RNA id: XM_043240616.1


Basic Information

Item Value
RNA id XM_043240616.1
length 3603
RNA type mRNA
GC content 0.48
exon number 21
gene id rasa4
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22793505 ~ 22823866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGTGTTAGCTCTCGTTAATCTCGAGGGTTAACAAACGACTCCTTCTCCCTTCACGCGCAGAATTCATTTCTCGGGTCGCGTCGCGTCGCGCCACACCTCGTCTCCACTTGACGCGACGCAACAAAAGTAGCTAAAACACTCCACAAAAGCCGCCCGCGCGCTCGCGGTTTAAAAGCGGCGGCGTCGATTCCGAAGCGAGCGTTGCGGTTTTGTCGCGTCGCGTCTGCTTAATATCGTCTCTCGTCAAGTGCGCGATCCAGTCAGTCACTCCTCCTACAAACAACCCACGGAGAGATCAAACCCGCCCGTGTCTAACGCGTGGATCGCGCAGACGACCGCTGGACGCCCCGGCGGTGCCGCTTCTCAGCGCGGCGTTATATATCGCGAGCTTTATCGACAGAACAGTTCATTTGCCGTTTTGTGCAATGCTCACAATCATGCGCGTTTCTGGAGAAATAAGAAGTGTCGGCGCGTGATTTAGGCTGTGCTCCGGATGACAGCATGGCTAAACGAAGCACACTGTTCATCAGGATCGTGGAAGGAAAGAACCTGCCAATCAAGGACATAACTGGAAGCAGTGATCCATACTGCATCGTGAAAATTGATAATGAGGCAATAATTCGGACAGCAACAATATGGAAGACATTGTCTCCGTTTTGGGGTGAAGAATACACCGTCCATCTTCCTCCTTACTTTCGAACCGTGTCTTTTTATGTCCTGGATGAGGACTCTCTCAGCCGAGATGATGTTATTGGGAAGGTGTCAATCAGTAAGGAGCTTCTCACTGCTAAACCTCAAGgtgtagatggatggatgaatctAACAGAGATTGACCCTGATGAGGAGGTGCAAGGAGAGATTCACCTCCAGATTTCGGTGCTGGGAGATGGGGATATTCCACGAAAACTGTGCTGCCAAGTCCTAGAGGCAAGAGATCTTGCCAAAAAGGATCGCAATGGGGCTTCCGATCCTTTTGTCAGAGTGAGATACAATGGCAAAACGTATGAGAGCTCGGTGGTTAAGAAGTCCTGTTACCCGCGGTGGAACGAGAGCTTTGAGTTTGAGCTGGACGAGACGCTGGCTGACCCTGGGCTTTTGAGCGTGGAGGTGTGGGACTGGGATCTGGTCAGCAGAAACGACTTTCTGGGAAAGGTCCTGTTCAACATCAACAAGCTTCAATCTGCCCAGCAAGAGGAGGGCTGGTTTCGCTTGGGGCCTGACAAATCCAAACACAGTGAATATGAAGGGACTCTGGGCTCTCTTCGTCTGCAGCTACGGCTTCGGGACGAGGTTGTGTTGCCATCCAGCCATTACAAGCCACTCACAGAGCTACTCAGCCAGTCGGTCGGCTCTCAGCTCAACGGCAACTGGCCTGATTTCATCATGCTGATTGATGAGACCACTACAGCAGAGAGCAGACAGGAAGTAGCTAATAATCTAGTCAAGCTGTTTTTGGGTCAAGGGCTTGTCAAGGAGTTCTTGGACGTTCTGTTCAAACTGGAGCTGGAAAAGACTACTGAGCCCAACACACTTTTCCGCAGTAATTCATTAGCCTCCAAGTCTATGGAATCTTTTTTGAAGGTGGCTGGGATGCAATATCTGCACAGGCTTCTGGGCCCGATAATAAATCGAATCtttgaagaaaagaaatatgtaGAACTGGACCCTAGTAAAGTAGAACTGAAAGAAGCAGGGTGTGCAGGTTTGCACCGTCAGCAGACTGAGTCTGATATTATTCAGCAGAGCTCCAGCCTCCTGCAGTCGTACCTGTCTGAGCTTCTCACCTCCATCCTGCAGTCGGCCTCATACTGCCCCCTGCTCATCTGCCAGGTTTTCCATCAACTCTACCTCAGAGTTCAGGAGCGCTTCCCTAACCCAGAGTACCGGAAGGTGAAGTTCATTGCTGTGACCAGCTTCCTGTGCCTGCGCTTCATCTCACCCGCCATCATGTCTCCAAAACTATTTCACCTTCGAGAGAAGCACGCTGATGCCCGTACGAGCCGCACGCTTCTGCTACTTGCCAAAGCCGTGCAGACCATCGGGAATATGGACACTCTTGCATGCTGCTCTAAAGAGCCATGGATGGTGTGCTTGCAGCCAGCCATACAGCAGGGCATCACTCAACTCAAAGACTTCATCACTAAACTGGTCAACTGCCATGAGTCAGAGGATCTTGAGCTTCAGACACGAATGAGTCTGCAGTGTGGCACTATGGAGAAAGAAGGCTTCCTCTTCCTGCACAGGACCAAGGACAAGTGCATGCCCATGACATCACCCTTTAAGAAGTACTATGTCACGCTCAGTAAAGACACTCTGTCATACTCACGAACACAGCACTCCAAAAAGAGCTCGTTTATTTCGCTGCCAAAGATCCGGGCAGTAGAGAAAGTGGAGGAGAAGTGCTTCGGCAGTGCCAACGTCATGCAGATCATCTCAAGTGAAGACTCCGGCCTGCAGGAGACCCTGTACCTCGACTGCAAAAGCGTAAATGAGTTGAATCACTGGCTGTCAGCTCTGAGGAAAGCCTGCAGTCACAACATAAACACTATGAGCTGCTATCATCCTGGCATCTATAAAGCAGACAGATGGAGCTGCTGCCAtcagaaggagaaatcagACCCAGGCTGTGATAAAACCAGACACGGAGTGACTCTGCAGGAGTGGTATGACCCACTGGACCCGGATCTGGAGGCTCAGCTCATCTACCAACATCTGCGTGGTGTCCAGCATGCCATGCGAGATAAGTATTATAAATTGATAGAGCAGCAAGGAGTTAAGGAGGCAGATTCAGGAAGAGACAAGAAGAAGGCAGACGTGCTATCAAAGCTCTTCAGTATTCTCCAGGACCTACGTGACGCCCATGCCGcagtggaggaggaggaaagatcaaagaataaaaatgttttcttggaACTGCAAACGTAAACAAGGACTTTTTAACCGGTTGCGTTTCATACACGGTAATCCAGAGTGTTACTCATACGCAGGCTTCAAACCCGCTATTATTTGACGCATAGACGAGAGATGAAACACTGTACAGGAAGTTAGATTTGTTCTTGTGTACTTGAACTTTTAAACCGATTCTCAGTGGACGGATAGATGAGCTGCAATCACAATCCCTTTATTAAAGGAGAGTCGTGGTGTATTTGTGGAATATTTGGTATCGAGGACAGCGTCACCTTACTGCAGTGATTCACGTGGGTCGTCCTGTTGGCATTTTTGCAGCTTTTGCATACATTCAGTTTTCACTTTAACTTTTTCGACATGTTAACCAATCAGCATTCTTCCTTCTTCAATGTGCTTTTGACTTTACGAAGCACCGTGGATATGCACGTCAGCTCTTCCACCGTGTGGTTTCtctttaaatcagttttaacaGAATGTTTATATCGATTTTATGCTATATAGATGCttgtttgcaatttattttgtaatcctCTATGTTGATGGCAAGAGGAGAATTGGtttattcttgttttaaatGCCATGCAAAGCTGCCATCCCTGCTGTCTCAATGCCTTGTCTTTATGTGTCACgctttgtttttatgtctttttatgATATGAGCTGTAAACATGTATGCATTGTGCATTTCACGAAA

Function

GO:

id name namespace
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17630 RASA4, CAPRI; Ras GTPase-activating protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57176 lncRNA downstream 452 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 452 22791710 ~ 22793053 (-) False G38634
XR_006250930.1 lncRNA downstream 752242 22038360 ~ 22041263 (-) True LOC122344815
TU57216 lncRNA upstream 50108 22873971 ~ 22876437 (-) True G38658
TU57350 lncRNA upstream 212594 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 303356 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 521726 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 533711 23357574 ~ 23358147 (-) True G38769
XM_043239958.1 mRNA downstream 2698 22761711 ~ 22790807 (-) False clip2
XM_043239957.1 mRNA downstream 2698 22761711 ~ 22790807 (-) True clip2
XM_043239959.1 mRNA downstream 2699 22761711 ~ 22790806 (-) False clip2
XM_043239150.1 mRNA downstream 33728 22738083 ~ 22759777 (-) False gtf2ird1
XM_043238401.1 mRNA upstream 2446 22826309 ~ 22831734 (-) True upk3b
XM_043238402.1 mRNA upstream 8780 22832643 ~ 22835323 (-) True prkrip1
XM_043239969.1 mRNA upstream 20883 22844746 ~ 22874871 (-) False vps37d
XM_043239968.1 mRNA upstream 20883 22844746 ~ 22872911 (-) True vps37d
XM_043239962.1 mRNA upstream 59492 22883355 ~ 22900893 (-) False rabep1
XR_006251119.1 other downstream 753471 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 833621 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 909483 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 909483 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 967400 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 778381 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 928017 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1063440 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1373842 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1764165 24588028 ~ 24594116 (-) False anapc2

Expression Profile