RNA id: XM_043240728.1


Basic Information

Item Value
RNA id XM_043240728.1
length 3475
RNA type mRNA
GC content 0.45
exon number 7
gene id tmem248
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22215339 ~ 22227188 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACAGAAGACATCTACAGTCGGTTTCCGTCAGCCAGCGGCTCGCTATAGACTCGAAGGCCAAGTAAAACCGCGTTTTGAGAATATAGCGCACGGGCGAATAATGGGAAGGGGCGTTGTGCGCTCTTATACCGCTGTCAGCTGTGTGTTTGTCGCTCAGGCCCGTTAGGCTCCAGTCAGTTAGCTTTAGCCGCCTGCAGCTGTCGTGCGCGCGCACTCGCGGGGGCAAAATGGTGTTATTGTTGAATCCACTGGAGAATCTAAAGACCTACATAAGTAACCGTCCACCGCTGGTCATTTTTATGGTCAGCGTCAGCGCTGTGGCCATCGCTTTCCTCACTATAGGATACTTCTTTAAGATTAAGGAAATCAAATCTCCTGAAATGACTGAGGATTGGAACACGTTCCTCCTTCGATTCAATGAGCTTGACTTTTGCATCTCAGAAAACGAGACCCTCAAACACAGCTTGAACGAGTCCATCACTCCAGAGAGCACAGTGACCAGCAGTCAAACGCGATCCAGCACCCAGTCCCCTCCCCTGTTAGAGGACCCCGGGCCGATCAACATCTCTGTGCCCATCACATTGACCCTGGATCCGCTGAGGCCGTTTGGGGGCTACTCGCGCAATATTACTCACCTCTATGCCAGTGTGCTTGGGCAGCAAGTTGGCCTTGCTGGCAGAGAGGCCCATGAAGAGATGAACATCACATTCACTCTGCCGGTAGCCTGGAACTCAGATGAGTGCGTTCTGCATGGTCGTTGTGAGCAAATGGTCTTCAGCACCTGTATGACCATCACAGCAGCTAGTAATGTCTTCCCAGTCACAGTGCAGCCGCCTCACTGTGTCCCAGAGACCTACAGCAATGCCACATCCTGGTACAAGATTTTCACCACAGCACGAGACTCAGACACTAAGTACACACAGGAGTACAACCCGTTCTGGTGTTACAAAGGTGCCATTGGGAAGGTGTATCACACACTCAATCCCAAGCTCACTGTCATCGTTCCAGATGACGATCGCTCTCTCATTAACCTGCACCTCATGCACACCagctacttcctgtttgtgaTGGTCATCACAATGTTCTGCTATGCAGTCATCAAGGGCAGGCCTGGCAAAGTTCGACAGAACAACCCAGATTTCTGTCCAGAAAAGGTGGCCTTGTCTGCGGGATAAATGGGGGTGAAGGTGAACATCTGAACCGAAGCATATCGGAAAGGGAAGTGAGAAAACTACATGTTGCCTACTGAACCCAAGagaagggtgcaaaaaaaaaaaaaaagctctgtgAATGCATTACTCTGCAATGTTGGGTCATTCCAACCAAAGACTTTTAAGTGCCTGTATCTACTGTGTAAATAATGATAGGACTCTTAAATTCAGTACAGAAGCAGTCTGCCTGAGCTTCCCCCTGCACCCTGTGCCATCCTGTAAATGTTCAGTATATCCAGTATCAACAGAGGACAGTGTTTGGCTAGAAATGCTCAGATGGAAAATATCACCTCTACTAAATCTGATCCTTTTTCACGCTCGCTCTTTGTGTTCTTGATCGGATCACTTCCTGTGTCATTCTATTTCTCTGGAGGTGACCTTTTGCCTTCTCATTCCTCTCGTGTCTTTGTCTTAACCGACCCTTTCGTATGTGTCCATTGCGGATTCTGCAGTGGCATTTCTTTTGATTCCTCCTTTGAGGACGGGCAGATGCGTGGATCTCTGCCATGTACCATGATCAACCTGCTGGTCATGATCTTTGGACGAGTTCCACTAGAAGTGACAGCAGGCTTCCGTACGACACGCTTCTTTTATCATCGAACCCACGCCGGTTTTATTGCGAACGTGTCTAAGTGAGAAGCCCGAGTGGAGGTTGGACACGGCGtttgaataaattacttttaaaagcaaataaaaccacCAGACATCTTACTCGGAATGTCACCGTGTCGGCGAGTCGAGATAAAAGGCCTGTTCTCGGATCGATGGATTTGTGTGTTGAAATCTTAATGAACGCAATGATTAATGGCTTTGGGCTTCACGTCTCCGTTTCTAGACACttcaaatgaatgtatttgtaaaatcagcaaattaacAGCAGTGATGCAGCATCGATCTCTTGTACATGTAACattgtagttaaaaaaaaaaatgtaaatcattatTGTAGATATTTTTTGTAATCGCATTACTttccagttttgtttttttacaaaaccatTTCTACCTTCATCCATTGTGTTTCTtgcctttttttgtgtttcatgctTCATTTGATACTTAAGCAACGCCGGTTTCGTTTTAATCTTAGTGCAATATCTGATCTGTCTTTTGGCCTTCCAAACCTTTAGTTATTCTTATTGTCATTAGGTTTTCATTTCCACAGAGTGAAATGCATATCGTGCGTCATATCGCGTGACACGTATTACGAGAGAGCGCTTTCCTCCTCCATTCTGTCTAGTTCAAGCTTTTAAGCATCTTTGTCCTCTCCACCTACAAAGTCCACTGCTCTTTAGCGACAAACCCattttcccatcatgccttgcTTAATTACGGCCCTCTTAAGCTGCATCAGTCACGGTTCATCAGCACTCCCCTTCTCTCGCCCTATATTAAAGCCCATAATAAACACGCATCCAACCACTAATGTGCCTTTGCACGGTCTCACCCATATTCGCCACACTTTGATCCGTTCAACCTGCTGAATTCATTTTGAGTGTGTACTGCTCACAGTGACTTCCTCCCCATTTCATATCCAATTCGGAGTCAAAACCGCAGTAACAGTTGGGAAAGATAGAAAttcatttgtgctttttctgtttatGCATAAGAGCAAACGCTTGTTTGTTTTACTCGCCAAACCCATCCTACGGTAACTAGATTTTCGAGTGTTAATTATGCTTTGAAACCTCTTTGAATAGCAATATCTTGCATTTGGGACGTTAATTTGTACGCTCTACTGAAgcgtttgtgctttttttttttttttttgagacctTTGCTCACGTCTAGTTTCTTTTTGGGATCGTGAGATGACTTTAAACCGTTCTGATGGCTGTAGGAGCCGTTCTGATAGCAAAAGTATTCTGCTtcataatgcataatttctGCGTTCATTAAAGTTGGCCTTTCAGTGCTCCTGGAGGACAATGGAAAATGACAACGAATTCCATGGATGCTGCCTGATGCTCAGATCATATTGATCTTCCCCCCCCTTGTCCTTCCTTTGGGCTTGTAGCATTTGAGTGAAGTGTATTTGTAAGTGGTAGAAGGTCCTTTCCTTGTCCGAACTTGCGGCGCGAACTCTCGCCGGTTTCCTCGTGTCGGCGAGAGTTGTCGCAAGCCCTTCGACTCGTCATGATGCATGATTGTAAATGTTCTACCTGCTGACCTGTTTGTATGAGGACAATCcctctgtttttgttctgtttgtaaAATATCGTAGGCACAtgctttgctgaataaaatctaaGAAAAATGTC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250931.1 lncRNA downstream 174072 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA downstream 174076 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA downstream 174120 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA downstream 174120 22038380 ~ 22041219 (-) False LOC122344815
TU57036 lncRNA downstream 205232 22008886 ~ 22010107 (-) True G38543
TU57176 lncRNA upstream 564502 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA upstream 564522 22791710 ~ 22793053 (-) False G38634
TU57216 lncRNA upstream 646783 22873971 ~ 22876437 (-) True G38658
TU57350 lncRNA upstream 809269 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 900031 23127219 ~ 23131999 (-) False nrgna
XM_043240133.1 mRNA downstream 3804 22137839 ~ 22211535 (-) True LOC122345718
XM_043240132.1 mRNA downstream 99314 22045299 ~ 22116025 (-) False doc2b
XM_043240131.1 mRNA downstream 99316 22045299 ~ 22116023 (-) True doc2b
XM_043238390.1 mRNA downstream 179025 22020667 ~ 22036314 (-) True castor2
XM_043240544.1 mRNA downstream 213724 21999494 ~ 22001615 (-) True polr2j
XM_043240726.1 mRNA upstream 3692 22230880 ~ 22240821 (-) False lig3
XM_043240725.1 mRNA upstream 3692 22230880 ~ 22240803 (-) True lig3
XM_043240650.1 mRNA upstream 80000 22307188 ~ 22555178 (-) True tmem132e
XM_043240649.1 mRNA upstream 80000 22307188 ~ 22378718 (-) False tmem132e
XM_043239482.1 mRNA upstream 493540 22720728 ~ 22736661 (-) True dtx2
XR_006251119.1 other downstream 175305 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 255455 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 331317 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 331317 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 389234 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 1375056 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1524692 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1660115 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1970517 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 2360840 24588028 ~ 24594116 (-) False anapc2

Expression Profile