RNA id: XR_006251084.1


Basic Information

Item Value
RNA id XR_006251084.1
length 1467
RNA type transcript
GC content 0.46
exon number 12
gene id LOC122346073
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12803789 ~ 12807351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTATAATATATGAAGTATACCTTGAATGCAGTGTACTGCAACTCTGCtgtatgcataaatgtaaatgtgtggaTTATTTCCAACCTGACATTACATGCAGCGCATAAACTATTAAGTTATGAATTAGGATTTTCAAGCAATAAAAACAACTCGAGCTCTATAACCTTGTTAGTTGTCATGATACATTTTAACTTTGTAATTGTGTCTATGTTGGGTGGACATAAGCCTTAATAAAACAACTTAAGCCTTTCCCGTGACAATGCAAACATATGGCAGCATTATGTATTCACTGGTGGATGGTTCAGAATACACAGTTAGCAGGCATGAGGGTGTGCATCATTGGAGCGGGGGTCATCGGCCTCTCCACCGCTCAGAGCATCTACCAGCACTTCCACCACAGGATCACCCCCCTCACCATAGAGGTGTATGCTGACGTCTTCACTCCACTCACCACCAGCGACGGGGCAGCCGGGCTCTGGCAGCCGTATCTCTACGACAAGGGAAACGTGCAAGAAACTCAATGGAACAAAGAGACGTTTGACTATCTGCTAAGCTGGCTCAGCTCTCCAGATTCAGTGAAAATGGGAATCTTCCTTCAGTCTGGCTACAATCTGTGCACTGAAACCTTGCCGGATCCCTCATTTAAAAACGCAGTGTTGGGTTTTCGTCAGCTGACTGAACGTGAACTGGATATGTTCCCGGGATACAGTTTTGGTTGGTTTAACACTGCTCTCATGATTGAAGGAAAGACATACCTGCCCTGGCTTATGGACTGGTTAAGTCAAAGAAAGGTCAAGTTTTATCACAGAAAGATTGGTTCATTTAAAGAGTTGGCAGATATTGGTGCTGATGTTGTCATCAACTGCTCCGGGATCCGATCAGGAGACCTCCAGCCTGATCCCGAGCTCAAACCAGGCAGAGGACAAATTATTAAGGTAGACGCTCCCTGGTTGAAACACTGGATCATCACACACAATTCCTCAACAGGAGTCTATAACTCACCGTACATCATTCCTGGGAGCCGTTTAGTCACTGTGGGTGGAGTTTTCCAAGTAGGAAACTGGAATCTGCAGAACAGTTCTGTTGACCATAAAGGAATCTGGGAAGAGGCCTGCAAGCTTGAGCCCAGTCTACAGCATGCGCGGATAGTAGAGGACTGGACTGGACTCAGACCCGCTCGCAGCAAAGTTAGACTGGAGAGAGAGACCATACGATCTGGACCAGCCTCGTTTGAGTGATTGCATCATCCAGTGCAGACAGTTTCTAGTGTGATAGAGCAGGAGCGAAAATGGTTACATCCAGTGtagaaacagGTCATTCATAACTACGGACATGGGGGTTTCGGACTGACCATCCATCGTGGATGTGCTGAGGAAGCTGCTCGTCTCTTTGGACAGATCCTGGAGCAGAAAGGCCTGCTATCACACTCTAAGTCACGTCTCTAATAAAGATCTATGCCTCTTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0003884 D-amino-acid oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52809 lncRNA upstream 35402 12767948 ~ 12768550 (+) True G35847
TU52802 lncRNA upstream 131746 12567184 ~ 12672206 (+) True G35843
TU52801 lncRNA upstream 150669 12650021 ~ 12653283 (+) False G35843
XR_006251058.1 lncRNA upstream 156864 12645284 ~ 12647088 (+) True LOC122345920
TU52838 lncRNA upstream 162307 12640267 ~ 12641645 (+) True G35864
TU52890 lncRNA downstream 75044 12882260 ~ 12882512 (+) True G35903
TU52891 lncRNA downstream 77789 12885005 ~ 12885284 (+) True G35904
TU52892 lncRNA downstream 78115 12885331 ~ 12885934 (+) True G35905
TU53143 lncRNA downstream 301416 13108632 ~ 13108853 (+) True G36062
XR_006251001.1 lncRNA downstream 492539 13299755 ~ 13312652 (+) True LOC122345423
XM_043240743.1 mRNA upstream 1082 12798124 ~ 12802870 (+) True LOC122346075
XM_043240744.1 mRNA upstream 6514 12794219 ~ 12797438 (+) True dao.3
XM_043238274.1 mRNA upstream 98707 12703352 ~ 12705245 (+) True iscu
XM_043239230.1 mRNA upstream 120225 12680681 ~ 12683727 (+) True ficd
XM_043239476.1 mRNA upstream 164678 12595277 ~ 12639274 (+) True wscd2
XM_043240738.1 mRNA downstream 13389 12820605 ~ 12826178 (+) False usp30
XM_043240739.1 mRNA downstream 13389 12820605 ~ 12826178 (+) False usp30
XM_043240737.1 mRNA downstream 13439 12820655 ~ 12826178 (+) False usp30
XM_043240734.1 mRNA downstream 13440 12820656 ~ 12826178 (+) False usp30
XM_043240736.1 mRNA downstream 13441 12820657 ~ 12826178 (+) False usp30
TU52846 other upstream 98711 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 287844 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 548280 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 548280 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 861880 11924228 ~ 11942072 (+) False smarca1
TU53623 other downstream 1176881 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1483204 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1492827 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 1492827 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1840273 14647489 ~ 14651911 (+) False fgf5

Expression Profile