RNA id: XM_043240691.1


Basic Information

Item Value
RNA id XM_043240691.1
length 4901
RNA type mRNA
GC content 0.46
exon number 34
gene id stag2a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11233407 ~ 11249164 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgggtgtgtttgtgtgtggatgCTAGTAtgtgggtgtgggtgtgtgtgtgtggacgcgTATTAAGTGTGTTTTGGGTTTCTCGCGgccgtatttttttttactcctgtCCGCCCATAGAAGCAAACTGATTCTTCCAGCTACGAAACACAAACAGAACTGAGCCGGTTCTACTTGGAACGTATTTTAATGTCTTAACCACGGAACTCCGGTCCGGTTCGGTACCGttcggcggcggcggcggcggcggcagcaGTTCTGGGCGGTTTTTGATGCTGCTAGACTCACGCTGAGGGAGCATGTGTTTTTCAGCTGTGTGGGTCTGTCTGTCTACTGCAGTGTGGGGACACTTATAAACTCCAGAAGAAACGGAAGATGTTGACAAAATGATAGCAGCTCAGGACCTTCAAACAGACTTCCACCAggaAGGATACTCTCGGCTCTTGGACACTGATCTTGAAGATCTCGAGGGTCGGAATGGCAAATCTGGGAAAGGAAAGAAGGGGAAAAAGACTCCTGGAGAGAAGTCGAAGGGGTCAGAGGTGAGAGGTCGGGTAAATGGCCACCATCAGGAGAGTGATATGGAGAATCTCAGTTTGTTTGAGATTGTCAAATTGGGCAAGAGTGCCACACAGtcaGTGGTTGATGATTGGATTGAGTCCTATAAGATGGACAGAGACACCGCTTTGCTGGAACTCATCAACTTCTTTATCCACTGCTCTGGATGCAAAGGTGCTGTGAGCTCAGAGATGTTTCGGCACATGCAGAATTCTGAGATCATCAGGAAAATGACTGAAGAGTTTGATGAGgaCAGTGGTGATTATCCGCTGGCAATGGCAGGTCCAATGTGGAAGAAGTTTAAATTAAGCTTGTGTGAGTTCATCGCGGTTCTGGTTCGACAGTGCCAGTATAGCATCATCTATGATGAGTACATGATGGACACGGTCATCTCTCTCCTCACCGGCCTGTCAGACTCACAGGTCAGAGCGTTCAGACACACCAGTACCCTGGCAGCCATGAAACTGATGACCGCTTTAGTGAATGTTGCTCTGAATTTGAGTATTAATTTGGACAACACACAAAGACAATACGAGACAGAACGCAACAAGAGCATCGGGAAACGAGCCAATGAACGCCTGGAGCTCCTGCTGCAAAAACGCAAGGAGcTCCAGGAAAACCAGGATGAGATTGAGAACATGATGAATGCCATTTTTAAAGGAGTATTCATCCACAGATACAGGGATGTGATTGCTGAGATCAGGGTTGTCTGCATTGAAGAGATTGGTATGTGGATGAAGATGTACAGCGAGGCTTTTCTTAATGACAGTTACCTGAAGTATGTGGGCTGGACCATGTATGATAAGCAAGGTGAGGTTCGTCTGAAGTGTCTTACTGCTCTTCAGGGTTTGTATTACAGCAGAGAACTCAATGCCAGACTGGAACTCTTCACCAGCCGCTTCAAGGATCGAATCGTTTCTATGACTCTAGATAAGGAATATGATGTTGCTGTTCAGGCCATTAAGCTCCTGACACTGGTCCTGCAGAGTAGTGATGAGGTTTTGACAGCAGAAGACTGTGAGAGCGTCTATCACTTGGTTTACTCTGCCCACCGACCGGTGGCCGTCGCAGCAGGGGAGTTTCTCTACAAAAAGTTGTTCAGTCATCATGGTCCAGAGGATGAGGGGCGGCCCAGGAGAGGCAGACAGTGTTTGAATGCTAACCTCATCAGAACGACTGTCTTGTTCTTTCTTGAGAGTGAGctgCATGAGCATGGTGCCTACCTGGTGGACAGCTTGTGGGATTGTGCGTCTGAGCTGCTGAAGGACTGGGAGAGTATGATCAGTCTGCTGCTGGATGAACCTTACCCTGGAGAGGAGGctctcACTGATGCTCAAGAAGCTGCTCTGGTTGAAATCATGCTCTGTGCTGTCAGACAGACCTGTGAGTGTCACCCACCCATCGGACGAGGCCCTGGCAAAAGGGTTCTGACagctaaagaaaagaaaactcaGTTGGATGATCGAACAAAGATCACAGAAACATTTGCTGTGGCTCTGCCTCTGTTACTGACTAAATATTCGGTGGACCCAGAGAAGGTCACTAATCTGTTGCAGTTTCCTCAGTATTTCGATCTAGAGATCTACACAACCGGTCGGCTGGAGAAGCATCTGGATGCTTTGCTGCGCCAGGTCCGGGATGTGGTGGAgaagcacacagacacagatgtGTTAGAGGCATGCTCCATGACATTCCATGCACTGTGCAATGAGGATTTCACCATCTATAACCGTGTAGATATTGTCCGCAGCCAGATGCTTGATGAACAGATTGATAAGTTCCACCGACTGCTGGAGGATGTTCTtcaggagGGAGAGGAGCCTGATGAAGATGATGCCTATCAAGTTTTGTCAACACTCAAAAGAATCACAGCCTTCCATAATGCCCATGACCTCACTAAATGGGACCTTTTCACCAGCAACTACAGACTTTTGAACTCTGGTCTGCAAAACGGAGATATGCCTGAACAGATTGTGGCTCATGCACTCCAGTGCACTCACTATGTCATACTCTGGCACTTGGCTAAGGTCTCGGAGGGCAGTGGCAGTAagGATGATATGGTGCTGTTGCGGAGGCAGTTGAGAGCCTTCTGCATGATGTGTCAGAGGTATCTGAATAGTATCAGCACTGTTGTCAAGGAACAGGCCTTCACCATTCTTTGCGATGCACTCTTGATCTTCAGTTATCAGATTGTGGCTTCGGGGCGGGAAGCTTTAGAGCCCTTGGTGTTCAGTCCTGATGCATCCTTACAGAGCGAACTAATCAACTTTATCCTTGATCACGTGTTTGTTGATCAGGATGAAGACAGCAGCACAGATGATGAGGCTGGTAAGATTGAAGCGCTCCATAGACGCAGGAATTTACTGGCCGCCTTCTGCAAATTAATCATCTACAATGTGGTAGAGATGAATACAGGAGCAGATATCTTCAAACAATACATGAGAtACTATAATGATTACGGAGATATTATTAAGGAGACCATGAGTAAAGCACGTCAGATCGACAAGATTCAGTGTGCCAAGACTCTGATCCTCAGTTTGCAGCAGctGTTTAATGAGATGCTGAATGATCTGGGCTGTAACTCCGATCGGTCCACGTCTGCATTCTGTGGGATTAAAGAACTGGCCCGACGCTTCTCACTCACGTTTGGACTTGATCAAATCAAAACCAGAGAGGCCATTGCAATGCTCCACAAGGATGGAATAGAATTTGCCTTTAAAGAGCCCAGTCCACAGGGAGAGGGTGGCCCTCCTCTCAACCTCGCTTTTCTTGACATCCTCAGTGAGTTTTCCTCCAAACTACTGAGGCAGGACAAGAAGACTGTGCACCTGTATCTAGAGCGGTTCATGACCTTTCAGATGGCTCTGCAGAGGGACGACTGCTGGTTACCACTCATCTCCTACCGTAACTCTCTGCAGGCGGGTGCTGATGATGACACGCTTTCTGTCATCAGCGGTTTGAGCAGCAGGAGCTCCTCCCGCAGTCGCAGGAGCAAACCACTTGCTGCCAACAAGAGAAAACTACCCGAGGAGGAGAGCAGCTGTAGCAGCAGTGATGTGAGCATGTGGGTAAATCGTGAGCAGAGTGGCCCACACACTCCTGTAATGATGTCATCACCCCACATCGTCTCTACTGTCCAGCGGGATGCAAAGAAGCTCCGGCCTGAGCAGGGGTACATGGGAGTTTATAGCATGAGCAACGAAACGCCACACACAcctctgcagcagcagcagcagcaccaaAACATGGACTACAACTCTCAGGTCGCGTGGATGATGGCCCAGAAACAGCAGCATGAAAGAGCAAGCCTGCAGTATGGCAAGATGAGAGGCCACATTCAGCACAACATCCGGCGTGGCAGTGGGCTGATGGAGGATGATGAGGAACCGATTGTAGAGgatgtgatgatgtcatcagagGAACGATTGGACGACCTTAACGAGGGCATGGACTTCGATACCATGGACATTGATCTGccTCCATCCAAAAACCGCAGGGAGAGATCCGAGCTTAAACCAGACTACTTTGACCCTGCTTCTATCATGGATGACTCTgtCCTTAATGTCTCCATGTTCTGAGATGGGTCCGTGAGAGCCGTGACATGTTTTCCTCATCTGATTTCACTCCATGGACTAAATGCACATGATGGTGCTGCGTATCTTTCCCTCCTGAAAACACACCATAGCTTTCCATCTGTACATAATAACAGCCCACAGGGCGACAGACATTTTTAGCATGAGATCAGACTTATCTATTCATGCTCTTTTGTAATGGAGGTTTAAATAtagctgggttttttttgtaactcCTGAAGGAGTTTTGATTTTTAGATAATTTTGTAAAGACAATCAATTGTAAATGACTTTATAAAGGgtgatttaaatctaaaatttatAACTCAACTTTCCTTAAAGGGTTTAGACTTGCagtgtctctttttttccacagtacctttctccctctcttttttaaattcatcaatcatgttttcatttctcaCAAGCCTCATATTTTGATGATGTTTTTCAATACTTACTTGACTGAGTTTCTTGGACTGAAGGTCTTTTAAAGGTCCTTTGAGAACTCTAAGCACTTGTACTTATTGGCTAAAACTTAGAAAGCCCACCCCTCCCTTAGagttaaatttgttttttgttgttttttttggtcaacttaaaatttcaaaggTATTTCTGCATTAAGGGCATTGCCCCCTATTTTCACAGAAAAGCTCTTTCTGTAGAATATatctaatttctttttaaatattagaaatagatattataatatattgttatatatctaaaaaaatatatatatatataaataatatatatata

Function

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51940 lncRNA upstream 24002 11206316 ~ 11209405 (+) False G35274
TU51941 lncRNA upstream 24953 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA upstream 24953 11206316 ~ 11208454 (+) True G35274
TU51930 lncRNA upstream 45713 11187254 ~ 11187694 (+) True G35267
TU51914 lncRNA upstream 86165 11137052 ~ 11147242 (+) True LOC122346180
TU51957 lncRNA downstream 45543 11294707 ~ 11303431 (+) False gria3a
TU51991 lncRNA downstream 133506 11382670 ~ 11387096 (+) True G35304
TU51992 lncRNA downstream 135727 11384891 ~ 11387096 (+) False G35304
TU51993 lncRNA downstream 135727 11384891 ~ 11387170 (+) False G35304
TU51998 lncRNA downstream 156364 11405528 ~ 11405761 (+) True G35309
XM_043240692.1 mRNA upstream 413 11223954 ~ 11232994 (+) True acsl4b
XM_043240693.1 mRNA upstream 10587 11218523 ~ 11222820 (+) True cwc15
XM_043240523.1 mRNA upstream 15662 11210376 ~ 11217745 (+) False fam76b
XM_043240522.1 mRNA upstream 15662 11210377 ~ 11217745 (+) True fam76b
XM_043239778.1 mRNA upstream 29181 11198211 ~ 11204226 (+) True mtmr2
XM_043240932.1 mRNA downstream 1461 11250625 ~ 11259480 (+) True cchcr1
XM_043239765.1 mRNA downstream 17478 11266642 ~ 11292178 (+) False gria3a
XM_043239764.1 mRNA downstream 17481 11266645 ~ 11300412 (+) False gria3a
XM_043239766.1 mRNA downstream 17501 11266665 ~ 11303402 (+) True gria3a
XM_043239763.1 mRNA downstream 17509 11266673 ~ 11303402 (+) False gria3a
XR_006251083.1 other upstream 171093 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 300244 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 502355 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1115281 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1434049 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 675064 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 999974 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 999974 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1264912 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1454207 12703371 ~ 12705241 (+) False iscu

Expression Profile