RNA id: XM_043240639.1


Basic Information

Item Value
RNA id XM_043240639.1
length 3965
RNA type mRNA
GC content 0.51
exon number 21
gene id ksr2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1424404 ~ 1494687 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATTGATGCTTATCTCGCGAGAACTCTCCCCCTGCTTGTGTCGGCGATGCGATGCTGATGCTGTTGCTGTGAATTTGATTGACGCGAACATGTCGGTGTGATGGGGGAGCGCCGGGATGCAGCCGATGATGGTCCAGAAGGGGAATACGTGCGGTCAAACCAGACGCTATCGTTAAGAAACGACACCCGACGTCCTCCTTTATCACCTTTGACGAAGATGCCTGAATTTGCGTTGCGTTTCACGCGCGCGCAACGGATCTAGCCGATGCCACCGCAGCGAGGAtctgatttgtgtttttttccccttccttCCTTCAATGTCTGTGTGTTATGGTAGAGTCAAGCCGGAGCATCAAACATAAACTGTGCAACCCTGATGACAACGCCGTCAGGATATCAGGATATCAACAATGGAATCGCCTTACACGTAGAGTCTAGTTTTTTCACGATCACACACCGTTATTAGCGCTTTCACGAACGCGCTATCCGAGTGTTGTCTAATCTgattgaacgaaaaaaaaaaaaaaagtagcccGCACTTAAGAGACGGACCACTGCTCCCAAATTATGGACGAGGAGAATATGACCAAAAGCGACGAGCATCATCTGAGTTTGCAAAAAGCCTTGCAGCAGTGCGAACTGGTGCAAAACATGATAGACATTAGTATCTCCAGCCTGGAAGGTCTGAGGACCAAATGTGCCACATCCAACGACTTGACACAAAAAGAAATCCGAACGCTGGAGggtAAACTGGTGAAGTATTTTAGTCGGCAGCTCTCTTACAAGCGTAAAGTGTCCTTACAGGAGCAGAATGTGGATTTGGACGGATTCCCGCGGCTGGGACACTGGTTCCGCATTGTTAACATGAGGAAGGAGGTTATTGAGGAGATCTCTCCAGGCGAGCTGACTCTGGAGGCTCTGTTGGAGATGTCGGACGAGCAGGTGTGCGAGGCGCTGCTGAAGTTTGGAGCGAGCGATGAAGAATGTGCTCGGCTCAATGCCTCCCTCACATGTCTACGATCAGCCCACAAATCAGaacaaCTTGAGGATGACAAATTACACAGTAATGGAGGATCCAAGCAGGACTGGTCCATTCAGTGGCCCACGTCTGAGTCAGGTAAAGAGAACACCCCAGTGGGGCCGTCGGACCCCAGTCAGTGGGTCCGTCTCCAGCTCTCCCAGAGCCCCAAATTGCACTCGCGCTACAGCCAGCACTTGTGCCAGAGTCCCCAGGCCCTGGCTCCCCCCTTCTACTCCCCTCACCCGCATTCAGACCGGCTGACCGTGGACCCTCACTCCGGCCTCTTCCCCTCGCCTCTGGATATGGGACATCACTCTCTCCCTCCTTCCCCCAGACAGAGGCATTTTGCCCACACGCCTCCGCGGACTCCCTTAGTAGTGAACACCATGACCCCTCCAGGGACGCCGCAGATCAGGCGCAGGAATAAGCTGAAGGCCCCTGGAACCCCGCCGCCCGCCAGCCGGAAGCTCATCCACCTTCTGCCCGGGTTCACGGCTCTGCACCGCAGCAAATCCCACGAGTTCCAGCTGGGGAACAGAATAGATGACGCACAGACACCCAAAGCAAAAAAGAAGAACAAGCCGTTGAACCTGAAGATCCACAGCAGTGTGGCTGGAAGCTGTGAAAACCTGCCGACCCAGCGCTCTCCTCTCCACTCCGATCACTCGCTCCGCTCCTTCTTTTTCCCCAATTTTGTCCCTTCGACACCCCCGGTGCACTCGGACACCCCCTCATCAAATACTctgtctgttcctcgctggtctCCTCAAATACCTCGCAGAGACCTCGGCAACTCCATAAAACACAGGTTTTCCACGAAGTATTGGATGTCGCAGACGTGTATCGTGTGCGGGAAAGGAATGCTGTTCggcttaaaatgcaaaaactgcAAATTGAAGTGCCACAACAAATGCACCAAAGAAGCACCGCCCTGTCATTTACTCATATACCACAGAGGAGGTAGGGACTCGTTCAGAGATCAAGGAACGTCTCAAGCTCGTCAGCTCGTCAGGACCGAGTCGGTACCATGTGACATAAACAACCCCCTCAGGTACTCAGACCTCCACATTAGCCAGACTCTGCCCAAGACCAACAAAATCAACAAGGACCACATCCCTGTGCCGTATCAGCCCGACTCCAGCAGTAACccctcctccaccacctcctccaccCCATCGTCTCCTGCTCCCCCTCTGCCGCCCAGCGCAACGCCCCCATCTCCTCTACACCCTTCCCCCCAGAGCGTCAGACAGCAGAAACAGTCCAACCTTACAGCATCTCATTTCTACAAATACAAGCAGCAGTTCATCTTCCCTGACGTGGCTCCTGAGGTTCCCACCAGGGCCCCTCAAGTCATTCTACACCCTGTTCTGTCTGAACCtggTACCAAAGGGAGTCCCTTGCTACAAATTGAGGTTGAGCCAACATCTGATAATGAGGAAGGCAACGATGAGGCAGAAGGCTCAGCGGACGAGTTCGAGGAgatgaatctctctctcttgtcgGCACGGAACTTCCCACGTAAGGCCAGCCAGACCAGCATCTTCCTGCAGGAGTGGGACATTCCCATGGAGCAGCTGGAGATCGGAGAGCTGATCGGGAAAGGCCGCTTTGGACAGGTCTACCACGGACGCTGGCACGGAGAAGTGGCCATACGGCTAATTGACATTGAAAGAGACAATGAAGAACAgctaaaagcatttaaaagagaggtgatggcgtACAGGAACACACGGCATGAAAACGTGGTCCTGTTCATGGGAGCGTGTATGAGACCGCCTCATCTGGCCATCATCACCAGTTTGTGTAAGGGCAGGACCCTCTACTCAGTGATTCGAGATGCAAAAGTCGTTCTCGACGTGAACAAGACTAGACAAATCGCACAAGAAATGGTGAAGGGCATGGGCTACCTACATGCCAAAGGGATCCTTCACAAAGATATGAAATCCAAGAATGTATTTTATGACAATGGGAAAGTGGTCATCACCGACTTTGGCCTGTTCACGATATCTGGTGTACTACAAGCAGGCAGTAGGAGAAAGGATAAGCTGCGGATCCCAAGCGGCTGGCTGTGTCATCTCGCTCCTGAGCTCATCCGTCAGCTCTCCCCAGAGACCGCAGAAAACCAGCTCCCTTTCTCCAAACAGTCTGACGTCTTTGCCTTTGGCACTATCTGGTACGAGCTCCATGCGCGCGAGTGGCCCTTTAAGAATCAGCCCGCTGAAGTCATTATCTGGCAGGTGGGAAGCGGAATGAAGCCCAACCTCACTCAGATCGGCATGGGCAAAGAGATATCCGACATCCTGCTGTTCTGCTGGGCGTACGAACAGGAAGAGCGGCCCAGCTTCTCCAAGCTCGTGGAGCTACTGGAGAAACTCCCGAAACGCAACCGTCGCCTGTCTCACCCAGTACACTTCTGGAAATCAGCTGAGTATGTGAAATGAGCTAAGCTAAAAATCAAAAACCGcctgtttctaaaataaacaaacttggaacaacaacaacaacaaacaaacaaaaaaaaaacccgcaAAACAATCGTGAAGTAACGTTAAGATGGAGTCGGTCCGCGTGACTGAGAGAGCCGCTACTCGATGGCGCATGTGTTCTGCTGTATTTAGCGACGTTTCCTTAACGCAGTGATCATTTAGCATATTTAGAGCACACGGTATTTTCTGGTGTATCGTTTGGTCATGAAAGGGagatgttttcttcttcttcttttttttttttttgctaaatatgttTTGCATATATCAACTGCTTGTGATTATTTCTCATTACCCTGAATGAGTCCACTTTCAGTGAATGTCGTTTTCTTTCGTCGAACCtctgcaatgcatttttttttttttatataaacaactaAGACTAGTGTTATTCGAGTTTTTGtctgtattgtttatattcCTTTCGAATTCAGCCATCGgatgaatgtattta

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K18529 KSR2; kinase suppressor of Ras 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47774 lncRNA downstream 132641 1289278 ~ 1291763 (-) True G32409
TU47599 lncRNA downstream 372225 1051867 ~ 1052179 (-) True G32292
TU47582 lncRNA downstream 545262 877910 ~ 879142 (-) True G32275
TU47578 lncRNA downstream 601575 820615 ~ 822829 (-) False LOC122344906
XR_006250945.1 lncRNA downstream 601940 820190 ~ 822464 (-) True LOC122344906
TU47832 lncRNA upstream 18358 1513045 ~ 1513312 (-) True G32440
TU47864 lncRNA upstream 42711 1537398 ~ 1539368 (-) True G32463
TU47861 lncRNA upstream 46539 1541226 ~ 1567149 (-) True G32462
TU47888 lncRNA upstream 111738 1606425 ~ 1607747 (-) True G32486
TU47992 lncRNA upstream 172011 1666698 ~ 1666906 (-) True G32572
XM_043240454.1 mRNA downstream 21280 1359837 ~ 1403124 (-) False nos1
XM_043240453.1 mRNA downstream 21282 1355359 ~ 1403122 (-) True nos1
XM_043238444.1 mRNA downstream 69990 1342606 ~ 1354414 (-) True lrrc74b
XM_043238443.1 mRNA downstream 69990 1342610 ~ 1354414 (-) False lrrc74b
XM_043240770.1 mRNA downstream 82360 1337163 ~ 1342044 (-) True nipsnap1
XM_043239847.1 mRNA upstream 6780 1501467 ~ 1506232 (-) True wsb2
XM_043238216.1 mRNA upstream 11998 1506685 ~ 1512189 (-) False vsig10
XM_043238215.1 mRNA upstream 11998 1506685 ~ 1512189 (-) True vsig10
XM_043240696.1 mRNA upstream 17453 1512140 ~ 1519866 (-) True LOC122346041
XM_043240475.1 mRNA upstream 30215 1524902 ~ 1526918 (-) True LOC122345935
XR_006250937.1 other downstream 69990 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 88217 1322296 ~ 1336187 (-) False castor1
XR_006251108.1 other downstream 88220 1312604 ~ 1336184 (-) True castor1
TU47988 other upstream 179803 1674490 ~ 1693974 (-) False ypel1
TU48139 other upstream 471950 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 471950 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 525421 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 1001817 2496504 ~ 2554146 (-) True G32857

Expression Profile