RNA id: XM_043240695.1


Basic Information

Item Value
RNA id XM_043240695.1
length 2207
RNA type mRNA
GC content 0.43
exon number 3
gene id hspb1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31498489 ~ 31503030 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCAAACCGGACGCAGAACAAAGTTCAGCCATGGCCGAGAGACGCATTCCCTTCACCTTCATGCACGGCCCGTCCTGGGACCCTTTCCGCGACTGGTACCAGGGCAGCAGGCTCTTCGATCAGACCTTCGGGATGCCACACTTCTCCGAGGAGATGCCCACCTTCCCCAGCACGCACTGGCCGGGATACATCCGGCCCTTCGGGTTTCCAGAGATGGCCTCTTTAATGCAGAGCCCGGTGGCTCAGGTGCCCATGTCGCCCCCGGCCTCCGTCGTCCACCCCCCGAACTACGGCCGGGCCCTGTCCCGACAGATGAGCTCGGGGATGTCCGAGATAAAGCAGACGCCGGACGCCTGGAAGATCAGCCTGGACGTCAATCACTTCGCCCCGGAGGAGCTGACGGTGAAGACCAAGGACGGGGTGGTGGAGATCACCGGCAAACACGAGGAGAGGAAAGACGAACACGGCTTCGTGTCCAGATGTTTCACCAGGAAATACACTCTGCCCTCTGGTGTGGACTCTGAGAAGATCAGCTCGTCTCTGTCTCCTGAGGGCGTCCTGACGGTCGAAGCTCCTCTGCCCAAACCTGCCATCCAGGGCTCTGAGATCAACATCCCCGTCAACACAAGCAGTGCAGTGACAAAGAAACCCTGAgcactacaacacacacacacacacacacacacacacacacacacacacacacactggctgaTCACTGTGTTACTTTGAGTTTGTTTTCTTCAGCATGAACGCATATGTTCTATATTAATGTCTTGATACTTCTTTGTAAAAAGCAGGTAGAAGAGGAGAAAATGCTATATTGCATTCCCATCTAATTTTTAATAGCACTCTTTTTCATCAGTCTCTGTATCATCCTTCTCAACTGTGTACACACAAATCACTAAAAAACATGCTCATATTTAATCCCTGAATCGAAAagtctaaaatatatatgtgtgaatatatatatatatatatatatatatatatatatatatatatatataatgcaacatTGAAACATATTACCCCATCATTGAAATCGACATTACATGTTGAAGAACAAAATAAAGGACAATTGTGCATGTAGATTCTGGTAGCATtggtttatatatgtttttatattgtctgGAGGGTTTGATTTTActgaatgtgaatgtttttgcaCTACAGTAAgaattgaaaaataatgcaacGATGCAAACGGTcctaaaatatggaaaaaaaacccgATTTTGAGATGAACTACGGCCATGACGTTTCTTTAGGAGCTTCACAAACCTGCAGTTTCAGCATATGCTGGTAAACCATAAAGACTCTCATATGAAACTGAAAACGAAGGACAGCCTGTTTCCGTttgaaatgagagaaaaaaagaagtttaCTCTTGATTTTTATCATAGAAATGCAGGCTATCATGGTCGTTTCAGCAGAGAGTGTCTTCAGATCGCTCTCTCTTGGTTTTGTGAGGCattacataatgttttaaatgactgtaaTAAAGGCTTTCCCGTCATGAGCTGTATTTCTGAATATCCTCACGGTGGAGTTGGGAATAAACATCTTCAGGCAGGCTGGATTATCTGGTGTTTATCTCTCTGATCAcaactatttaattttacatttttaccatatttaaatGACACAAATCCCGACAGCACTTGCTAAGTCACACAACAGGAAAGCGTTTAGTCACATATTTCACCAATGCAAACATAAAATCGATACGATTATTGACTGTAACTATACGGGTTGCCTTAAAATAGCACTGATGAGACGGAAACTGGTAGAAACCCCTTTAATATGTAACGCGCATTGTGGGAAATGTATTATGCATCATGCACTTGATAGTGTAGTCATGCATGCTTCATCTACTGAAGCAGCATCTGTATGCATGTTTCATGTTCACCGCACACGCTTTTCATCACTGTGTTAATATCACCCTTGCATTTCTGCGGTGAACGCATTACAGAGGTTTTTAACCCAGCGTGGTGCTTCAGGAGATAGTTGAGATCTGAAGGAAACTGCGCTGATGAACTGTATTGATTCTGACAGCTCTGAACAAAGATTGCCTGAGTGCATGAGCCAACAGACCACTCAAAAGTGCAATGTGCTGTTAGCATTATGTCATTTTAGATTGTCGTTCGTTTCATGTTCATTTTGCATATTGAAATGATGACGCGTTATAAAGGCAATgacgttt

Function

GO:

id name namespace
GO:0009408 response to heat biological_process
GO:0046685 response to arsenic-containing substance biological_process
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04455 HSPB1; heat shock protein beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251025.1 lncRNA downstream 395 31456500 ~ 31498094 (-) True LOC122345708
XR_006251024.1 lncRNA downstream 395 31461934 ~ 31498094 (-) False LOC122345708
XR_006251026.1 lncRNA downstream 395 31477391 ~ 31498094 (-) False LOC122345708
TU60685 lncRNA downstream 3220 31435649 ~ 31495269 (-) True G40996
TU60460 lncRNA downstream 151466 31331349 ~ 31347023 (-) False LOC122344987
TU60767 lncRNA upstream 143828 31646858 ~ 31648612 (-) True G41034
TU60752 lncRNA upstream 152553 31655583 ~ 31701818 (-) True G41023
TU60737 lncRNA upstream 180938 31683968 ~ 31684836 (-) True G41019
TU60730 lncRNA upstream 188836 31691866 ~ 31695788 (-) False G41018
TU60732 lncRNA upstream 188836 31691866 ~ 31695788 (-) True G41018
XM_043239725.1 mRNA downstream 43981 31369810 ~ 31454508 (-) True LOC122345520
XM_043238678.1 mRNA downstream 148040 31346959 ~ 31350449 (-) False LOC122344987
XM_043238677.1 mRNA downstream 148040 31346959 ~ 31350449 (-) True LOC122344987
XM_043238259.1 mRNA downstream 301522 31191163 ~ 31196967 (-) True ca4a
XM_043238526.1 mRNA downstream 343376 31142577 ~ 31155113 (-) True gusb
XM_043239952.1 mRNA upstream 3449 31506479 ~ 31567684 (-) True srrm3
XM_043239951.1 mRNA upstream 3449 31506479 ~ 31567681 (-) False srrm3
XM_043238268.1 mRNA upstream 65750 31568780 ~ 31590397 (-) False LOC122344718
XM_043238267.1 mRNA upstream 65750 31568780 ~ 31590393 (-) True LOC122344718
XM_043238269.1 mRNA upstream 91447 31594477 ~ 31598310 (-) True LOC122344719
TU60335 other downstream 672131 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 672131 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 705770 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 801801 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 199423 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 218240 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 619254 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 711246 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 711262 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile