680293 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 27728 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 225433 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 345090 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1222838 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1547748 12249138 ~ 12255672 (+) True G35720

Expression Profile