RNA id: XM_043240731.1


Basic Information

Item Value
RNA id XM_043240731.1
length 2017
RNA type mRNA
GC content 0.51
exon number 16
gene id svopa
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12808510 ~ 12819678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGTCAATGAAATTCATGGGAGGTGTATTGTCTTCATCATCTCCGAGAGGGTATTCGGTGCTTTGCAGGGATCCAGCGCCAGCGAgcgacgcgacgcgacgcgacaGGCGCAGGAATCATGGACGCTCCGCAGCGCGCCGCCCCTCTCTGAGCTCTTCTCTGTCCTCACGCCCGCGGTGCTGAAATCAGCCTCGACCCGACAGCAATGTAACAGCAATGAGACAAAGACACCGGCAGCCCGACGAACAGACCGATAATGGACGATGATTTGTTTCAGTTAAGACAGCTCCCAGTGGTGAAGTTTCGGCATACAGGTGAAAGCACTCGCTCAGAGGATGAGTGCGGCGGCAGGGAAGAGGCTTTGCAGGTGGAGGGAGGACGGATGAATATGGAGTCTGTTTCCCTGGCCGATGGTGCTCCGGTGCCTCGGGAATTTGCCAACCCCACTGACGATACCTTCATGGTTGAGGATGCAGTGGAAGCCATTGGCTTTGGGACATTCCAGTGGAAACTCTCCATCCTGACCGGACTTTCCTGGATGGCCGACGCCATGGAGATGATGATTCTCAGTATATTGGCCCCTCAACTGCACTGTGAGTGGGCACTGCCCAGCTGGGAGGTGGCACTGCTAACTTCGGTAGTATTTATTGGAATGATGATCAGTTCTTCATTATGGGGAAACATATCTGATAAATATGGGAGAAAAACAGGTTTAAAAATGAGTGTATTATGGACCCTGTTTTACGGCCTCCTCAGTGCATTTGCACCTATATACGGATGGATCCTGTTCCTCAGAGCTCTGGTGGGCTTCGGCATTGGAGGGGCTCCACAATCAGTAACATTGTATGCTGAGTTTCTCCCCATGCGGTCCAGAGCCACTTGCATTCTGTTGATAGAGATATTCTGGGCACTGGGTACAGTATTTGAAGTGCTGCTGGCTATTTTGGTGATGCCAACTTTGGGCTGGCGCTGGCTGCTGGCCCTCTCCACCATTCCGCtcttcatttttgcttttctgtgCTTTTGGCTGCCAGAAAGCGCTCGTTATGATGTCCTGACAGGAAACCAGGAGAAGGCTCTAAACACACTCAAACGCATTGCAACAGAGAATAATGTCCCCATGCCGCTGGGAAAACTCATAGTGGCCAGACAGgaGGACCGGGGGAAAATTCAAGACCTTTTTTCTCCACACTTCCGCTGGACCACAGTTCTGCTTTGGTTCATATGGTTCTCTAATGCATTCTCATATTATGGTGTGGTTTTGCTGACCACTGAGCTTTTCCAGGAGGGAGGCGCCTGTGGTAGGACAAAGGGCAGTAAAATGGAGCCAAGTTGCAGTTTGGAGTGCAAATATCTGAATTCAGATGATTACAAAGACCTTCTATGGACCACACTTTCTGAGTTTCCTgGCCTGCTGGTGACCCTGTGGGCGATTGATCGATTAGGGAGAAGGAAGACTATGGCACTGTGTTTCTTTGTCTTCTCCCTCTGCATTGTGCCGCTCTACGGCTGTGTGGGAAGGACGTCTTTGACGGTATTTATATTCATTGCGAGGGCTTTTATCGCCGGAGGTTTCCAGGCTGCATATGTGTACACCCCTGAGGTGTATCCCACGGCCACGAGGGCGCTGGGTTTGGGCACCAGTAGTGGGATGGCTCGGGTTGGAGCTCTCATAACACCATTTGTGGCACAGGTGATGCTGGAATCATCTGTGTACCTGACTCTGTCTGTGTACTGTTGCTGCTGTTTGCTGGCTGCCATCGCTTCCTGTGCCCTGCCCATCGAGACCACAGGACGAGGCCTGCAGGAGTCCAGCCACAGAGAGTGGGGTCAGGAGATGATGGGACGGGCCTCAGACAACAGCCCTGGAGGGATTCCACATTCCAGCTCTGGATCACAGGACTAAGAAACACCCCAGATAGGTTTGAAAAGACTTTGTAGAAGAAATTGGGGttcttttctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcaatgtgtgtgtgtc

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53008 lncRNA downstream 169133 12637190 ~ 12639377 (-) True G35966
XR_006250996.1 lncRNA downstream 201572 12602216 ~ 12606938 (-) True LOC122345380
TU52974 lncRNA downstream 270708 12532390 ~ 12537802 (-) True G35949
TU52941 lncRNA downstream 292960 12506761 ~ 12515550 (-) False G35928
TU52943 lncRNA downstream 298514 12463906 ~ 12509996 (-) True G35928
XR_006251055.1 lncRNA upstream 60388 12880061 ~ 12884157 (-) True LOC122345905
TU53066 lncRNA upstream 93953 12913626 ~ 12916013 (-) True G36004
TU53068 lncRNA upstream 93953 12913626 ~ 12916814 (-) False G36004
TU53073 lncRNA upstream 105070 12924743 ~ 12926462 (-) True G36009
TU53076 lncRNA upstream 113798 12933471 ~ 12933779 (-) True G36012
XM_043240729.1 mRNA downstream 14407 12762580 ~ 12794103 (-) True ssh1a
XM_043240730.1 mRNA downstream 28228 12762580 ~ 12780282 (-) False ssh1a
XM_043238968.1 mRNA downstream 52360 12716051 ~ 12756150 (-) True coro1ca
XM_043238970.1 mRNA downstream 55556 12716051 ~ 12752954 (-) False coro1ca
XM_043238969.1 mRNA downstream 58077 12716051 ~ 12750433 (-) False coro1ca
XM_043238172.1 mRNA upstream 11993 12831666 ~ 12832738 (-) True isg15
XM_043238396.1 mRNA upstream 16283 12835956 ~ 12840936 (-) True ptcd2
XM_043240130.1 mRNA upstream 24578 12844251 ~ 12863698 (-) True map1b
XM_043239055.1 mRNA upstream 74911 12894584 ~ 12911763 (-) False ttc33
XM_043239056.1 mRNA upstream 74911 12894584 ~ 12911744 (-) False ttc33
TU52956 other downstream 302552 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 488825 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 639183 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 992700 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 1155883 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 234171 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 555956 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 759388 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 839404 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 840301 13659974 ~ 13699226 (-) False lrch2

Expression Profile