RNA id: XM_043240719.1


Basic Information

Item Value
RNA id XM_043240719.1
length 4481
RNA type mRNA
GC content 0.48
exon number 18
gene id map7d2a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11046479 ~ 11064446 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGTTTGGATGACGTCACCCCGCGCGCGCTTCAGCACCACCGCGCTGTCCAGCCTCTCGCGACTCTGCTGTTTCACCGGACAGAGCAACTTTCCTCTCAATCGATCCTCCACCGCAAACCGAACGACCTGCCACGGCGCCACAGAGCGCGTTCTGCTGAGAGCGTAGAAAAGCGGGTCGGGTCCCGGTGGCGCAGCGGCGGTCCAGGAGGGAGCTGGCTATGCTGTTTCTCTTggcttgattattttttttttggggaggGGGGGTAGCTTTTTGCTGCGGCGCCGTCCGTGACATTGCGGTTGGAAGAGCCGCCGGTGGACCGCGAAGATGGCGGAGAGCGCTGTCAGTACGACGACAGtCACTAAAGTAATGACATCACCTTTAACTCCGGAAAAAAGACCACAAAGCAATGGACATGCATCACCAACTTACCAGAAAACCAACCAAGGCAGCCCTTCTATAAAACACACTGATGCTCTGACGCCGCCCACTGTCACCGAAAAGAAAACTCAAACCAATGGGCACGCTTCACCTTCACGCCACCCACCCAATACCAACGCACATGCAGGTAAACAATATATGGAGGGCTATTTGAAGACAGATGATAGAATGAGACTCGCCAAGGAGAGACGTGAGGAGAGGGAGAGGAGTTTGGCTGCCCGGGAGCAAGCCATAAAGGAGAAGGAAAGGCGGGCACAGCTACAGTATGAGAAGACGGTGGAAGAGCGATGGAAGCGGCTGGAGGAGCAGAGACAGAAGGAGGAGCTTCGCCGAGCAGCCGTGGAGGAGAAGAGAAGACAGCAGCTGGAAGAGGAGAAGGAGCGTCTGGAAGCTTTAATGAGGAGATCACTAGAGCGCAGCTTGCAGCTGGAGAACAGGAATAAACGCTGGGCTTGGGGTCCCAACGGCACCGCTCAAGGTGACTGGGAGAATGCCCCGCCTCCTCTCTCTGCTGCCTCCGCCCTTCCCCATGACCTCGCTGCCCCCTCTCCTGCTGCCATCGAATCAGGCAACGTGCCCTCCAGTCCTCACAGGTCACCATACAGAGGATCACCGAGTCGAAGAAGAAACAACCCTATGCCAACGGAAGAGTCCAGTGGAGCTCTCAGTGCCCCCAACACACCCAAGAAAGAGAGATTGCGTAGAGAGAGAAGGACTGGCTCTCCGGCTACAGGTTCTCCAGTTAGACGAGCTAAATCTCCTGATGTTACCCGGCGCTCTGCCTCACCTGCAACACCCAAGTTATTGCCTAAGAGTCGTACCCAGTCACCCTGTACAGTGCGCCAGTATCCACCCTCCCCTATGAAACACCGACCGGCCACACCGGTCAGTGACAGCAGCAGGAAGACAGAAGACAAGCAAGCCGAGGACATCAAAGGTTTGGATCCCAAGGAGGGCAGGTCTCTCAAGTCTGAGATCCACCAGAACAAGAGCCCCAACAATGAAAGCCTAGATAAAAACCCAAAAATGGAGACAAGTGCTTTCAGCACACCACCTCCAGAAAGAAGAGCAATAAAGATCGAAAATCACATTAATGGgtcaaaggagaaaaaaagtgtagtttTAGAAAACCAACAGAAGAAGACTGACAAGATGGAGACCCCTGAGAAAAAACATCCCAAATCAAACTGTAATGATATGACTGCAGATCCTTCACCCCTGAACTCTCCTGGCAAGGTAGTTGCTGGAATGACAGATGCTGAGGAGGCGTCTCGTCTGCTTGCAGAACGCAGACGTCTGGCCAGAATACTGAAGGAACAAGAGGAGAAACAACGCAGGGAATTGGAGGAGCAGGAAAAACTAAAGAGTGAGCAGCTTAAGAAGAGGCAGCTGGAGGAAAGAGCTCGACAAGAAGAGAAAGCTCGTCAAGCTGAGGAGGAGAAATGCAGACAAGAGCAGGAACGGAAGAAGAGAGAGCAGGACGAGAAAAAACAGAAGGAGAAGGAGCTTCAGGCTCAGATGGAGAAAGAGAAGGAGGAGGCAGAGATTCGTGCTCAAAAGGATGCTGAGCGTCAGCGGCAGGAGAGAGAGCTTTTCAAACAGCAGGAGGAACAGGAAAGACAACAACGAAAAAAGAGAATTGAAGAAATCATGAAGAGAACCAGGAAGAGTGATGGCGAGATGAAGAGAGAGGACAGCCCAGAGCCCTTATCTCCGGTCTCCTACCCCGTCTCTCCTCCAGGCAGTAACCATTTGATCTCAAATGCTGAAGTCAAATCTCAGGCCAACTCCATTCAGCCAACCTCTGTGCACGGCCAGAGCGACAAACCAGGTAAACGACCAGAGAACACGTGTGCGAATGAGCAGATGAAGTCACCTGCTCACGTGCCCTCAAAAAATCCCTCCTTGAACGGTCACATTAACATGAACTCTGCTGCGGTTAAAacacaagagaaagaaaagttAAGCGAAGAGAAGGCCAAGACAATTAGGCAAGAGAGAGAACACGCGAAGACCCAAGTGAAGGAGGAAATAAAGCGAGAAGACGCATCAGCTGCAAAGGTGCAGGGAACTCCACTGAAGAGCTCTCCTGAAAACACTGTAGCAAATATTAAGAGTATTGTGACGACAGACAATAAATCCCAAGGTTCCACTCAAACGAAAGCACCTGCAAATATGCCCACTCACTACCTGACCAATGGAAAAAGCCAAACTATCACTCAGGTGGCCAGTAACCAAATGAAAACACTTGATTCTGTACAAATGAATGGACAGGCCACAGCTCGGGGACCTACGAAGGAAATCACTGTGAAGAAATCAGATATCCCTCATGCCAATGTACAGGGGAGCTCAAACGTAACTGTCCCTCAGGCTGGTAGACACATGATAACACAGGTGAAACCAAAGGAGGGAGGAAACGACAACCTGCCCTCTTCCTTGACCCCGTTGCCAGAGTCAAAACCCCCTCTGCCTCTTATTCGTCTGGACACTTTGGAGGGGAAGAGCGGAGCGGCAGATGAAGTGCAGTACATGGAGGTTAGCCCCGTTTCGAAGGAAGAGCTCATTTCCATCCCAGAATTCTCGCCAGTGAACTCTCCCCAGCAGAATGGAATGAATAACATGCGTGCTCTAGAGGACCTGTTGGATCTGACCGGACAAGTAGCTTATCCCAGACTCTCTCCGGCTGCCAGCCTGGGCGACTGCAACAAGAATCTAATAGAAGGTGTCTGTAGCCCTGGATCTGACTCGAAACTCATTCCCACCAACCCTCCGGCCTCTGACAAACGCCACGTACAATAATGGTAATGAGACAGACTACATTGGTGCAGCTGACTGCAATGGGATAACTGCTcatctcttttaaaagaaaagaaaatactcCTGGGCAAATTCGTGCAAAATTCGTCTGTTTAGTTTCAGTGTTGCcctcattaaaaatgatgtCCTTCTGCCTTTAATCTTTACAGCACAAAAACCGAGTATATTGAAGCTGTGGTTCAGTATTATGGACAGAATTTAATTCAAGTGTGTAGTGTTCACCAAAtgtggtgtgtgttgtgtgtatgtttatatacgTACAAATGTGGATAGCCAAAATTGCTGGTAAGAGGGTTTGGACATAATACTTTAAAGGTATCTTTCGCCAGAGTTCAACATTTTCCAATGACATCGTCATCACTGGATAGAGACAGAACACTGATTGGTTACTGTTATATTTTAGGAAGCATAACTGTATGAAGTAATaaatagtgtgaaatattaactCTTTGTAGTTAGAAATACGCGATAAGAGGTTTCTTTGCCAGTCAACTCTTTCATTGGTAACAGTATTAttatgaactgttttgttgagaAATTGCTATGTATTTTAAGCTCAACTAACATCTCCTGCATTGCATCACACTGTATTAAACCCCCAGTTTGCTATGAAATGCTTGTACCGCAGGACATTAGCATATTAGAGAAATATGACCATCAGTGAATACAgcatgtatattattaaaagaattTATGGCGGTAATCCCATTTTAAAGCCCTAGTCTACCAGTAATTAGTGTCATATTCTTCATCCGGTGTCATCACTGTGCTTAACAATGTAGTTTCAGTCTCAGACGTTCTTTTGACGAATGTTAACCAGTTACATTGGAGTCCTGACTTTATTCCTTGACATTGAAGAAGGAAAGTGTTGTGgtccaaaccaaaaaaaaatccattggtGTGCTTTTACTTGCCCAAACACTTCACTAGTCTGTGGGTGTTGCAGGTATACATGTTTTTGGAGTGGGTGGGTATGAGAGTTGACTGCTTTGTTGTTTAATTGTTGTATATAGTGTGGATGCACAAAAAAGCTTActtgaaaaactgtttaattagCCTGCAGGGAACTTCTAAACTTCTCCAAGTGTCTCAGCTTCAATCTCTGAATACAGTACAGCAGTGACTTCAAGTTGTGATTACTGTAGATGATGTGCATGGTGGCATGAGCATCAAGCCATAATTATATGCCTagaaataaaccaataaactGTCTTTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51871 lncRNA upstream 27288 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 208113 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 230179 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 498855 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 712672 10333219 ~ 10333808 (+) True G35043
TU51912 lncRNA downstream 72606 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 72606 11137052 ~ 11147242 (+) True LOC122346180
TU51930 lncRNA downstream 122808 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 140054 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 141870 11206316 ~ 11208454 (+) True G35274
XM_043238299.1 mRNA upstream 1909 11041140 ~ 11044571 (+) True eif1axa
XM_043238296.1 mRNA upstream 5358 11029087 ~ 11041122 (+) True rps6ka3a
XM_043238295.1 mRNA upstream 5358 11029087 ~ 11041122 (+) False rps6ka3a
XM_043238298.1 mRNA upstream 18475 11020321 ~ 11028005 (+) False pdha1a
XM_043240113.1 mRNA downstream 9444 11073890 ~ 11097315 (+) True LOC122345703
XM_043240115.1 mRNA downstream 9502 11073948 ~ 11090156 (+) False LOC122345703
XM_043240112.1 mRNA downstream 9503 11073949 ~ 11097315 (+) False LOC122345703
XM_043240114.1 mRNA downstream 9516 11073962 ~ 11097315 (+) False LOC122345703
XM_043240116.1 mRNA downstream 25821 11090267 ~ 11099337 (+) False LOC122345703
XR_006251113.1 other upstream 113317 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 315428 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 928354 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1247122 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 2174962 8867513 ~ 8871518 (+) False man1b1b
XR_006251021.1 other downstream 859782 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1184692 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1184692 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1449630 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1638925 12703371 ~ 12705241 (+) False iscu

Expression Profile