RNA id: XM_043240700.1


Basic Information

Item Value
RNA id XM_043240700.1
length 2578
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC122346048
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1865595 ~ 1876048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACCCCATCAACATCTCAACATTCCTTCCTGTTGGAACATTACCGACGTCAAAACATTGTCTCCGCTGAGCCGCCCCATGCAGCGTATCCACAGCTCTGGGGTGGACGGGGGAAGAGCGGAGGCGTTGCTGCGAGTGCCGTTCGAAGGATGTGGAGATCACAGGAGCTCGGTCTAAACAAATCACTGCCCCGTGTGGCTGTATCTTGCATGTCTACATCAGAGAAAGAAAGCCCTGGAGCTGAACAGCGGGAGAAAAAATTCACAGCCCATCGGAAGTTTGGCGATCGTCGTGAAGGCGTGACAAGCGCTCGTACTTATTTCTATGCCGATGAGGCCAAATGCGACCAACACATGGAGACTTTCCTGAAATGCATCAAAGCCTCGGGTGGAAGTTCTGAAGACGGTTTCTCGGCTATTAAGATGACTGCCTTGGGGCGACCACAATTCCTGCTCCAGTTCTCCGAGGTGCTGGTGAAATGGAGACGCTTTTTCAGTTTCCTTGCTGCCAAGCAGGGGAAAGACGGTGTGGAGGTGCTGGAGCAGAAACTGGATCTGGAGCAATTGCAGACTTGTCTAGCTAGACTGGGAGCTCAAGGCAACATTCAGAGCTGTTTCTCTGATGGACGACTGCACTCATCAGGCATGGTGGACATGCTGGACTGGAACCGCCTGATCGACGAGAGAACGAAGATATCTGATCTGCTGGTTGTCCCGAACCTGGAGACTGGTGAGTTGGAGCCTCTTCTGTCCAAGTTCACAAAGGAAGAGGAGAGGCAGATGAAAAGGATGCTTCAGCGACTGGACGTCTTGGCTAAGCATGCGGTGGAAAATGGCGTCAGGCTGATGGTGGACGCCGAACAGACGTATTTCCAGCCTGCCATCAGCAGACTCACTGTGGAAATGAAGAGAATCTTCAACAGAGACAAAGCTGTCGTTTTCAACACCTATCAGTGCTACCTCAGAGAGGCATTTGATAATGTGTCCATGGATGTGGAGCTATCAAGAAGGGAAGGCTGGTGTTTCGGTGCCAAGTTGGTAAGGGGGGCTTACATGTACCAGGAGAGAAGCCGAGCTGCAGAGATTGGATACGAAGACCCCATCAACCCCGACTATGAATCCACTAACAGAATGTACCACAGGTGTCTGGAGTATATTCTGGAGGAGATCAACCACAACAGGATGGCCAATGTCATGGTGGCGTCTCACAACGAGGACACGGTCAAATTCACGCTGGACAAAATGAACGAGATGAGTCTCTTTCCGACGGAGAACAAGGTGTACTTTGGCCAGCTGCTGGGGATGTGCGATCAGATCAGCTTCCCGCTGGGTCAGGCGGGGTTCCCCGTGTACAAGTATGTGCCGTACGGCCCGGTGAACGAGGTCATCCCGTACCTGTCCCGCCGGGCGCAGGAGAACCGCGGCTTCATGAAGGGCTCTCAGAGAGAACGCAGTCTGCTGTGGAAGGAGCTCAAGCGCAGGTTCTTCAGTCGACAGCTGCTCTACAGACCCGTCTACTAAACCTGACGTCTGCTGCGCTCTCTCAGTTTCTCCACACCGAGCGGACATCTTGTAGGTCTATAGTTCGTCATCAGCGGCTTTGAAATGAACTGGAGTTAAAGACAACATGAAACTGCATTCGCAATGCCTTAAACTTCTGCAGTGTGACGTGAAAAACAGAAAGTGAAACAGTGGAACTTAATTTGAGAAAAGGAAACCTTTTTAGTAATATCTTGTTTTTCTAGATCAacagatgatttatttatttttttacgaagaaattaaataaaaagcaactcATTGGCacttagcaaccgcatagcaacaccctagcaatcaCCCTGGATATCTTAgcgactgcatagcaacaccttggcaaccacaataaaaaaattcaaactttaagcttttaaaagtacttttaaactTCAAACCATTTCAGACTGAAAACCATCAAaccccagtttcacagacaaggcttaaacctagtcctagactaaaatgtaaatctgagcggtttcaactgaaagaaactcaGAAGCTCGCAAGAGTGATCTTAAAGCAtttcagtgcctttgttttgtcttaagatgcacaccagtaatgttttattttttttttcgaaaacatgtttgaaaattactttaatgtcctaattgaactatggcttTATCCTTGCTTAGGCTAACCCCCGTCTATTAAACCGGACCTTAAACCTCTTAAACTTTTAATCTTTTCAATCGTTTTCAATCTTTCTGGCCAACGTAACGTTTGACTTgagaaacctttttttcaattattttcaatCTTCTATTTGTCCTACACACTTATTGGATCTAATAtgcatttgttgtattttattcaacTTAACACAAACCTAGTATCtgataaaaagctaatatttaaaaacacatttttatattttatttatcccATGCTGCCAGTTATCAgatttcatataaattatatatttttttctacataacccattattcaaaaaaaaatatttaaaaacatattcatttttatttattgtttttaaatttaatttattccacataaatcttcaaaaaacaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006537 glutamate biosynthetic process biological_process
GO:0006562 proline catabolic process biological_process
GO:0004657 proline dehydrogenase activity molecular_function

KEGG:

id description
K00318 PRODH, fadM, putB; proline dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47971 lncRNA upstream 79953 1785401 ~ 1785642 (+) True G32552
TU47959 lncRNA upstream 98705 1766596 ~ 1766890 (+) True G32542
XR_006251105.1 lncRNA upstream 100188 1762921 ~ 1765407 (+) True LOC122346170
TU47957 lncRNA upstream 103313 1762005 ~ 1762282 (+) True G32540
TU47956 lncRNA upstream 103624 1761564 ~ 1761971 (+) True G32539
TU48082 lncRNA downstream 25410 1901458 ~ 1905499 (+) True LOC122346050
TU48091 lncRNA downstream 82070 1958118 ~ 1958584 (+) True G32643
TU48092 lncRNA downstream 90131 1966179 ~ 1966378 (+) True G32644
TU48094 lncRNA downstream 115501 1991549 ~ 1993168 (+) True G32646
TU48090 lncRNA downstream 119972 1996020 ~ 1997056 (+) True G32642
XM_043240698.1 mRNA upstream 889 1851607 ~ 1864706 (+) True LOC122346045
XM_043240563.1 mRNA upstream 45038 1806950 ~ 1820557 (+) True sec14l8
XM_043240564.1 mRNA upstream 45038 1807397 ~ 1820557 (+) False sec14l8
XM_043240534.1 mRNA upstream 59554 1796834 ~ 1806041 (+) True tctn2
XM_043240535.1 mRNA upstream 69157 1794534 ~ 1796438 (+) True ccl19a.1
XM_043239187.1 mRNA downstream 2037 1878085 ~ 1880008 (+) True LOC122345240
XM_043239188.1 mRNA downstream 5967 1882015 ~ 1892104 (+) True LOC122345241
XM_043240712.1 mRNA downstream 23547 1899595 ~ 1900425 (+) False LOC122346055
XM_043240710.1 mRNA downstream 23553 1899601 ~ 1900425 (+) True LOC122346055
XM_043240703.1 mRNA downstream 24579 1900627 ~ 1905282 (+) False LOC122346050
TU48056 other upstream 22582 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 39481 1822654 ~ 1826114 (+) True G32611
TU47965 other upstream 72352 1791860 ~ 1793243 (+) False ccl19a.2
TU47619 other upstream 750190 1112496 ~ 1115405 (+) False selenoe
TU47584 other upstream 808442 1055193 ~ 1057153 (+) True G32277
TU48080 other downstream 25410 1901458 ~ 1905288 (+) False LOC122346050
TU48087 other downstream 134363 2010411 ~ 2018459 (+) False LOC122345711
TU48185 other downstream 389097 2265145 ~ 2268194 (+) True G32706
TU48610 other downstream 1729138 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 1729138 3605186 ~ 4144396 (+) True G33015

Expression Profile