RNA id: XM_043240729.1


Basic Information

Item Value
RNA id XM_043240729.1
length 7278
RNA type mRNA
GC content 0.45
exon number 15
gene id ssh1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12762580 ~ 12794103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatttggtaaaaaaaaatagtagtagtagtatgtaaTTTTTACATACAAATACGCAAGACGAATAATTCATACATTGAAGGATTTATTTGGTAATTAACGaaactataaatacaaatgtacacAACACCTTATTGACATCTAAAATGACCGGAAACCACCCTGATGTTCTGCTTGAGTGGATTTTATTGTGGTGGGTATTattttgattcagttcagttgaTTCTGTAGCTCATGTGTTTTGAAACTCagttcagagagagaaaaagattcGTTCAGATGGGTGCCAGTAGGTGGTGACAAGTGTCTTTATGTGCGACGTTGAATCATTGACGGTATTAAATCACCCACTCAACCGATTCGTTATTCGACTGAATTCGTTCACAGCCGCAACAGCACagtctccaaatctgtttttccCCAGTTGGAGATCTTGATCACATACAATGATTTtatcaaaatgcacttttattaagatataaaaaacaacaataggAACAGCAGCCTAACTAAACCGAGCTTCTCTTTACCACATACAAGAGTTACTAGACTCTCATTCAAATGCCCAGCGAAATGACTCCACTGACTCGTTCAGTAAAGGGCGTGTTTGTTGGATAAGTTCAACCAATCATAAGCGCCTACACCGGTCGTACTCGAATGCTATTAGTCCGTACTACTGTCAGTCTTTAAAAGACAGGAAAAACGGTCAACGCGCTTTCAAATGGAGGGACTCGTTAACAGAAAATCATGGAAGTGAATCGTTCACTTACACGATTCATTCAATAACACCGATTCGTTCACAACAGAGACGGCACTATAGGCTGCGTGCGCTGAAGACAGTCACATGCGgcagtgagtgagagtgagagagtaaGAAGCACCAAAACATCATCCAGCTCATGTCAAAACGGAATCAGCGACACAAAAACGCCGAACAGCGGCTCAACCATGGCCTTTTAACGGCGGTCCCAACGAGCGCGTGGAGTCGCAGCGCAATCCCCGTATATCTGGCGCTGCTGCTTGGGGAAAATCCGCTAGTCGGTTTAGCTTGTGACAGATAGACTGGCCGTTGTGCTGGGAGATTTCCATCCATGGCATTGGTAACCCTGCAGCGGTCGCCCACTCCCAGCGCGGCGTCCACTTCCAGCACCGCCACCACCAACGCGGGGGAGgacTTTGGAAGTGATGATGAGCGCCGGCTAAATCAGAGTCTAAGCGAGAGCTTCTTCATGGTCAAGGGGGCCGCTCTGTTTCTGCAGCAGGGCAGCTGTCCGCAGGGTCAGAGGGGTCATCCTCACCACAAACATGCAGGTGACTTACCTCAGCATCTGCAGGTGATGATCAACATTCTTCGCTCGGAAGATCGCATCAAACTGGCGGTGCGGTTAGAGAGCGTGTGGTCGGACCGTGTGCGGTACATGGTGGTAGTCTACACAAACGGCCGTCAAGACACTGAGGAAAACATCTTACTGGGCATGGACTTCAGCAACAAAGACAGTAAGAACTGCTCTGTTGGGATGGTGCTGCCGCTGTGGAGCGATACCAAGATTCATTTAGATGGCGATGGAGGCTTCAGTGTGACTACCGCCGGGCGCACGCACATCTTCAAGCCGGTGTCAGTCCAGGCCATGTGGTCAGCATTGCAGATTTTACACAAGGCATGTGAGGTGTCACGAAGGTACAATTATTTCCCTGGTGGCATGGCGCTCACATGGATGGGGTACTACGAGAGCTGTATCAGCTCTGAACAGAGCTGCATCAACGAGTGGAACACCATGCAGGATCTGGAAACACTGCGACCAGACTCTCCTGCAGTTTTTGTCGACAAGCCAACAGAGAGGGAAAGAACAGAATGTTTAATCAAAGCCAAACTCAGAAGTATCATGATGTGCCAGGACCTTGAAAATGTCACGTCCAAAGAGATTCGCAATGTGCTGGAACAACAGATGAACTGCAACCTGAAAGAGTACAAAGAGTTCATTGACAATGAGATGCTGCTTATTCTTGGGCAGATGGACAAAGCCACGCTCATCTTTGACCACCTCTATCTGggtTCTGAATGGAATGCTTCAAATCTAGAGGAGCTTCAGGAAACTGGGGTGGGCTACATCTTAAATGTTACGAGGGAAATAGATAACTTTTTCCCAGGAACATTTAGCTACCACAACGTCCGAGTGTATGACGACGAGACCACAGATTTACTGGCCCACTGGAACGATACCTACAACTTCATTGTCAAAGCAAAAAAGAATCAATCCAAGTGCTTGGTTCACTGTAAGATGGGAGTAAGCCGCTCTGCATCAACAGTGATAGCATACGCCATGAAAGAGTACGGCTGGTCTCTGGAGAAAGCATATAACTTCGTCAAACAAAAGCGCAGTATCACCCGTCCCAATGCCAGCTTCATGAGACAGCTGGCAGAGTACGAGGGAATACTTGATGCCAGTAAGCAGCGCCATAACCGACTCTGGCACCCTGATTCAGATTGTGATCACCCTGATTGCCAACAAGCTGCTGCCCCTTGCTGTGTGAACTCAGAGACTGTGCATCATGCCACTCCAGAGCCCACGAACCCCCGAGTCACCGTATGCTGCGAGCCTACTGCCCACTCCTCTCCAATTAGCCTAGATCTGGACCCCAGCCACCCCCAAAACTACCATTATTACTTCCGTCGCCTCTCAGACTCAGCCCTCGACAGTGACCCTTCCACACCGATCCATGCACCCCCTCTGCTGGACGTAGATCGTGTCTACATCGAGGTTGCAGATGTGGAGCAAGATGCGTTACTCGACGATGAAACCTTCGAAGGGCGTGAAGGTCTTCCTTTACAGCACTCAAGTGTCCCAGGGGAGGGCACTGCTGCTCAGACCTGTTCTCGAGGAGCGGAGCCTCTGGAGGAATTACGTCTGCGGCTAGAGTTTAGCACGgtggaagaggaggatgaagaggaggcTCAGAAAGAGCAAGCCGAAATGGAGGCGTTGGCAGAGGAAGCGAAGAGAGGAGATGGGAATGATAGTGAAGACTTGTCACATGAAAAGGGGATTGATCTGGCAAGCCTGAACCATCTGTGCAATGAGAactccaacaacaacaaccacctCAAAACGCAACTAAATCTTACTGAAAGTGCCCATCTAAAGCAGCATCATTCTGGTTCATTGTTCGCTTCTAGGCCCACCCAGAGTGGTCTGTTGGAGGCTAGCAGACGAGGCCTTGCCCCTTTACCCCTCAACAGTGTGCCCAGTATCTCAATACAGACGCCGCCCTGTGCCAACCTGTCCATGACAGCCAAGTGTGGCAAACTTGCCTCAGATCTGTGCCTTGATGCCAATGCAATGCCCTTAGGGCATAAAGATAAGCCAGAAGGTAAACCTCTTGACCAAGAAACTAATAGCTGGACAATGCTGCTTGAAGCCAAAGAGGAAGGAGATTCCGGGCAGAAAGAAACTGATGCACAGGGTTCCTCAGCTCTACTCAGGAACGAAAGAGAAAAGGGTTTGGAGGATGCAGAGGCATCTTGTTCTGTGCAACAGCAAGAGGCTCTGGTACAGCTGCAACGCTCCGGCCTTGTTCGTCGGCGAAAAGAGCGCTTGGAAAAACTTTCAGGTCTCTTTCAGGAGCGTGCACGTGCAAATGAGCAACGGGGAGCCGGTTCAAGCAAAACAGAAGATGCAATGAACAATTCCAGTGATTCAACCGACCCTTTTCACAGGCCCTTCGGAGCACGGGCAGACTTTGCTACCGAAGCAGCGGTGCCACTGACAAATGAGGCCTTGTTGGCGGTCCTCGGTTCAGGCGGTTTGACCCCGGTCTCGTCCCCGCACGGTTCCACGCTCACTCGCAGCTCCAGCAGCGACAGCCTCCGCAGCGTCCGTGGCAAACCGGGCCTTGTGCGCCAGCGTACTCAAGAAATCGAAGCCCGGATGCGACTCGCAGGACTTACTGTACCTTCCCGACTAAAACGCTCTAACTCACTCGCCAAACTGGGCAGCCTGACCTTCTCATCTGAGGACTTATGCTCGGCTTGCTCCTCAGACGCTGGGACCCTCCTCATGCTCTCGTTATCTCCAGAACCAGATCGCTCGCTCAGCCCGGAATGGGCCAGACCCTGgccctcttcctcctccacaAACACGGAGGTCTTCAACCAAGGTCCTGAAGATTCCAAGAGCTGACAGCGGGAGATTTTAGTGCAACAGTACCTTTTGGTTTCAGCTTCACTTGCAGCAATGTTACTGacatatttatagtttttttaaacatttcagccACTTGGGATCATGGGAGTGAACATAAAAGGAAGAGTGTGTTCTACAAAAGAACTGCTTTCagttatgaatataaacataatattcaACAGGTAACCTTCTGGACAGGCTTTTGTTGCATGGAATCCAAATGGATGTATATTgcactgactgactgactgactgactgctgTTCTAAAGCAAAATTAGCACTCGCCATCCCAGAGGCTGTTACTTGAAAGCATCAAAATAGACCATTGTGTAATGTTTCCATCATTCCACCCATTAATCGCACCATAAATCACTTATTTGTGGCCCAGAATGAGTCACAGATTCCTTCGGACACGGTCACACATTTGAAAAGGGTTTTCAAATCATACACCCTGCTGTGTTTTTGCTTCCTGGCTGGACGGACTCTTCGCAGTGATTAGGAAAGTTCTTTGTGTGCCGATGGACTCTCTTATCATTCACAGAGCACTGATGATTCACTCGCAGGTTTCAAACCGATACCTCATACCAGTACAGTACTGTTCATAAGCCAGACAGATCACGAAACGGTGTGGAGGCTCGTTAGGATAGAGCATACTTCCATCTTTCTAATACTTGATGAGGAAAGACAATCACTTCAAACGGATAAAGAAAATCAAGCTGCTGTTCTCCTTCCACTGAAACGTTCATACATGCAGTTTCTGTTCTCACAAATGTGACTGTCCACGTTGCTGTCAAAATAGCAGTAGGGTTTTGGGTCACTATTACTGTTACAGTCTCTAATAGCACATACATGTACTTCAAAGGGAGCTCCTCCATTGTAGTTCCTCTCTGCTCCTTGTTTCCAAATGCGATACAAATCAGTCATTTACCCAGGTATAGAACGACtgttatttttcaaaacttgTTACTTTTGTTCCAGAGGCAGTGGCTTGCTGTTTGCAGTTTGCTGATGTTTCCCATCATGCTATTACTCTACTGTTCTAACTCGTTGTGCAGTTTGTACTTACTGTCAGTTTTCCCGTAACGAAAACAATGAAAGGTATACACAGTAGAGCTGAAGAGGTTTCTAAACTGTTCAACTGTGGAAAAAAGTGTGTCCGTCTGTatgggtgaatctcacaaaagcATGTCCTGCTCACAAAAGAGAACAGAAATTTGAAATCATATTTCAGATgtatgatgctgaaaaaatgtttttttttacaaccattaacttcttttaaaaatgttttacttttttttttgtttttttttcctttcctgtGAGCAATTCTTAACTTCTCTCGGTGATGACTCCCTTTAGATTGTCATAAATGAAgtgcaataaaaatactgtaataaagtttttaaactggcattaaataaaagccattacagtgatttctaaatattttttaatctaaataataaattgataatatataattttgcaatttatagtaaaaataagttctattatttgaattaaaaaaaaaaaaaatagaatcattttaaacatttcaaaacgtattgtattttggattttaaaggttttatgtCCCAGACATGTTCTTAACAGTGAGATTCCCCTTGATGTGTGTCTTTAGTCTGAGCACACTTGCCATAccaatttatttgatcacaaactTTGATAAAAGACATTTGTCCATGTCCATGTGTCAACAGGCCTTTATTTACCAATCAGTTGGCTGATTACAGCTTGAGTTGAAGTACTTGAGGTTTATTATGCAGCATACTTTTCCgatattttttaaaaccgaTTTTGTACATGTATCTATGCTACCACCTCGGGTTTGAGCAACAGAAATGTGAAGTTTGggagtgtgtgcgagtgagagGTGCCTTGCACAGTGGCTACACCGTTACTGTGAACTATTTATGAACAAAACAACTTTcaaagtgcgtgtgtgtgtgtgtgtgtgatttaatgttaaaaacatgagCAGGCTCAAAGTATACACACAGTCTCCACCTCTACACACCCAGCAATACactgtatgtaaatatgtatgttgGTCATATAATCGCATTTCTGGAAGTTCATGGTACTTGCATCTGAAAGTCAACTTGAATCAGTTCCCCTGTCCTGTAGGGAAGGCTCGTCTGAATGATGTTCGGTTGACTTAATGAGTCTCAACACTATTTAAACTTCCTTCTGGGATCTGAATATAAAAACTAAGAGGAGAAATAAGCCACAAAGCTGTTTAGTGTCATGAAGAGTCATGCCCCAAGCCCTCCTCCTCTCACCCaagtttttgccattttgtgtCTGATGCCATATTGAGGTCAAATGTGAGTCCGAGATTACAGATGAAATGTTATTGGTTGCCTGCATTGTCTCCTGTCATAAACATCAAGTGCCTTACCCAGAAGCACTAGAGGCATTGTTCTGTGTTGTTCTCTCATTTGATAATGTTGCCAGTTAAGGGCGGAGGCCAAGGGGTTACAAATGGGCACGTTTTAAAGCTGGCAGACGTTGTCCTGTCACACACTCCTACcttttattgttgtattaaaGGATCATTGATATTTGGCATTGTTTCCTTTTAATTAACGAGGAAGTCGCTGCAAGCTCATCAAAGCTGTCGCCAAGTTTTGGAGATGGGATGTTATTCAAGTATGAAGTGATAACCAAAGTTTTGCATTGAGGATCAATATTAAATGCTACTTTTGTTGAAGATGCTGTAGATTCAAGCCGTCTGCTTGGGAGAAATTGTAactggcttctttttttttccggGATGTTACACTGATCTGTTCCCGTATCATCCACTGACTTTCCTCTAGTTGGTTTTtgagcctctttttttttttttttttttttttttttttttgtcaaatagcAGTGCTGTTAAATTGCGATTCTCACCAAATAGGGAGCGCTCGCTCCTCATCCGGTCACCATTATTATCGCTATTATGCAGTAATTTTGTCCTTTGTACTGCAGATTTGCTGTAGTTTCAATGCATATTGCACTTTGTACATTTTGTTGatgatgtactgtatgtgtttattatggGAATAAACGTTTTCTTTcaa

Function

GO: NA

KEGG:

id description
K05766 SSH; protein phosphatase slingshot

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53008 lncRNA downstream 123203 12637190 ~ 12639377 (-) True G35966
XR_006250996.1 lncRNA downstream 155642 12602216 ~ 12606938 (-) True LOC122345380
TU52974 lncRNA downstream 224778 12532390 ~ 12537802 (-) True G35949
TU52941 lncRNA downstream 247030 12506761 ~ 12515550 (-) False G35928
TU52943 lncRNA downstream 252584 12463906 ~ 12509996 (-) True G35928
XR_006251055.1 lncRNA upstream 85958 12880061 ~ 12884157 (-) True LOC122345905
TU53066 lncRNA upstream 119523 12913626 ~ 12916013 (-) True G36004
TU53068 lncRNA upstream 119523 12913626 ~ 12916814 (-) False G36004
TU53073 lncRNA upstream 130640 12924743 ~ 12926462 (-) True G36009
TU53076 lncRNA upstream 139368 12933471 ~ 12933779 (-) True G36012
XM_043238968.1 mRNA downstream 6430 12716051 ~ 12756150 (-) True coro1ca
XM_043238970.1 mRNA downstream 9626 12716051 ~ 12752954 (-) False coro1ca
XM_043238969.1 mRNA downstream 12147 12716051 ~ 12750433 (-) False coro1ca
XM_043238971.1 mRNA downstream 48049 12712197 ~ 12714531 (-) True selplg
XM_043238972.1 mRNA downstream 50526 12708388 ~ 12712054 (-) True tmem119a
XM_043240732.1 mRNA upstream 14407 12808510 ~ 12819678 (-) False svopa
XM_043240731.1 mRNA upstream 14407 12808510 ~ 12819673 (-) True svopa
XM_043238172.1 mRNA upstream 37563 12831666 ~ 12832738 (-) True isg15
XM_043238396.1 mRNA upstream 41853 12835956 ~ 12840936 (-) True ptcd2
XM_043240130.1 mRNA upstream 50148 12844251 ~ 12863698 (-) True map1b
TU52956 other downstream 256622 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 442895 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 593253 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 946770 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 1109953 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 259741 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 581526 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 784958 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 864974 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 865871 13659974 ~ 13699226 (-) False lrch2

Expression Profile