RNA id: XM_043240589.1


Basic Information

Item Value
RNA id XM_043240589.1
length 7044
RNA type mRNA
GC content 0.47
exon number 9
gene id si:dkey-215k6.1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5169712 ~ 5333504 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTCACGCGCTTCCCGCTCTTAGCGCTGGAGCACCAGCTTGACTGTTGGCCTTTCCGTCTCAGGAGAACTACGCGAGTAAGTTTCTTTGAGGGAAAGCGCAGATAAAAATCAGACATGTTAACGCAAAAGCAGCGTCAAAGGAGCGATGGGAACATTTCAGAGAGAGTCAGCGGCGACCGCCGGTGGTTTTGCGCTCCCGTGCGCCGAGAGACGGATTCGTAGGACGCGCGGAGAACATCACCAACTTCTGCGGCGCGTAACTTCATAACGCCACCGGTCCGGACCTCTATACTTGCTTCAAACTTTTACGCGTTGAAGGAATAATAGCACCAGGGGAACAATGACAGTGACTTTCCCTGGCGTCTAACATCGCCGCGTCACTTTAGTGAAGCGTTTGGTTCTCGTTTCTAACGGAATTTTGGCGATAGTTAAAGGACACGGATTTTTGGGGACCGCGACGACGCCAGTCAGTTACATTATCGCGTGACTTTCCACGGgattatgttatttattccaCAACTTCTCAAACTAGACCGTTCGCAATGTCGCGTTTAAACAAAACGTTACTACCCAGAAAGCCAAAGATGACCGCTGCACGGATGGCGTTGCTGCAAGCGCTCCTCGTCGCGTCTCTCCACGGAGTGTGCGAGAGCAGGGGCGGAGGCAGCGATCTCGTGCCCAAGTTCTCCTCATCCTTGCCCACGTACCTCCCCGTGTCCTGCCAACTGCAGGGCGCAGAGTCATCCTTCTTTCTCCGGGAGGccacacaggaagtgatgcgTAACGGGAGCTTGCAGACTCGCAGCGAGCCTCTCTTTCTCCACTTGCCCGAATCCGGCCCCGCTCCCCTCTTGTCGGTCAACTGTAGCTATGGCAATCTCACGGCAGAGACGCCGGTCCCTCCAGAGCTCCTCCAGGGGGCGCTGCCACGTTCGTTCCACACCTCTACACACCTGACGCTGGGCTGGAAGGTGAGAGCGCACCTGGTGAGCAGGAGGATAGGAGTCGATCGGCCTCAGATCCAGGTGTTGTTTTATCTGGCGGGCCGCAGGTGGGAGGATGTGGATCCTCCAGCCGAACTGCTGCCATGCATCCGTGTCGTTGGCATCCGCGATCCGGGGGAAGGTTCGGTATCGAGCGCCTGCCGTCTGGAGGGAAACCTGGGGATCTGTGTTGCTCAGCTTGGCGTTCCTACGAGCTGGTTCAACGCTCCCCCGCCACGTAGGCGCATGCAAGAGCCCATTCCTGTCACGGTGGAGTTGCACTACTCCATCCTCCCTCCAGAGGCCCTGGGTAAAGACTGCGCGGTGGGAAGGGTGCAAGGAAAGGCTGTAGGGCAGGAAGGGGATATGCAGAGGATTGGGACGGTGACTCTCGCCGCTGGGGACAACAAAGAGCCCAGGATCCGACTTAGACTGGACGGAGACGTCGAGATACTGGCGCCCCCCAGCCCAGTTAAACAGGGACAGACGGTGGGGTTTCAAGTACTAATGAATTCAGCCGCCGCCACTGAGCAGTTCACACTGAGAGTCCAGTATGGGGAAGGCATTAATTTCATGGTGGTGAAGCCCAGTAATCTGGCAGCGTGGGAAATCAAGCAAGAAGTAGTGCCTGGCTCCTCCTCCCTGTCCATGTTCTGCCAAAGGAAGGCCAGCTCCACCACCGAGAAACTTGATGGTTCCTTCTATGAGATCATGTGGGTGGACTTTGAGATTGACAATTTCATCAACCTGCGGTCATCACAGTCCATCCGCTGGCAGATAGAGTATCCTTCCACCGGCGCGTCTGCCGAAGTCATCTCTACCATCTACATCAGCCAGAGAGACCTACAGGGTATCGTACCCATCGCTGAGGACACAGAGATCCTGAACACAGCGATCCTGACCGGACGACGCGTTGCCATCCCGGTCAAGGTTGTTACCGTGGAGCAGGACGGAACAGTGAGAGAGGTCGATGACCCCGTGACCTGCATCTCCACAGACGAGGACGTCCTCAAGGTATCTCTTGGTTGTGATGAGGTGCTGGTAAACGGGAAAGAGAAGAATGGGCATATCTCTCTTCGAGTGAACTTTACCTACCTCTATTTGACCAGCCAATTAGAGCTCACCGTCTGGGTGCCACGGTTACCGCTTCAAATTGACGTCTCTGATGCCGAACTCAACCAAGTCAAAGGATGGAGGGTACCCATCATCACCAAcaagagGCCAACGCGGGACAGcgaggatgatgaggaggatgagAGGAAGGGCAGAGGCTGTGCCTTACAGTATCAGTACGCTCTGGTGCGTGTTCTCACACACTTCGTAGCCGAGCCAGTTGGTCCTGGTGGGGAACTTGTGCACATGCTgggttctgattggtcagccgACATCACAGAGATGGTCCTGGACTTCCTGAAGGTAGAAGATACAGGCATTGCCCGACTAATTGACGGAAGGGTGCTGGTGGGGAGAGACAGGGGCATGACCTATATACAgGTAATATCCCCCTTTTCGGACTCCATTCTGGCTGAGAAGACCATCACTGTGGTAGATGATAAAGTGACCATCAGTGATTTGGGAGTTCAGCTGGTGGGCTCTTTGAGTCTCTCACTACAGGCCAGCTCCACCAACAACAGAGCCTTCTACATCACAACCACCGCTCAGGACCTTTTGCACACACCCAAACAGGAAGCCATTATCAGTGCATGGATTCAGTACAGCGATGGCTCTGTGACCCCTCTTGACATCTATGACCCTAAAGATTTCACTGTAAGCATCACCTCACTGGATGAGAACGTGGTCTCCACCTATCAGGATCAGTCCCAGCATTGGCCTGTGGTGGTGGCAGAAGGTGAAGGGCAAGGAGCACTACTGCGCGTGGAGATGATGATCTCAGAAACCTGCCAGAAATCCAAGCGAAAGAGCATTTTGGCCATGGGGATAGGAAGCGTGCAGGTGAAGTTCGGACAGAACGACCTGGAGCAGAGGAGTGGAACTCAGGAGGAGAACAGTCTGGACAACAGCACAAACGAACAGAAGCATAAGCTTCTAGAAGCAGATAAAACAAGTGGAGGAGATAGCTGGAAATACACAAACACCGCGGTGGAACGAGAAGAGTCGGTCCTAAAGAAGGTCAGCACGACCGCAAAGACTCCACTAACTAGTCGATCCGGGGGCAGCAAGCAGGGTGGGGGGCAAAACAACAACCCTGTGGACTATACCAGTTTCCCAGCGCAGGTGGATCTACCCGGCGGGGCGGACAGCGACTTGACTCAGGCTCCGAGAGGTCTGTCAGACCTGGAAATTGGCATGTATGCCCTGCTTGGAGTCTTCTGCCTTGCTATCCTCGTCTTCCTCATCAACTGTGTCAGCTTTGCCTTCCGCTACCGCCACAAACAGCTTCCTGTTCTGGAGCAGGGCAACATGAACCATGCCCATGACTGGGTGTGGCTTGGTAATGAAGCGGACCTTATGGATCATCATGGCGACCACGGGCCACTGGCGCACAACGATGAGTGCACTACCGCGATAGATCGCAACGAAGGGTGCGAGGAGAGCAAGTACCTCCTCAACGGGAGCGGCATTCAGAAAAGCTTGTCAACACACGGACGTGGCATCCCTCATGTGCACTCAGATCCACGGTCCTGTTCGGGAAATGACCCCAGTGGAAAAGTCGAACCCCTTAACAACTCTCCCAGCGCTGCCAAGCGCAAAAGGGTCAAGTTCACTTCCTTTGCCACCGTGCTACCAGACGAAGGCGGGCCCTACACCAACTCCATCCTTATCGGAAATGAAGACGACATCAAGTGGGTGTGTCAGGACATGGACCTGGGACAGTCAGCCGAGCTCAGGAGCTACATGGAGAGACTGCAAGACAATCTGTAAGAGCCGAGAAGAGAACGAACGAAAGGGAAAGCGAGAGGGAGTGGAAACACAAAAACTCACCAGAAATGCCTTTGCACTGTGGGGGGAATGcggggagagagggagggaggaatTATTAAAGAATCGAAAGTGGATGCAAGCAGGGAGCAGGAAGGAATAAATTCCTTTGGGAGACTCGAGTTAAGTAGGAAATTCACAAAAAGGGGAAACGGGTGAAGAGAGACTGGCACGTTCGTACTGGCTCCGCCGAGCGGTCCAGGTGGCGCAGAGTGAGCAGCTGCCAATTGGCTAGCACAGGGACAGAACGCCAGTTACCGACACCCCGAATAAACAAGCCCAAACAAGACCAGcgagagaaggaaagaaaggaaacaaaCTTGACAGCTGTACAGAAAATCACAGTCCATGGAAGTCGATAAACGGGAGTTGTTATCGCTAATGTAACTtggtgttttgatttgtttcaatTCAGATCATTGGGACATATACAACAGATCTTATTTTTTGAGAAAATTcctgtttttgggtttttttagatTAGTATGTAACTAGACCAAAACAGGCCCTCGAAGCACCAGGCCTGCCCCAGatccaggtgtgtgtttgtttttttactgctcATTTCGTACTGTCTGTCTTTCCTGTGTTAATTCCCATAGAGCTTGTGGGATTCCCCCTGGCTGGAGTACCAGCTgtatctgcacacacacacacacacacacacactgtttaagGAGTCAAAAGGCACCAAACCAGTCCTCCCTCTCCATCTCTCGTCTGGGAGAAAAACACAAGACATCAATGATGAAAAGCAACATGAGAATAAAAAGACTCCTCATGCACTGTTCATTTGATCAAgtgaatgtggaaaaaaaaaggacagaggACTTCTTTTGAGTCCCATCGGGCGGGTTGTTCATTTGCACAATAAGAATAATACAGAAAGTGCATAGAGCGGCCCTCAGCTGATCTGAGACCGGCCGGTCTGACTGTCTTTACAGCAACTGATCCAGACATACAACCTGATGATGAACATGGGACAGACTGTGTAGAAATACAAGCCCACAAAATTGAGTTGTGTTTGTTATAAAACCATATGATTGCTGTGATAGAAAAATATACAAGAGTAGATATGGTCTATTACTCTCCAGTACGGTAAATGTATGaatgtttctctttttattgAGGCGAAATGTACATCGTTTACCCCCTTTTTACATGGCCGGAGCACCTGCCCATGGTTTTTACATGTCCTATAGGTTTTAAAGCAACTTTCTATTTCTGCCTCACTAACCCCAGCTTTCCCCGGCTCCTTGAATCCTTGTTGTTTATATTACTGAAGAGTTGTAGGGAAGGCCCGATGTGGAAGCCTTCTCTTTGAAAGCTCAGGTGAAAATACGCTCACAGATGAACAGTGGTAGAAATCAAATGTAGATTGTaagaatgcaatatttatttgtaagtgTAATATGAGATaggatgtaaataaaatgattcagaatttcTTGTGGACACTGCAAGAAGGCTGTTGCCTACATTTTCACAATCGACACACAGTAGAGTCATGAGGCCGTTTGAGTGTATCGTATTTTATGTTCAAATCTAATTTCTCCtcgagaaaaaaataaataaaaagataggCTTTAATATGTTAAGACATGTCATGGGTTCTGCCAGAATATCAGATTCCCCATTTACACAGTCTTTTACTTTGATATATTATTTCAGTGTGCTTCAAAggtgtttaattatatatatatatatatatatatatatatatatatatatataataatatatatatatatatatatatatatatatatattagttaaagCTGTGTTAGAAGTAGGGTAGAGCAGATTTAATTGTAATTGGAAAGTacaattgtaattgtaattaagtACAATTATTCCATGTAGAATCTTAGTTgctaaatttttaatttattaaaaatcaattattctaattttaatatttaatcaatttaaaaaatatatattttttgttcgtttttatattatgttttgtcAGCTATTTTGATACCAGTTATGAAATGCGAGAacaaactttaatattttacctATTCACTTTAtgtctgttaaaaaaatatatatttaaaaacatctattattattattgtgaatttattattacatttaaacctGCTCTGTTCTATTGAAATTGTTATGATTTGTCATAAACAATGTACGAATGAATCAGTTTGACTGAAATGTTTAAAGTTATGTAGAAActgaaatgcttaaatattttgaCAGTCGTTTTAAAGGACAACAGCAGTttgcaacaaaaacacaagtaAAGGGGGGGGGTTTGaacttttcttttataaaacatacataccTCGTTTACTCTGAGGTGGAGTGACAGGATGTCTTCTTTTCCAGGTGTCCTTATGGGATTGGTTTGACTTTTACTGTATGGAGTTTCATTTCGTTCTGGCCTTGACTCTAGGTACAGCAGAACGACTGTTTTCTTATTAAGTTTCTTGGTTTAAGCACTATCCAGTTTATTGTCCGTTGCGACTGTAAATTATGGAGAAACCATATaatagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagaaagagagagatgttgAGCTCACGTGTTTGCCAAGGCCATCGCTGACACCTCTTCAACCAGAATAATATACTGGATTGTAACAATAAAGCTCTTCGTTCACCATCCACATGAGGCCTTAGATGCAGTGTCACAATGTCTGATGACTCAAGATGGAGGATATGAACTCATCTTTATTCCACAGTCATTCGCTTATTGATATTCTGATGTGTTTTTCAGATAATCTATTCCTAAATGCTCATGCTGTGCATTTTCTCATAAACCATGTCGTATCCCGCTATATGATTCCATGTtttcatataaacatatacGTCTGATAAAACTGCTTCGTGTCCATGTACACAAAtctatattttcatataaatacgTTTTAGAACCTGAAGACGCCATGATTTTGTACAAATATACAGATCGAAAAGCAGAACGAATAACGTAAAACACCTGCAATGCTCTACGTTCTCATTTTACAGAAGTACCGACATCCGTTAACGTCCCTTTTGCTGGTATTTGTTCAGTATGACCCTCATTGTGTACATGCTTTCTCATTAAAGATGTTGCCTACTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251035.1 lncRNA downstream 463 5142578 ~ 5169249 (-) False LOC122345808
XR_006251034.1 lncRNA downstream 463 5142578 ~ 5169249 (-) True LOC122345808
XR_006251036.1 lncRNA downstream 463 5146350 ~ 5169249 (-) False LOC122345808
TU49076 lncRNA downstream 93678 5075761 ~ 5076034 (-) True G33334
TU49075 lncRNA downstream 115809 5034111 ~ 5053903 (-) True G33333
XR_006250957.1 lncRNA upstream 240660 5574164 ~ 5597629 (-) True LOC122344984
TU49160 lncRNA upstream 248639 5582143 ~ 5584600 (-) False LOC122344984
TU49165 lncRNA upstream 254541 5588045 ~ 5589905 (-) False LOC122344983
TU49166 lncRNA upstream 254541 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA upstream 255423 5588927 ~ 5595020 (-) False LOC122344983
XM_043240689.1 mRNA downstream 155771 5008086 ~ 5013941 (-) True rnf215
XM_043240688.1 mRNA downstream 168656 4949084 ~ 5001056 (-) True zdhhc8b
XM_043239098.1 mRNA downstream 221759 4927327 ~ 4947953 (-) True si:dkey-112e17.1
XM_043238166.1 mRNA downstream 611868 4487841 ~ 4557844 (-) False galnt9
XM_043240048.1 mRNA upstream 17942 5351446 ~ 5380269 (-) True aacs
XM_043240187.1 mRNA upstream 50051 5383555 ~ 5388325 (-) True LOC122345752
XM_043238772.1 mRNA upstream 55315 5388819 ~ 5393629 (-) False poli
XM_043238771.1 mRNA upstream 55315 5388819 ~ 5393629 (-) True poli
XM_043238769.1 mRNA upstream 65390 5398894 ~ 5410494 (-) True ankle2
TU48850 other downstream 546654 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 976631 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 976631 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 976631 4144927 ~ 4193081 (-) False LOC122346168
TU48804 other downstream 1275237 3885550 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 97760 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 622795 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1490667 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1589926 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1597368 6930872 ~ 6943203 (-) False usp20

Expression Profile