RNA id: XM_043240689.1


Basic Information

Item Value
RNA id XM_043240689.1
length 3997
RNA type mRNA
GC content 0.42
exon number 10
gene id rnf215
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5008086 ~ 5013941 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGACAATAAAAGACCACGatgttatttttgcatgtgcatCAAAGTGACGGTTTTAGCACGTATATCAAACAACGTGTTGAATTTTAAGGATTTTACTTCGCAAAATGCTGTATCTAGTCGTCATTTGAAAACGGGCTGTTTTTGAAGAACCTAGGTCATCTAGCTATCGttgcattttgatatttttgaattCACGATTAGGCGTATTTTATTCGAAACGgttttaaacacaaatatatgtttatagaCAAAAGGTGTTTGCCAAATTATAGACAAGGACTGACTTTGTCAATAAagatagtaaaataaattaatcgtAATGCCAATTTTCGCGCGTAACGTTACATAactattgactttttttttacagtaacacctattataattattttaagtgtaCAAGTTAAAAGCTTAATAATGATGCAGCTAAAAATGcgatttaaaactattttactgtTTCCCACTGGGTGGCGAGCgcacgtttttatttataacggCCGTGGTGGAAATATGAAATACAGACATAGAAATCGAAATATACAGGAAATGCGTGTACAAAGACAAGGATCACTAAATGGGCGGAGCTTGGTGTGCTGTAAAGAATGATTGGACCACGCAGCGCCCCCTTACGCGCTTACGCGAGTTTACCGCCGTCTGTAAGGACAGTTTCCATTCTTGCTAGTTTCACTTTCGCAAGCGCAGGCAAGGGAAAAGCGAGCCGCAGAAGAAGAGCTCCACTCAGTTTGTTTACATCAGCAGGAGGTGACAGAACAGAGGCAGCTCTGACAGTATGGCTCAAACTTTCAGTCTATGACTTGGTGTGATTTATGCCATCGACCGACCGGGAGTCATGGGCGAGTTAGCTTGTCTTTCTGTGCTGTGCTGGCTGTGGCTTTGCCCGGTGGTGTCCGGCGAACAGGTGGCTTTTGTAGAGGTGTTTCTGGAAGACCATCGGGATGTTTTGCAGGGTGAGGTGGTCCAGGGGAGTCTGGAGGACGACCCCGTGGAAAAccacaacaaaaagaaacatgaCCTCAACGGAGACCTCGTTTTAaTAAAAAATGAAGCTATTAAAACCAACAGTGAAATCAGTGATGGGAAGGATCCAAACCCCTGGATTGGAGTGGTCCCTGTCCAGATGGAGGAAGGCACAGTTTCCAGTAACAGCAACCAGGAGTCGTTTGCTGCCTCTGTGGTCAATAAGATGAAACGTGCTCTTGTTTTGGGTGCATCAGCTCTGATCATCCTGGCTTTAAACCAGAATACTGTCCGGGAGATGGATCTCTCTCAGGTCCTCTCGAAGCCAGTCATTATCATTCAGACGTCAGAAAATGTCACTAAGCTCATTGGAGCACTCCTCAGGGGCCTTCGCGCAACAGCAAAAATCACTTACAAGTCTTTTCTACAGGACAGTCTGGGGGCCACCTTGACCCTGTGGTCCAGCTGTGGCCGTTCGAGAGGAGGGTTGTACGGGGAATGGCAAGGGGTCATCTGCACCGGGGAGACCAACTCTCAGGTCCAGAAATATCTCCAGCAGCTGTGGAACACCGTCGTTCTGGTGGCCCTGGTCCTCTCCACAGGGGTCATAGTTCATGCACGCTGGCAGTATCAGGACAACCAGTTTAATGATGACTTGGAGTCAGACCCGAAGCAAGACGTTTTAAAGAGATTATCAGCACTGAAGACAAGGATATATCGGCAGCCCAAAGCGAGATGCGACCCAACACAAGCTCAGCCGGTGGAGATGGACAGCTGTGCAGTTTGTTTGGAGCAATACAACAACCACCAGTGTTTGAGGGTGTTACCTTGCCTCCATGAATTCCACAGAGACTGTGTAGATCCCTGGCTTCTCCTTCAGCAGACCTGTCCTCTCTGCAAACGTAGCGTGCTCGGTAATTTTTATTGAGCTGGACCAGGAAGGACTCCGGATTATCGATTTGTATGAATCGGATCGACTCTCTTCCGATTCAGACTTTTCACGGCAACTAAACCCCTCCACCGTACCGTAAGGTCAGAATATCTCCGTTTGACCTTTCCAAAGACTATAAACCTTGAGCTCTTTTTCAAGAGACCCCAGGACTTGTTCCTGATCTTTGCTCAAACCACTTGAGAAGTTTCTTGAAGGCAGATCCTTGCACGTGGGATCGGTTCTTTTGCGCACAGGACTAGTGTTCGTTGAACAGGCTCAACAGTTCCAAGATACACGGATTGCGAAGACATATGCACAGCGAAAAACACAAGTAATATTTTAGTTCTCTTCAAATCAAGGACGAATCATGCACCGTCAAGGGTTTGCATAAAGTTTGGATACTTggaaggggagaaaaaaaaagaaatagtcaTTAGATTATCACTTAAAACTTTTCCTTTGATACGAGACCAGGGGCCAGTTGCATAAACTTAGTCACCATCTTCAGACTGCGTCTTAGGAACTAGTTTGACCGACTAGCAGTTGCCAAAGTGGTAATGAGTCTTACTTCTCCAGTACAATTAAGACTTTTATCGtaagtgaataaaacaaattatgacCAGTCTTGAAGAAAATGGCTAACTGTTTTGCAACCTGCCAGGGCTGGTTCCTGACCTGGCTCTTTTTCGGTTGTGACCTTGACATCTTTTGAAAacgtataaaatgtttttagaccTTTAAGCAGAAACATTatgattatgtttgtttttggacaGGTTGTGCGGTAGAGCCCCGCATGACCAAAATCTTGATCAtgatcttaaaaaatatttacagactgcaagtgcatttacatgcattttagaaGTTCGTTTTTTTAGATGGCATGTAAATGCTTCATTCTAGTCAGGTTTTTCAGTGGTTGGACTAATTGACCTTTGACCTACCGTTAATAAGTTTACCGAAtcagtttaaaaagaaatgaacccTTTTAGTCAGAATATACTGAAAACTTTATaagcattataaaatgtataatatttacagaattttaaaagatttgaaaGTTAATTTCCGAAGAGCCACGGAACATTGAATACTGGAGCAACGTCTactaaaaatgcagctttgccatcacagaccTCACATGataacacttatttttaaatgtactaaaatagaaaatattattatgaaattttgAGTAAACGTTAAAATGACAACTCAGTTGTAGCTCAGCAAGAGTTGGCCCCAAAATATGTGTTCCTAATCCTTTCCATTTGTAATTAGACATTGTGTCATAAATACTTGAATGGATAGATGAAGGCTGTAGCTCGTCTATGCAAAAACCTGCTGTAGCTTCATTATATCTCCGCGTGTTAATGTACTTAATGATACAATATCGGTATATGGAGTCTCaagacagccaatcagagcatcTCGATCTGTGGTTATGCCAAATTTCCCCTCTGTCTTGAATCCACGATATCTCAGGAGGGCGCCTTGCCAGACAGGAAGACAACCATTACGTCACATTAAACACTCACACAAAGAGGAACAATGTAGAAACACGTTCttaagaacagtatttattcttgttttatcTTTCAAAGGCTCGCTTTATGTCAAAAGCTTTCTCAAATAAGCTTTCTTTTACAAAACGCTTAGAATGTTTCCTAGCGAGCAGAAATATGTTGCTCTAAATGGCAAGGTAACGTTGCCTGTTCAAAGTCTGTAGGAGGAAAAACGATGTCTCTCTCTGCTAGAATGACAAATGCTCGCAGCCTTTGGCACAAAATGACGTGTGTGTGACTCCACAACCTCCGACAGGGAGGTTTCTCAGAAACACTGCTCCGAGGTCAAGTCTTAATAGCTTTTTGAACCCTTAAAGAACTGGAAACAGGATCTTATGAGCTGCATTTTTGCTTCGATATTGTAACGTACCACATCTTTTAAGTTCCTTCtcagatttattttagatgctACATTCACAAACCTGATGTTCCTTTATTTATTGAACTTTCTTTAACAGTGCAATAACTGTTTGTATCTCTGTTCAATAAACTCTTGTGTTACAGGGCAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49044 lncRNA downstream 92335 4913881 ~ 4915751 (-) True G33310
TU49028 lncRNA downstream 105684 4859999 ~ 4902402 (-) True G33300
XR_006250997.1 lncRNA downstream 956614 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 956617 4050915 ~ 4051469 (-) True LOC122345411
XR_006250999.1 lncRNA downstream 1039122 3967856 ~ 3968964 (-) True LOC122345413
TU49071 lncRNA upstream 11004 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 18622 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 20170 5034111 ~ 5053903 (-) True G33333
TU49076 lncRNA upstream 61820 5075761 ~ 5076034 (-) True G33334
XR_006251035.1 lncRNA upstream 128637 5142578 ~ 5169249 (-) False LOC122345808
XM_043240688.1 mRNA downstream 7030 4949084 ~ 5001056 (-) True zdhhc8b
XM_043239098.1 mRNA downstream 60133 4927327 ~ 4947953 (-) True si:dkey-112e17.1
XM_043238166.1 mRNA downstream 450242 4487841 ~ 4557844 (-) False galnt9
XM_043238165.1 mRNA downstream 450243 4487841 ~ 4557843 (-) True galnt9
XM_043238167.1 mRNA downstream 485252 4487841 ~ 4522834 (-) False galnt9
XM_043240589.1 mRNA upstream 155771 5169712 ~ 5333504 (-) True si:dkey-215k6.1
XM_043240048.1 mRNA upstream 337505 5351446 ~ 5380269 (-) True aacs
XM_043240187.1 mRNA upstream 369614 5383555 ~ 5388325 (-) True LOC122345752
XM_043238772.1 mRNA upstream 374878 5388819 ~ 5393629 (-) False poli
XM_043238771.1 mRNA upstream 374878 5388819 ~ 5393629 (-) True poli
TU48850 other downstream 385028 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 815005 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 815005 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 815005 4144927 ~ 4193081 (-) False LOC122346168
TU48804 other downstream 1113611 3885550 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 417323 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 942358 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1810230 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1909489 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1916931 6930872 ~ 6943203 (-) False usp20

Expression Profile