RNA id: XM_043240738.1


Basic Information

Item Value
RNA id XM_043240738.1
length 2671
RNA type mRNA
GC content 0.44
exon number 13
gene id usp30
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12820605 ~ 12826178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCGTCCTGCTCCGCGGAAGGTCCGTCGCGCAACAATGCGCAATGTTTAGTTCCGCACTTTTGGGCGCAGTGAAATATGCCTTGGTGCAAACAGGGAGCTACAGACAAGCTCGTCCGAGAGTTCTTACGCACGGGAACCGCTGCCAGgaacaaaatgatgaaaaactgGGGTGTGATCGGTGGAATAGCTGCTGCCATGGCTGCTGGAGTCTATGTATTATGGGGGCCAATTTCAGacaggaagaagaagagaaaaggtGGTATGGTTCCTGGTCTGCTTAATCTGGGGAACACATGCTTTATGAACTCACTTCTCCAGGGCCTGGCAGCGTGTCCTTCCTTCATCAGATGGCTTGAAGACTTTACAAGCGAAAGCAGCATACCTCCAGAGAGAACTGAGAGAGACACTCATCTGTCCAGATCTCTGATGCAGTTACTAAAAGCGCTGTCAAGTCATGATCCTGGAGAAGATGAGGTTTTAGATGCGGGAGGCCTTTTAGAAGCTCTCAGACTTTACAGATGGCACATCAGCTCCTTCGAGGAACAAGATGCTCATGAGCTCTTTCATGTTCTCACATCATCCTTAGAGGAGGAACGTGAAAGCCAGCCCAGAGTTGCTCACCTGTTCGACATGCAAACACTGGAGAAATCTGTGGAGACCAAAGAAAAGAACATAAGCTGCAGAACTGGAGgCCCATTACATCCTATTCCAAGTTTATGGAGGACACGGCACCCTTTTCATGGGCGGTTAACAAGTTATATGGCTTGTAAACGCTGTGAGCAGCAGAGTCCTGTGCACTATGATTCTTTCGACAGCTTGTCTCTTTCTATCCCGTCAGTACAGTGGGGCAGACCGGTCACTTTGGACCAGTGTCTCCAGCATTTCATCTCCTCTGAAACCATCAAAGAAGTGGAATGTGAAAACTGTAccaagCAGCAGGCTGGGGAACTTGTAAATGGAGAAGTCCTCGAGAGTCAGAAGACAACTTTCGTCAAGCAGCTGAAACTCGGAAAGttGCCTCAGTGCCTCTGCATCCATTTGCAGAGATTAACGTGGTCTAAGGAGGGTGCTCCCATTAAGAAACAAGAGCATGTTCAGTTTACAGAATATTTGTCTCTGGATCGATACAAACATTGTACAGCGGGTCAGAACCTCCAGAGCACCAGAGGAACAAATAAGCCCATATCTGTCAAAGCTGCCGGGGACCCAAAAGACAAAAGCATTGCTAATGGTGTTgaTTCAGAACACTGTAACAACAATAAGCCACTGTCCAACGGAACCTTTCCCTCCATCTTTCTACACTCACCAGGACTAAGCTCACAGCTCAACCTCACTTACGACTACAGcagctcTGAGTATCTCTTCCGCTTGACGGCCGTCCTGGTTCATCACGGAGACATGCACTCTGGGCACTTTGTCACTTACCGCCGCTGCCCTGCCGCCCCTCGTGGAACGTCTGCTTTCAGCTCCCAGTGGCTTTGGGTGTCTGATGATTCGGTGAGGAAAGCCAGCCTTCAGGAGGCGCTCTCCTCCAGTGCGTATCTGCTATTTTACGAACGAGTGCAAAGGCCCGGTCTGAGGGTGGGAGAGTAGCGTCTCAGCTGACCCGGTTTACTTATTCTTACTTCAAAGCTAGAGCTTCTCTCCATTCCAGGCCATGCTGCGATGGCCGAGTGCAACTGTGCATCCCTGTGCATGCAGTTTGGCGTGCATGTCGTTTCTGATCGCTCTTTGtgacacagagagagggaagatGAGGACTCTGTATATCGTAGTTTCCACCTTAATCTTGCTCAACGTCTAGCGTCGTTATCTGAGCATAAGAATGATGCCAGTCGTGAGTACTACTAGTTGCCACTGATATGGGGTTCACACtcagatttgaatttttttttggggttaAGAAAACTCTACATTTTCACTATAATGGTTTGTTGCAAATTGACCTAGAATTGTTGCCTTGCTCATTAAGCTGATGATCTGTTAGAAGTACATTTCACATGGAAGTACATTTCATCatgcagttttttattattaataatgtgtcTTTGTCCGTTAATGATctattgtgaaaaataatatatttatgcaatttgCATATAAAGGTCTTTTGTAAGACATAAACGCcactaatttgtttttgtttcacgTTTTAAGGGTAATTAAGGGAGATCATGGGATGTATCCTCATCAGGTGTTGCTTGTCTACATGCAGATCCGGGacctgtttcataaaacaaattcaCCAAATAAGCCAGGTTTAGTTCAGTTAGCCTGACTTATTGTTAGTTGTTTTGGtgcaaatatacagtatgttagaCTGACTGAAATAACCCTGGCTTGTttgtaaaacatgttttctgaaaCAGCCCCCAGGTTTCATATGAATCCTATGTTTTCGTTGCATAATGGACAAATCCCATGTCATTTTATCTTTAGTGAATACTTAGAAGAGAAACCTAGCAAGAATATGGAAATGCAACCCATATTCCGAAGTATTTACCAAATAGATTTGTACATCCATTTCCAGTGTTATTCTATAAATTCCTTGTTAACTGTTGATTGTACATGATGCTATTTGcacaattgtatatttttatgatatcaGTGTGTATGATTGTGTGGAGGAACGTTTTTcacatgtaaattaaattaaataaatcctgCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52809 lncRNA upstream 52055 12767948 ~ 12768550 (+) True G35847
TU52802 lncRNA upstream 148399 12567184 ~ 12672206 (+) True G35843
TU52890 lncRNA downstream 56082 12882260 ~ 12882512 (+) True G35903
TU52891 lncRNA downstream 58827 12885005 ~ 12885284 (+) True G35904
TU52892 lncRNA downstream 59153 12885331 ~ 12885934 (+) True G35905
TU53143 lncRNA downstream 282454 13108632 ~ 13108853 (+) True G36062
XR_006251001.1 lncRNA downstream 473577 13299755 ~ 13312652 (+) True LOC122345423
XM_043240742.1 mRNA upstream 13254 12803789 ~ 12807351 (+) False LOC122346073
XM_043240741.1 mRNA upstream 13254 12803954 ~ 12807351 (+) True LOC122346073
XM_043240743.1 mRNA upstream 17735 12798124 ~ 12802870 (+) True LOC122346075
XM_043240744.1 mRNA upstream 23167 12794219 ~ 12797438 (+) True dao.3
XM_043238274.1 mRNA upstream 115360 12703352 ~ 12705245 (+) True iscu
XM_043238450.1 mRNA downstream 412 12826590 ~ 12829604 (+) True pxmp2
XM_043239053.1 mRNA downstream 60051 12886229 ~ 12892279 (+) True ptger4b
XM_043239689.1 mRNA downstream 86477 12912655 ~ 12916020 (+) True fbp1b
XM_043239690.1 mRNA downstream 89992 12916170 ~ 12926498 (+) True erlin2
XM_043239691.1 mRNA downstream 89992 12916170 ~ 12926498 (+) False erlin2
XR_006251084.1 other upstream 13389 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 115364 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 304497 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 564933 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 564933 12249138 ~ 12255672 (+) False G35720
TU53623 other downstream 1157919 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1464242 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1473865 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 1473865 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1821311 14647489 ~ 14651911 (+) False fgf5

Expression Profile