RNA id: XR_006251087.1


Basic Information

Item Value
RNA id XR_006251087.1
length 4935
RNA type transcript
GC content 0.49
exon number 6
gene id LOC122346090
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32214031 ~ 32293782 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAATAGCATACATATCACTTCTGTAGTGCTTTGGACTTTTATAAATGATCTGTTACTACGTGAAAAAGAgtgatactgtatatttttaaaatgtattcttttgtgttccacagaaagaaaaaaaacagcattcagGTTCGGAGGAGGGCGAGTAAATaatgagctattcctttaagccgaaacagaggaggagagagagggatgaatACAGAGGAGTCTAACCCTTCTGTTTATTCGCTGCCGTTAGGTCTGCGCGTGTGCTTTACTCCCATCACTCCCTCTCTTTCCCATTGGCTGCTTCCCTCtcccacacacagacagacacacacacacacgcatgcactgGCTCTGAGCTCAGACACCAGAGTTGACGTTCTCGAGCGGAGGTCGAGAGAGGGACAGATGGGATCCGCACACACACCGGAAAGAAGCACCGTGCAGCACTGATCACGACCGACACACCGAGAAGAGAGGACAGCGAGACGGAGGAAAGATGTTACAGGACGAACAGGACGGGATTGAGAAACCTGAGCATCGCAGAAGCTTCCTGAAGACGACAGCGAGATCTCTTTTTAGTTTCCTGCTCTTCTGAAAAGGACAGTTTCATCTCATGCACTCGGATCGAACTGGGAAGTTTCTGATGTTCCAGTTCTGTACCTGCCTGAAGAAAATGATGAGGTGAAAGACACAAGCAAAGAAACTCAAGGACAAACAGAGAGATAAAAGTCAGCTTGAAGAGATGCATTGCCTAGTCCTGGACTGTCAAGATATGCTACACCAGAGAGGATTGTGCACACAAGCTTTGAGTTGGAAAGTAGGGCAATAAAGGTGTCGGGACATCCTCTCACTGGTCATCCTGAAAACTGTAttccattaacattttatttgcctTGATATTTTTAGGACAAGCATGGTTACAACTGCTGTGGACGTACACGGTGAGAGTTATGTGACATAAGATTTTGCTCTTGGCTATGAAACCATGATGCAGACCTCTGGGACATACTCGCAAGCCTACCCTGCCAAAATTTCATGTTCTTCAGGACTTGCGCAAAGGAAGTATAAACAAGGTTGCTCATTGATCGTTTAAGTGCCCCTGTGGACTAATGGGGCTGAAGCTCAGGATACACCCAGTCCCTCTTTTGGATATAAAGACACTTGCTTGTAAAGATTCTTCGTGCCAAAACCAGAACCTACTCTGACAGCATTACCACAAAGACTTACACAGAAACCCTCAGTCATGTGACCTGAGGAAAGGACCAGTCACATGCTCTGCTGCCGTCGGCtggtctgttttattttattttttttgttactgcaGCGTTTCTCATGTTCAGAGTTTGCCAAATGTCAAAAATACTGTGTGCTGTAACTGAATTTTGTATCTAATTAATTGTTCATTCACATTTGACTTGTGAAAGCAGAcgaaaaaaacccacacagtcaaatttttattaacatctaTGGTCCATAAACTACTCTTGGATAACATGGTGAGCAAAGAGCCCAACCATTTGCCAACTATTCACAGCCACAGCAATGGCAACCCAGACAAAACACCCACCACCGTGACTGTGCGCTCAGTGCTCCTTAATCGGAACTCTCCAGATATTGAAAGCAGACTTAAACGGAGACGAAATCGCACACAGCAGGTACGATTTAAAGATTTGGAGGATGACGATAAGTCCAAGGATAAAACTGAGAAAGCAAGAAGTAAAAGTCCAACAGAGGTTCCAAACTGGCAGAAAGAGTTGACAAACGGGCCCTCACTGGTAGGGGCAGTCCGTGGGGACATGGAAAAGACAATTGGAGCAGTGACAGCATTTTTGAAGAGAGCGCCACCGCACCCTCTTACCCCTGGGCCTACAAGACGCTGCTGGGTCCCAACACATCCATGTTCGCTCACACTGCCTCTGCCAACTCAGCCATGCAGGAGTACAGCCATCCAAACCTCACCCAGTTTGCAGAAGCCTCCCTTGCTCTCTGCCACGCAGACTCGCAGTCAAAGCCTGGGAGGAGCCTGGGATGATGGAGACTCCTCAGATGAGCTGACCACACAGGTCTACGTTCCACCTTGTAGATCACAGAAGAGCTCTGTCCAACCTTGTACCCCTGCTGAGCAATCAAGGTGCCAGAAAACTGAGGACAATCAAACTGCCTCTGCGGGTACATCAACACAATTTCAGCCATGTTCTGCAGCGCCACAAAAACAGTCTAGAAGGAGAGGTAGGAGGAAATCTTTAAACAGAGCAGCAAGTGATCCTGGGAAACCTGAGCCTTCTTGTACTTCTCCAACTAAAACTGTGCACAGGAGCCACCAACAGTCTAACCAACTAAAGAAGCTTCCATCCAAAGTTGTGGCACACAGAACTACATCAGATATTGTGCCACCGCAGAATTCTCCTAAACCAAACACAGGTCATAATACGCCATGTAGTGtctcttcaacaaaggctgaATCAAGCAGTGATTCAAAAATCCAGACTGTGCCAGATAACACCAGTTCCGAGGTAGACCCTGCATCTTGTCCCTCTCACATTGTACCCCCTCCATCAACCACATGTCCTAAAGAAGCGTCACAACGTTGCCCACTGCAGGCTGCTACGGAGAACGTCACTTTGACCCCCACTGTACCAGATCCTACCACAGCACAAGTCATATGCACTGTCACCACATCCTCAACACATGGGCAATCGTGCATGTCTCCTGTTGAGTCTAGAGGGCGTTGTTGCACACCTGGTATTCAGAAGACTCCTCCAGTGCCCGAGTCCCAATGCATTCCAGATTCACATACAGATTCCACAACTCCTGCTCAATCTGCGCCTTGTTTCCAGATGTTGGAGGAAACCATTCCATGCTCCAACACAGCTGGCTCCAAGGCAGCATCCTGTTCTCAAGGAGCACCTGCAGTTGCCTCTATATTCAGTTCCACACAGCAATGCCAGAAGACAACACAACCCATGGCATGTGGTAACACCTCAAATCAATCTGTGTACTCTGTGATAACTCCAACACAACCTGTAACTCCCATTCAGTCTGTGCCAAGATGTATGAGTCCTAAACAGAATGAGCCATTGGGTAGGACCTCTACCCTTCCTGTACAAACTCCTATATCAGCCACACAGACTCCAGCACCTGTTCAGCCTTCAACATCTTGTAAAATTCCAATGCAGTCTATACCATGCTGTGTCAAAGACAAACCAGCAACCTTTGGCTCTCCCACGCAACCTATGGCATCTCATAAGATTCTTACACAAACCCTCCCTCACAATTTGGTGCCATTTTCTCCCGAGCCATCCTGTGCCGCTACCCCTCACTCCGCTTCACACTTTAAGGGCCCCGTTGCAGTTCCAGCACACGCCATTCCTGTTGCACAAAATGCACTACATTGCATTTTGGATCAACAGAATGTGGCAACCCATGTCACTCCCTCCATCCCAGTTCTAATTTGTAGCCCTTCCACACAACCTGCACCAGGTAAACTTTCTGTCCAAGCATTGCCACACTGCAACACTAGTATACAAAACGCAGTGTCTTGCAGTAATCCCTCTCAAATCGTGCAACACTTTAAGACTCCTACTCAATCAGTATCGCATTCCAAATCATTTCCACAAAACATGTCACCTGTTCTCTGTCCACGTGAGGCAATGATGTATGCTAACAAACCCCAGGAAACTGTGCTTCCCTCTGCTAATTTCCGGCATTCTTTACCTCCTTACGCCTGCCCTCCACAGACTACTCTGCTGTACTCTAATGCTGGGGCGAGCCCCTCCCCTCCTCAGGCCTTCTGCTGCACTCAGGACAGACGAGAAAGGAGAGAGTTCATGCTTCCTccccctccacctcctcctcctccgtaCACTCCTCGCAAAGAGGGCTCCTCTACTCCTGGACAGCCCCGTAAGCCTCCTGTCCCCAAAGCTGAGAGCAACAACGCCGAAAAGGACAGAGTGAAAACTGGGGTAGTGAAGCCAAATGCTGAAGCAGGAACTCACTATCAGGCGGGTGAAACGCCACCTCCTATCCCTCCCAAAACTAAGGCAAGAGCTACAGTGAGGCCCACCTGTTTAGGTGGCCGACGGGCGATTCTCGGCCCAGAATCCCAGGCCAGTGCAAACCACTTGCCTCCTGCCGGTGGGACAAATCCCCAGGCCCCCCTTGGACCAGCGGAAGGCCAAGCGGACACTCTGCGACAGGTGCAGGAGCTACTGGGGGGGCTTATGTCTGGGGCTAAGTGTAAGCTGGACCTGGCAAAGGCAAAAGAGAAACTGTTTGGCCCAAACGGCCCTCTGTACGACATTGGGGCTCTGCAGTCTCAGCTGCATAGCCTGGAAGGGGTGTTGGAGACCAGCCAGAACACCATCAAGGTTTTACTGGACGTCATTCAGGATCTGGAGAAGAAGGAGGCAGAGAGAGATGGCTGATGTCACCAAGCCCTCTTATTTTTCATCCCCTTCCCTCCATCTGCATGACTCCATTCTGGCTAATCGGAGTAGGCGTTGTCCATAAGGCCTCGTCCAGGACCAGTCTCCTCAACCCCAGCCCTAATGTAATCGCGAGGAGGAAACTGATCAGGGATCAGAGGATTCAGGGTTATTTTACATCAACACAGATGGCGGTGGGTGACGAGGCTGGAGTGTGGCTCATTCCATCCACGTCAGAGCCCAGAGAACACAAACAAGGCCGTGGATCAGCCGGGCTCCTGATATCTCTAAGCTCGGGCTTACGCAGCCATCGGAGGTCTGGAGCGGCCAACTCAACAGATTGGATAATCAGACGCTGCTGCTGTCAGATGTAATCGAGCACAAATaagacACTCATACCGAACGGGACAGGACATTGAGAACTGTGGCACATGCAGAGACTGCGCCTGTATTATATACAGTGTGGAGCATGACTTCCGTCTTCAGGAAGGTCAGGTGACGCGAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60812 lncRNA downstream 235827 31977714 ~ 31978466 (-) True G41065
TU60811 lncRNA downstream 237242 31975936 ~ 31977051 (-) True G41064
TU60785 lncRNA downstream 309506 31723742 ~ 31904787 (-) True G41047
TU60963 lncRNA upstream 92345 32386127 ~ 32386472 (-) True G41177
TU60989 lncRNA upstream 144837 32438619 ~ 32439145 (-) True G41198
TU60982 lncRNA upstream 150500 32444282 ~ 32445281 (-) True G41191
TU61018 lncRNA upstream 183480 32477262 ~ 32477840 (-) True G41216
TU61019 lncRNA upstream 186573 32480355 ~ 32480713 (-) True G41217
XM_043239627.1 mRNA downstream 40229 32113896 ~ 32174064 (-) True tnca
XM_043239628.1 mRNA downstream 40877 32113896 ~ 32173416 (-) False tnca
XM_043239629.1 mRNA downstream 40902 32113896 ~ 32173391 (-) False tnca
XM_043239589.1 mRNA downstream 110507 32082560 ~ 32103786 (-) False rabl6a
XM_043239591.1 mRNA downstream 110507 32082560 ~ 32103786 (-) True rabl6a
XM_043240756.1 mRNA upstream 7577 32301359 ~ 32310140 (-) True zgc:73226
XM_043240757.1 mRNA upstream 19017 32312799 ~ 32314631 (-) True LOC122346085
XM_043240476.1 mRNA upstream 21905 32315687 ~ 32342744 (-) True LOC122345937
XM_043238594.1 mRNA upstream 122443 32416225 ~ 32421598 (-) True ostf1
XM_043239474.1 mRNA upstream 165676 32459458 ~ 32464623 (-) True LOC122345374
XR_006251008.1 other downstream 40470 32122284 ~ 32173823 (-) False tnca
TU60769 other downstream 491387 31721270 ~ 31722906 (-) True G41035
XR_006251005.1 other downstream 502556 31702453 ~ 31711737 (-) True apooa
TU60335 other downstream 1387935 30819515 ~ 30826358 (-) True G40752
TU61129 other upstream 450385 32744167 ~ 32745881 (-) False LOC122345737

Expression Profile