RNA id: XM_043240656.1


Basic Information

Item Value
RNA id XM_043240656.1
length 3515
RNA type mRNA
GC content 0.43
exon number 8
gene id npr3
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15350016 ~ 15367413 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCAGCGTGTGTGGTGACCAGCCGAGCCGCACACTTCACACATCCTAACAAGAGTAATTACACAGGGAAGCGGAGAGTTAGACAGAGACCCAGAGAAGACTCCAAACAGGGGAAGAGAGAGGGGCTCTGGAGAGACTCACATCTCACTTATAAACAGAAAGAGTGGGATCTTGCCATACTAAGTTCAATTAAGGATACGTCTTAATTTATAGACCATCTAATCTACTtgggtggaaaaaaaactttcaaaatctttgcaaaaaagaaaaaaaaaatcatcagttACTTCGTTCACTGGTGTTAAAGATGTCATGTTTCATGTCACTATGTCTGTCCATTTGGGTAGTGCTCATAATGCCTGGCAGGACAAGTGCACTGACTGACAACATCGACGTGATGGTCATGTTGCCTCACAACAACACATACCTGTTCTCTTACCAGAGAGTTTCTCCGGCTATTCAGTACGCGATAAAAACCCTCGGCAGAGCAGAGTTTGCTGGATTGAAATTCAATGTGCAGTACGTGAACTCCGCGTGCGGGATGGACGCGCTGTACGCGCTCGTGGACAAGCAGAGAGACGAGCGTCCCGACCTGGTCCTCGGTCCGGTGTGCGAGTACACGGCCGCCTCGGTGGTCAGAGTGGCGTCGCACTGGAACATCCCCGTGGTCTCGGCAGGTGCTCTGGCCACCGGCTTTAGCTTCAAAACCACCGAGTACTCGCACATGACTAGAATCGCTCCGACTTACCTGAAGATGGCCGAGACGTTTCAGGCGATGTTCGGACGTTTCGGCTGGAGATCTGCGTATTTTATTTACGACGACGACAAAGAGGAGAGAAACTGCTACTTTACGATAGAGGGTGTTCATACGGTGCTCTCGGAGCACCACATCACCAAAGATTACGCCGTGTTAAACGTGCAGGAGGAGAGAGTAGATGCCGACGGGATCATCGCGTCCGTCTACGGGAGCGAAGtggtgATCATGTGTGCCAAGGCAGACACAGTACGAGAGCTCATGCTGGCGGCCCATCGACAAAAATTAACCAGCGGCAGCCACATTTTCTTCAACATCGAGCTCTTCAACTCCTCTTCTTATGGGGATGGATCCTGGAGGAGAGGAGACAAATACGACAGTGAGGCCAAGGCTGCATACAGCTTTCTCAACACTGTGACGTTGCTTAGGTCAACCAAGCCAGAGTTTGAAGACTTCTCCATGGAGATGAAAAAGTCACTACAGCAATCGGACATCCCTGTTTGTGAAGGCTGCAATGCTgTCAATATGTTTATGGAGGGCTTCCATGATGCTTTGATTTTGTACGCAATGGCCTTGCGTGAGGTGATGAGTAACGGTCTGACTAAAAAGGATGGACTGGAAATCACCCACAGCATGTGGAACAGAACATTTGAAGGCATTGCTGGCCAGGTGTCTCTAGATGCCAATGGTGACAGGAATGGGGATTTCTCTGTCGTTAGGATGACGGACCCAGAGGCAGGAACGCACGAGaCTGTCATGAGCTACTTCGGCACAAATGGAAGTTTCCAGATCATGCCGGGCTTTAAGAGGGAATGGTTCTCCTTGCGAACAACACCAGAGCCTCCACAACCAAAACCGAGTGACCCATCATGTGGACTAGGTGTATCAGCAGTGACTGGGATAATAGTAGGAGGAATTCTGGGAACAGCTCTCCTTTTGGCATTCTACTTCTTTAGGAAGAATTACAGGATAACCATTGAACGGAGAACACCTCGAGATGAGTGCAACATCGGGAAGCACCGTCAGTTGCGGGAAGACTCCATAAGATCCAACTTCTCGGCAGCGTAGTCTGTAGTCGTAAGTCGACTGCTGGGGTGTTCAAATTCAGGGAAGGTGCATCTCAAATGGGTCTTTGAGCTCATCAAACACCATCCCAGGAACCCAGAAATATTTATAGACATgctgtagtgttttttttccttgtaaaTGTCTCTTGCTCTTCAATTCGTAAACTCAGGAAAGTTGAATTATTGGAGGAGAAGTGCTCGCAAGGCTTCTTGACTGTCTGCAAAGAAAAAGGGTCTTTTTCTTATTTAGCTACCGACCTTTTTTCCCGCCAAACTCACCTTGGGGAAAACTGTCAGTTTTGTAGAAAACGGTCAGCTGCTGGGTCAATGAGGAGAAGCGGTTATGAGATATTGAGGACGGTAAGAGTGACACTCAGAATCTAAGCTTACTTTAAACGCAACACTCTCACTCATCTTAccttcctcttcttcctttAGAGAATGTCCAGTAGAACACACTGATAAACATCCATTCTTTCTTCTTTGTAGACTTTGTCAAGAGGCACTGATGAATACGAAACTGATGTGAACTTTAAAATGATGTTCCTCTCTGTCAACACGTATCAGCAAGCCTTGATGTATCAAATTTGGCTACACGCTGAAACActgaactgttttatttattatgataaattcagattttctaCAAGTGATTTCATTCATAGGTCTTAGTCCCACTAATTATAGTCCAATATAATTTCAGCTATTTTAATTTACACTGCCATGTACAGTATCATACACGCTGCTGGGTGCCTCATGACCAAATGTTGTTCGACTGGTCTTCACAGTTATGGATTCAAGATTCAATTGATAAAACCCACTTAAAAAGTGTCCAAATGCCAAGATGTTTGAAGaaaagtaaatgcataaaaaagcgTACTATAAGGTCCACCATTACCTTTTTATGTCAGTTGTCTTGTACAGCCCGTTTGTTGCTCAACATCACGCTTTTTGAATGCAAGATAGAGATTTAAAACAAGACGATTCTACTTAAATCATGGCTGATACATCGTCGTTCATCTTCCTGCACTTGGTTGCATCCGTGAAGGTGAACTTCAGAGGAAAAGCAATTTCTTCGGTTGTCAGGAAGTTATGTAATAGCTATAGAAATAAGtcacaaaatgattttatacaCAACACAAGCCGGTCTACCTTTCAACAACAGATTTTGAAAAGCTATGTTCAATTTATATTGcacatgtacatttttgaacTTTATGTCTTTAGATTGTCTTTGTCAGGAGGTGGTTATCAATAATCTATCAGTTTAATagcatataaagtatatttttaacatttgtgatGATTCAGTAATGATGATGAGATAAATGTGAGGTGTCGCATTAAAAATCATCTCTATGGGTTTGTgcgtccaaaaaaaaaaaaagacctagGGTTTTATTCAGGCTTGGTATGATGGCAATTGTATACTGATGTAAGTAAATGTATCAACATAAGATGTGatgttatttattgatatttttgtagAGGTTTCATTTTCCTTAGTGttgattttaacattgtttCTTGTGTGAAATATACAGAATCCTTTTTGTAAACAGTATATCTGCCTTGTCAGAGCAAATTTTACCTGATAAGTATATTTACAAGGCTTTGTAAACACTCTGAAGAATTGTAACTTATTTAGATTGATACATATTGACCAATTAAAAGgaaaatttatgaaaatgaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54241 lncRNA downstream 180658 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 444395 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 468951 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 651063 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 697623 14652095 ~ 14652393 (-) True G36631
TU54472 lncRNA upstream 194309 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 194735 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 196685 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 336339 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 346262 15713675 ~ 15713975 (-) True G36986
XM_043238862.1 mRNA downstream 41576 15293856 ~ 15308440 (-) True zfr
XM_043239960.1 mRNA downstream 57134 15280214 ~ 15292882 (-) True mtmr12
XM_043239676.1 mRNA downstream 70744 15268676 ~ 15279272 (-) True golph3a
XM_043239713.1 mRNA downstream 85071 15205951 ~ 15264945 (-) True pdzd2
XM_043239714.1 mRNA downstream 104118 15205951 ~ 15245898 (-) False pdzd2
XM_043238413.1 mRNA upstream 83611 15451024 ~ 15457371 (-) True eef2l2
XM_043239300.1 mRNA upstream 104679 15472092 ~ 15477073 (-) False akr1a1a
XM_043239301.1 mRNA upstream 104679 15472092 ~ 15477073 (-) True akr1a1a
XM_043240356.1 mRNA upstream 112767 15480180 ~ 15493670 (-) False dnajb5
XM_043240355.1 mRNA upstream 112767 15480180 ~ 15493594 (-) False dnajb5
XR_006250970.1 other downstream 41576 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 85071 15205951 ~ 15264945 (-) False pdzd2
TU53907 other downstream 1047635 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 1293311 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 1293311 14045477 ~ 14056705 (-) True rnf214
TU54482 other upstream 205698 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 205845 15573258 ~ 15574817 (-) False alkbh2
TU54499 other upstream 336339 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 357614 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 359369 15726782 ~ 15727910 (-) False emc6

Expression Profile