RNA id: XM_043240627.1


Basic Information

Item Value
RNA id XM_043240627.1
length 4603
RNA type mRNA
GC content 0.41
exon number 26
gene id LOC122346005
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24814609 ~ 24903289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTTATTCTATTCGACGACTCTGGCAGTATCAGCCCAAAAATTTTGAAACGATGATCCAATTTATCAAGAACttaattgtgatgtttttggacAAACGAGCACAGGTGGCAGTGGCTAAATTCTCCACAAGAGTTTCGGCAGTCTTTCACTTTGAGAACTTTGCCGTGAATAAAGACCCCGAACAACTAATGAAAGATGTGACCCAGGCACAGGGcgatacacacacaccttcgGCAATACGTTTTGTTATAGAACAGATGTTTTCTGAGAAGGTGGGCATGCGAAACAACTCTCAGAAGTTATTGCTGGTGATTACTGATGGAAAATCAAATGACCCCAAAGAAGACTTTAAGAATGTCATCCTGAAAGCCAATGAAAGGGACATCACACGATTTGCCATTGggGTTGGTAAGGAGTATTCTCATCCTGAGCTGGAGCTGATTGCTTCATCTCCTCAATTTGTTTTTGAGACAGAGAGTTTCAGTGCTCTCACCTTGATACTAAACCAGCTAAGAGAAAAAATATTCTCTATTGAAGgAACTGACACAGGGAACTTTAGCTCTTTTCAGATGGAATTATCACAAGGGGGTTTCAGTGTGGCCATTTCAGAGGGTTCAAAGATTTTTGGAGCGGTTGGGGCATACTCCTGGTCAGGAGGAATGGTGCAGGGTCTTACTGATCAAATGCTCAATTCATCATTCATTAATGCCACAAATATGGAGGAGGATATTGCAGATTCCTACTTGGGTTACTCAATTGCTGTGGCACCAGTAAATGGTCATGTTGTGTATTTTGCGGGAGCACCAAGGCATAGACACACAGGGCTGGTCCTGGGCTTTAGAGAGAACAAATGGAACCACAGTTGGACCATCATTCATAGGATATATGGATCACAGCTCGGCTCATATTTTGGGGCAGAATTATGTGTGATTGGAGTTTCTGAGTTTTTAGCAGTCGGGGCTCCATTATATCATGCTCATGGAGTGGGAGGAGAGGTCCGGATATACTCACTAAACACTACAATCCAAGAACTCAAATGCTCAACGATTTTGCGTGGGGTGATGGGCAATGAGTTTGGCCGGTTTGGTACTTCTTTGGCAAACATACAGGACCTGAATGGAGATGGCTTTAAAGAGTTGGCAGTGGGGGCACCTCAAGAAGAGAAGGGCAAGGGTgcaatttacatatttttgggGCAATCAGGTGGTATCAGACCAGAATACAGTCAGAGAATAAGTGGAGCAGCTGTAGGAAGTGGGCTGCAGTATTTCGGAGTTGCTCTCCACTCTGCGGGAGATCTGACCTCAGACGCTCTTACTGATGTAGTGGTGGGCTCTAGAGGTGCAGTTACAGTAATAAGgTCTCAGCCTGTAATATGTTTGGCTATAAATGTCACCGTTGACCCACCAATCATCAGTCAGAAATTCTTTCATTGCTCTGTCCCGCTTGATCGCAACACACCTGTTGCCACAGTTACAATCTGTGTCACTGTAAAAGAAATTGCCAAGGGTGATATAAAAGTGGCTTTGGAGCTGGAGCTAGACCCTTTGGCCAGAACTCCTCGGCTGTTATTTGGTTCCAAATCAGCTTCATTTCTCCTCACCCTCAATGGTAACCTGAGCAGCATTTCTCCTGTCTGCACTACTCTGTATATCAGCGTCCAGGAGTGTATTTCAGACTACCATGAAGTCCCTCTCACTGTGAAAATGAAAGTAACAACAGAAGTTATTCCAGGAACAGAAGGTCTGAGGCCAGTGCTGAGCCCTGACTGCTGCCCTGCATTTACAGAGATGGTGGTTCTGGAAAAAGTGTGTGGGGAAGATCATGTGTGTACATCAGATTTAAATGTGTCTCTGTCTTTTAAGAGGGATACTGTAGTAAGTGTTGCTGGTTACCCAGTGAATCTCTCAGTGGAGGTATTCAATAATGGAGAAGATTCCACAGATACAGAGCTTTTCCTTCATCATCCCACCATCCTCTCCTTTACCCGCATCAAAACGAATGATGTGCAGGTTTGGTGTGAGTCCAGTCACATAGAGCTCTCAAACATTACATGCACAGCATGCAAGCTTGGAACAACACTTTTCCGCCAGAAAGCAAAGACCACGCTGATGGTGTCATTCATGCTGTCTGCACCCTTTTCTGCGAATGAGCATCTGGTTGTCAATGCATCAGTCACAAGTAAGAATGAGAACAATGACACATCCCTAGATAATCATGCAACTACATCTGCGATGGTTAAACGTCCTGTTAATGTTGTGGTTAATAATGGAGGGTCAACTCGATTTGTTGAATATCCTAACTGTGCACAACTTGAGCATGTTTATACGgtGGAGAACTTTGGAAAATTCTCTGTGCCTGTAAATGTTACCTTTGTGATTCCAGTGAAGATGGCTTTAGGTTTCTCATGGAATGTATCTCTTCCTGAAATTAATGGAACCAGAACAGTTTGTGAAAAACAAGTTTCCTCTACAAATGGCAAAAGCCCCATTCTGACACATCATTGCAATGCTTCTACATGTCATCTTATTGTTTGCTCCATCCAGCTCTTTCCTGACCAACAAATCAGATTCAGGTTTAGTGGGAATATAAGTTCAGGCAACCAGGCATCTGGTTTGCAGGTTCGGATCACGAGCTGGGTGTTTCTCTCATTTGACACTGTTATGTACATTCAGTATCCTTCTGATGACTCTAATCAGCTCtctATTGTGACAGAGCTGGAGTACACGTCTCAGGCTCTCACAGTGCTTACCGCCTCACTCTCTGTCATTTTTGGACTCATTGCTATGACAATCATCTTTGTGCTGCTTTATAAAAGGGGATTTTTCAAAACTGCTTCAACTGATGACCAAGACAACTTAGTACTGCGTTCTGCTGGTGAAACTGGCTTGACTGCAGGAACCCCTGAGCTTTAACTCAACAAACTCCAAACTTAGCTCGGCTTTTCAGATTGATTTCACAGAATGTGCTTAACTTCACACCCCTGGActgtttagtttgttttcatttaccaTGTGCCATGTATGACTTAGTTTCTGTCTCTCATCTCATTATGGTCAGTCATTCATTATACTCATTAATTACCCTTTATAAAAGTTGTATCTATTCTATTCTTTGTTTGGTCTTATCTACACGGTGTGCATGATTTAGGCAAGTTGTACTTTTGAGGATTAACTTTGCTATTGTATAACTACAATGCTCTTGGtcaatccaaaataaaacaaaccctGAACATTTAAGTAGTAAAAGTGAGGTTTTGGCTTTTTTTAGAGAATATATACACCATTATTAGGCAACTATAATTGGGCAGAATTATTATGCAACTAAATGAAGAACAAAGTTTTTCCCATatcacttgtttatttttttacctgttaAAGTGAGAATAAAACTCAAAATTTACTAAAACTAATGAAACCTCAAGAAGAAAACCTCAGTGGCTAATATAGCCACCCTTCTTTTCGATAACAGTCACAAGCCTTTCATTCACGGAGTAAGTCAGTTTTTTGATCTGGTCAATATCAACTTTCAACTGTTCAGAGAGGTGTACTGTTTACCTTCACTGTAAATTTTCTGCTTAAGAAGGGCCCAAAAGTTCTCAATAGGGTTTAAGTCAGGTGAAGAATGGGGTTATGTCATTAGTTTTTTATCTTTAAGGCCTTTACTGGCCAGTCACGCAGTGGAGTACTTTGATGCATGTGATGTTGTTCTTGAAAGATGCAGTATTTTTCCTGTAGCACTGCTTGAAGAAAGTGTCTTCTAAAAATTGGCAGTAGGTCTGAGAGTTCCTTTTGAGTCCATTTTCAACCCGAAAGGTCCAACTatctaatttttaataatacctGCCCATACCAGTACCCCAGTCGAAGAGTCGAAGTGGAGCTCTGTGTCTATTACTGATCCAACCACAAGCCCATCAATCTGGTCCGTCAAGCTTCACTCTCATCTCATCAGTCTACAAAACCTTTGACAAATCTGTCTTCAGATATTTCTTAGCCCATTCTTGACGTTTCAACATATGCGTCTTGTTTAGAGGTGGTTGGGTTTCAGCCTTTCTTATCTTGGCCATGTCTCTGAAAACTAAACACTGTGTACTTCTTGACACTCCTGGTAGCTTCATGTTTGATTCTTCTCCAATATTTGGCAGTTAATTTGCGTCTTTTCTtcttgaaatgtttcttgcgAACCTGTTGACTATTTGCTACAAAACGTTTGAGGGTTCTGTGATCATGCCACAATATCTTAAACATTCCAAGAATGCTTGTCCTGTTAGTCagttaaatctctttttttggcCCATTTTTCATGTAGAGAAGAATctgcctaataattatgcacaccttGATATTGAGTGTTGATCTCCTTAGGCCATACCCTTCCTCcttacacaaatacacatcacCTGATATGTATTAAATCCACTAAGCATTCAAGTTTATACAGCTTGGAGTTGGAAATTCTGGGTAAAAAGATGATATGGTCAAAATAATCACTTGCCTAATAATTGTGCACACAGTGTATGCAGTATCTATGTAAGTGTGTGCTACTCTTCTGTGCAAGATTACCTCTGTGTGGATTATTAAAAGACTGTTTATTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58223 lncRNA downstream 55982 24754204 ~ 24758627 (-) True LOC122345923
TU58257 lncRNA downstream 61287 24753082 ~ 24753322 (-) True G39347
TU58240 lncRNA downstream 66033 24746672 ~ 24748576 (-) True naa38
TU58251 lncRNA downstream 82534 24731639 ~ 24732075 (-) True G39341
TU58247 lncRNA downstream 84218 24730212 ~ 24730391 (-) True G39337
TU58278 lncRNA upstream 9357 24912646 ~ 24912939 (-) True G39365
TU58279 lncRNA upstream 21418 24924707 ~ 24924947 (-) True G39366
TU58288 lncRNA upstream 113272 25016561 ~ 25016841 (-) True G39375
TU58290 lncRNA upstream 115960 25019249 ~ 25019491 (-) True G39377
TU58301 lncRNA upstream 147892 25051181 ~ 25051518 (-) True G39384
XM_043240635.1 mRNA downstream 31961 24759478 ~ 24782648 (-) False taf6
XM_043240636.1 mRNA downstream 31961 24759478 ~ 24782648 (-) True taf6
XM_043240457.1 mRNA downstream 55941 24754202 ~ 24758668 (-) False LOC122345923
XM_043240470.1 mRNA downstream 63327 24749282 ~ 24751282 (-) True sat2b
XM_043240471.1 mRNA downstream 65999 24747031 ~ 24748610 (-) False naa38
XM_043239176.1 mRNA upstream 327946 25231235 ~ 25263128 (-) False zfpl1
XM_043239175.1 mRNA upstream 327946 25231235 ~ 25263124 (-) True zfpl1
XM_043240265.1 mRNA upstream 400186 25303475 ~ 25446662 (-) False LOC122345796
XM_043240264.1 mRNA upstream 400186 25303475 ~ 25446661 (-) True LOC122345796
XM_043240267.1 mRNA upstream 400186 25303475 ~ 25446660 (-) False LOC122345796
XR_006250980.1 other downstream 220493 24588028 ~ 24594116 (-) False anapc2
TU57904 other downstream 614113 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 926929 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 1058021 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 1209876 23602244 ~ 23604733 (-) False LOC122345364
unassigned_transcript_960 other upstream 14531 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 14716 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 20859 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 23691 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 29617 24932906 ~ 24932978 (-) True trnak-cuu_7

Expression Profile