RNA id: XM_043240637.1


Basic Information

Item Value
RNA id XM_043240637.1
length 2813
RNA type mRNA
GC content 0.43
exon number 10
gene id zgc:162952
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9107949 ~ 9123877 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAACTGTTGTGACGTCATGGCAACTGGCTCCCACTACACACGgcacattaaatatgtatttcccGTCTAGGCTATACCGCTTGCTTTTAAACCTGCAGAGAGGAGCTGACGGTCTGGAGAGGGCGGTTTGGTCACGCGCGAGGATTGTGGGTTGGAGTGATTGACAGTAAATGGGGTCCTTCCAAGAAGCGCGGTAGAAGCGATGCCACCGGGTTGTCTCCGTCTAGAACTTATTTGGGGATTTGCAGTCGATTTTATTTGATCGGTGAGCAATCAATCAGCAGCAGCGGAGGTGAAGACGCCGGGGTGCTTTCTGCTCTTCTGTCAGGCTCTTCCCAGCCTGTCTGTGTTGTGAGCTCAGGCGGACCGCCCCTCCACCCACTTCAAGATGCACATGAATAGCTTATTAAACCAGTGCACGGAGATCTCCAGGATGTGCGAGGTGGATGTTTCGTCTGAGCCCAGCAGCCCGACGCTGTACACAGAGTCTTCTGATACGTACTGCCATGTGGACCGCTGGCAGAAACTACGCACTGCCGTCCGCAAGCTAGAATTCTGGGAGAACTTCACACACGAGCTGATCGGCAGTGGCTTCTTCTCAAAGGTTTACAAGGTAATCCACAATACCACACGGAAGGTGATGGTAGTAAAGATCTATAAGAATGACGTTGATCAAGACAGCATTGTACGAGAAATCAGCCTTCTGCAAAAACTCTCACACCCCAACATAGTGAGGTATCTGGGTATTTGTGTCAAAGAGGACAAGTTGTACCCAATTCTGGAGTATGTTAGTGGAGGATGTTTAGAGGAACTGTTGGCCAGGAAAGATGTGCCTCTATGCTGGAGAGAGAAAGTAGACCTGGCTTCTGATATCACCAGAGGGATGATTTACCTCCACTACAAGAACATCTACCACAGAGATCTGAACTCTAAGAATTGTCTAATAAGGGTGACGGCGAGAGGCAGAGAAGCTCTGGTTACTGATTTTGGTTTGGCTCGAGAGGTGGTTGAACTTCCTGCAAAAGACAGAAAGCTTTCACTTGTGGGCTCTGCTTTCTGGATGGCCCCCGAGATGCTGCGCGGGGAGCCCTACGACCGCAAgGTGGATGTGTTCTCTTTTGGAATTGTTTTGTGTGAAATTCTGGCTAGGATCCCAGCAGACCCAGAAATCCTTCCAAGAACGCAGGATTACGGCCTGGATGTATCAGCATTTGGGAAAATGGTCATTGAGTGCCCTCAACGTCTTTTAGAGCTGGCAGCCAGCTGCTGTCTGATAGAGGCTTTCCGAAGACCTTCTTTCACAGAGCTTCAGGACGAGTTGGGTGAAATCGCTGAGACTTTGGAGGCTCCTCACAATGATCTCACCACAGGCTGATCTGCGGCACGTCCTCTGGTCTCCCATCAGCCCTGCGAACGGACACAAGCAGCTGGAGTTCTGTACATAGACTAAAGCACAGTGACGAATGCAGCAGAACTGCAGATTTCTCTCTGGGCTGTTTGCATTGAAAGAGCAAATCAAGGAAAAGGTCGCTATTTATTATGAACGTTCTACAAGTAACTATATGGCCTACTGTTCAACTCCGCACAgctgtacataatatatactgtgcaatatataataatactataccAAGAGAAATATTGCATCGGGTTCCGACTAAAGTGTTTAGCTGTTGTCATTCTCTCAAAGCTACAGATTTTCAAACCTATTGTTATTCTTGTTTTgtatatgaatcattttatattgaaaaacTACCCTAAAATAGATTTTGAGGCTTTAGATAACCCATCGATAAAAGCACTAACGAGTTttgaataatcaaataatattttcataggCTTCAGTGTATCGATACTTGATTAGATTTaagaaagtaatttattttggtACCAACTGCCCAAATAGGAAAACGGCGCATTTGTATTGCTGactttttttgagaaaaatatttgaaaaacgagtgcacttttcattatttggAAAGCAATTTATACAGGAGCAAGCACTCAACTCATCGCTTGTCGTTTTTCCTCCACTGAGCTGAGCTGCTGATCTCTGGACTTTCTCCACACGACTCAGCAGGATGAGGCCCATTTCCTGCCTGCAGGGCCTCTGCGCTACTGCTGCAGCGTTTTCATTGTGCATTGTGCCGAGTGTTTGTGAaagcagttttttctttttagcattCGAagcttaaatgttttatgttttaacacTTTCTGTCCATTTTAGTCGACTTGTTTTGCCACGGGTTGTGATTTTCAGtactcacacatacagtatttatcAGAAGCGTGAGATGTGCATCAGTCTTATTCCAATAAACAGCGACACCAAACTATTTGTTTGGATATTGGCTGTAATGGaatcaaaaatgctaaattattttcaCGACCATGCTACTTGCTGCAGTattctgaaaacctgtgctctcttctcattaaaactgaaatcaatATTCTTTTCTAATTTCAAATGCGTAACTTGTCactattgatttgtttttaatatttgtataagtTCTGCTTGGATGTTATTTCGGTTTTTAATCATCGCGCTCTAGTGAATTGCCTGTTGAACATCGTTCGAATTAACTTTAACAAAATCTACATTCTGTGCCTCAAAGAGGAAGCTTGGGGATCTTTTGGTGAGAACCATGTCCTGCTAACCTCATATCTCTGAAACAAGCCTGATGTCTGTATAGTCTGAATCTTCCCgtgttttgtagtgtttttgtaatacggtataaaaaagaaaaaggagtgTATGTGAATGCtgtgtatttttcaaataaagccaTCAAAAATCTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50809 lncRNA upstream 106729 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA upstream 106729 8993896 ~ 9001220 (+) False G34480
TU50811 lncRNA upstream 106729 8995398 ~ 9001220 (+) False G34480
TU50814 lncRNA upstream 106729 8999260 ~ 9001220 (+) True G34480
TU50798 lncRNA upstream 168579 8938265 ~ 8939370 (+) True G34472
TU51097 lncRNA downstream 123033 9246910 ~ 9248013 (+) True G34689
TU51096 lncRNA downstream 124382 9248259 ~ 9251790 (+) True G34688
TU51161 lncRNA downstream 236982 9360859 ~ 9433507 (+) True G34725
TU51186 lncRNA downstream 354728 9478605 ~ 9565907 (+) True G34747
TU51300 lncRNA downstream 641259 9765136 ~ 9765347 (+) True G34840
XM_043238680.1 mRNA upstream 745 9105500 ~ 9107204 (+) True b3galt8
XM_043240196.1 mRNA upstream 3083 9072780 ~ 9104866 (+) False tncb
XM_043240195.1 mRNA upstream 3083 9072781 ~ 9104866 (+) True tncb
XM_043240197.1 mRNA upstream 3083 9072781 ~ 9104866 (+) False tncb
XM_043240198.1 mRNA upstream 3083 9072781 ~ 9104866 (+) False tncb
XM_043240551.1 mRNA downstream 155240 9279117 ~ 9287528 (+) True zgc:110329
XM_043240186.1 mRNA downstream 171319 9295196 ~ 9316541 (+) True slc4a5a
XM_043240185.1 mRNA downstream 171319 9295196 ~ 9316541 (+) False slc4a5a
XM_043240179.1 mRNA downstream 195620 9319497 ~ 9323538 (+) True zgc:113436
XM_043238253.1 mRNA downstream 200343 9324220 ~ 9329844 (+) True abcb9
TU50789 other upstream 236431 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 803798 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1097350 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1309981 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1541373 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 672513 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 940340 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 1605241 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1802946 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1922603 11046480 ~ 11062314 (+) False map7d2a

Expression Profile