RNA id: XM_043240708.1


Basic Information

Item Value
RNA id XM_043240708.1
length 3003
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC122346053
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1906927 ~ 1917452 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTTCTGGTTCCAACATGGACATAGAGGGCGCGACCCAGCACCTTCGGGACATCTTGAAACTGGATCGTCCCGGTAATTCGGCCGAGCCTTTGGTAGAGAGCCAGAGAAAACCTTCTTTTAATGGAGAGTTGAATGGCGTTCTTGGAGCGGATCTTATTGGAGCAGGAGGACTTGCAACAATGGTGGAGCCAGCTGCTCACAACTCAGACAAACTTAACGGACAGGACACACAGACTATCTGCCTTTCAGGAGATGATGGGTCCACTTGTGTCCCCATCAGAGCAAACAATGTTGAAATCGTGTCCAGTCGTGACTCTAGTATTGACAGTAAGGCTCGTGGCAGCAACAagGTTAAAATTCAGCCCGTGGCCAAATATGACTGGGAGCACAAGTACTACTATGGCAATTTAATAGCTGTGTCCAACTCGTACTTGGCTTATGCCATCCGAGGTGCAAACAATCATTCTATGATCCGAGTGCTGCGGCTGGGATCAACTGAGCGTTCGCTGCTGAAGGGCTTCACCGGTGCCGTCACAGACCTTGCTTTCGCCCACTTGGACTCCACCCTTTTGGGTTGCGTGGATGAGGCTGGAAATATGTTCATTTGGCAACTCACTAGCCACAGCAGCAAAATACAAGATGAAGTGATCGTTCACATCCGAAGGCCAGAGGACACTCCACTAAATTCCAACCGCAGACTCATCTGGTGTCCCTTCATCCCGGAGGACAATGATGAGAGTCCAGAGGATGCGTGTCAGACACTGGCACTCCTTCATGAAGACAGAGCTGAGGTTTGGGACCTAGACATCCTCCGATCCAATAACAGCTCATGGCCTGTGGATGCCACAGAACTGAAAGAGGGCTTCATCACCATTAGAGGACACACAGCACGCATTAGTGAGGGAGCTCTGTCCCCTGACGGCACGGTCTTGGCCACAGCCAGTCATGATGGATTTGTAAAGTTCTGGCAAATTTACATTGAAGGACAGGACCAACCCAGATGCCTGCATGAATGGCAGCCACATAATGGTCGGCCTCTTTCCTGTCTGCTCTTTTGTGACAACCACAAGAAGCAAGACCCAGAgTTTTCCCCAGATCCATTTAACAGCAGTGTTCTACCCAGCCTGAAGGCTAGTTTGGACCTTTCTGCAGAATTTCTCATCCTCAGTGATGTTCAGAGGAAGGTGTTGTACGTCATGGAGCTGTTACAGGATCAGGAAAAAGGCCGCGCTAGCTTCACTGCAGTTTCAGAGTTTCTGCTTACGCACCCTGTGCTAAGCTTCGGCGTGCAGGATGTTGCTCGCGCCAGACTGCGCCACACAGAGGTCCTTCCCCCTGATGAAGAAAGTGAAAGCATGACGACAGAAGGAAACCAGGGACCCTCTGAGTCCAAATCAGGAATCCAGATTAAACTCTACTGTGTTCATACAAaATCACTACAGGATGTGCAGATCTGGTTCCAGCCCAATCAGGGAGCCTCATCCTCCCTCTTTATGCCACAGTCTGGATCACCTGGATCACAGGATGGCTTtgGTTTTTCTGACCCACTTGCTGATCTGAATGTGGAGGCAATGAGCTCTGATAAAGAGTCTGGAGATAGTGGATCACAGAATGACCTGAGTAAGATTCTGGCTCTTCCAACTCCAGCTGACTTCATGAGTCCAGCCCCATCAGCCTTGCCCAAACTCATGACCCCAGATGCCTTCATGACGCCCAGCACCTCCGTTTTCATGAGTGTTTTGAGACTTTTGGATCCTACTGAaggTGGAGATGATCTGGCCCAGAGCCCTAAAATGTCTGTTGAATGTGGAAACAGCAGCTTGACTCTGAATGCCAGCTCAAGCAGTCCGAGATCCAACTCTATTCTCATCTCAGGCCTTGGGGAAAATATCCAGGCTTTCTCTCCCCCACTGGTGCTCTCTCCATCCCTCCTGCGAGAGGCCTCTCTGCTCTGTGAAGCTGCTCCTTATTCTCACAGACTTCCCCTTCCTTATTTCCCATCTCCACCTCCACAGGTTTCCCCTCCAAACCCTCCTCTCTCCCTGGATCTCCAGGCCATAGACCCTATGGTTGTCCCCCAGGCCTCACCGACGAGAGCTCGCTCTCCAGATGTCATCTCCTCTGCTTCTACGGCAATGTCCCAGGACATCCCCGAGATCGCCTCTGAGACCCTGCAGAGGGGGCTGGCCAGCGCCGCTGCTGACTCAGGCCCTGTCCTACATTCTGACAGCATGGCATCAGCCGCATCAGTCCTCCACCTGTTGTCTCCGAGAGCCCGGAGCAGTGCTGAGCACAGTTTGCTGCCTCTGGAATTGGGTGCAGCATCTGTGGATGGAGAACAGAGACTTAATACCACACCCTCCTTGCTGGAGACGGCTCTGTCGCAGGAGAACGCAGTAGCAGCCGGAGGATCCTGTTCCGACAGCAGCGTGAACCACACCTGGCCCGCAGCGCCTGATATCACACGAGAAACTCGCAACAGCCTGAGAGACAATGGTTTGGGAGActgCTCTAGGGAGGAAATAAAGGACAGACACATTTCTTCTCCATACCACAGGCGCACATATCACCTGACTCAGAATGACAGTCAGGATGCAAGTGCAGAGCAGAGCGATCATGATGATGAGGTCGCTAGTCTGGCCTCCTCCTCAGGAAATTGTGGCCCTCGCTCTTCTCACAGACTTCCTGTGAAAGACTGGAAAACATCTCCCCGCAGCTCCCCTAAGCTCAAGAGGAAGAGCAAGAAGGATGAAGGAGAGTGCTCGCAGTCTAGACAGATTGAAAACCAGATGAGCACAGAGGTGCAGGACGAGCTCCTACAGATGTTAAGGAGTCAGCAAAGGGAGATCGCTGAGCTGAGACAGAACCAGCTGGATCTTCTGCAGAGAGTCACCAGCCACATGGACGCTGTTCAGAGCTCCATCATGGCTCACATTGAGCACGCCATGTTGGCTCAGCAGGAGCAAGAACGTATCCTGCCACTAGAGGGAGATTTGTAG

Function

GO:

id name namespace
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48082 lncRNA upstream 1428 1901458 ~ 1905499 (+) True LOC122346050
TU47971 lncRNA upstream 121285 1785401 ~ 1785642 (+) True G32552
TU47959 lncRNA upstream 140037 1766596 ~ 1766890 (+) True G32542
XR_006251105.1 lncRNA upstream 141520 1762921 ~ 1765407 (+) True LOC122346170
TU47957 lncRNA upstream 144645 1762005 ~ 1762282 (+) True G32540
TU48091 lncRNA downstream 40666 1958118 ~ 1958584 (+) True G32643
TU48092 lncRNA downstream 48727 1966179 ~ 1966378 (+) True G32644
TU48094 lncRNA downstream 74097 1991549 ~ 1993168 (+) True G32646
TU48090 lncRNA downstream 78568 1996020 ~ 1997056 (+) True G32642
TU48097 lncRNA downstream 80727 1998179 ~ 1998593 (+) False G32649
XM_043240703.1 mRNA upstream 1645 1900627 ~ 1905282 (+) False LOC122346050
XM_043240712.1 mRNA upstream 6502 1899595 ~ 1900425 (+) False LOC122346055
XM_043240710.1 mRNA upstream 6502 1899601 ~ 1900425 (+) True LOC122346055
XM_043239188.1 mRNA upstream 14823 1882015 ~ 1892104 (+) True LOC122345241
XM_043239187.1 mRNA upstream 26919 1878085 ~ 1880008 (+) True LOC122345240
XM_043240123.1 mRNA downstream 92765 2010217 ~ 2019150 (+) True LOC122345711
XM_043240752.1 mRNA downstream 261131 2178583 ~ 2207545 (+) True LOC122346081
XM_043240758.1 mRNA downstream 332206 2249658 ~ 2264585 (+) True LOC122346086
XM_043239536.1 mRNA downstream 352761 2270213 ~ 2277034 (+) True LOC122345419
XM_043239538.1 mRNA downstream 352761 2270213 ~ 2277034 (+) False LOC122345419
TU48080 other upstream 1639 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 63914 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 80813 1822654 ~ 1826114 (+) True G32611
TU47965 other upstream 113684 1791860 ~ 1793243 (+) False ccl19a.2
TU47619 other upstream 791522 1112496 ~ 1115405 (+) False selenoe
TU48087 other downstream 92959 2010411 ~ 2018459 (+) False LOC122345711
TU48185 other downstream 347693 2265145 ~ 2268194 (+) True G32706
TU48610 other downstream 1687734 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 1687734 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 2705055 4622507 ~ 4623060 (+) True G33174

Expression Profile