RNA id: XM_043240766.1


Basic Information

Item Value
RNA id XM_043240766.1
length 4455
RNA type mRNA
GC content 0.46
exon number 7
gene id brinp1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29174951 ~ 29270700 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCACAGAATGGAGCGAGAATGAGCAGAGTGCGGTCGAGAGTGAAGCATGAACTGGAGGCTCATTGAAGTCACTTACTTCCTGTTTATATGGAACCATATAACAGTTCAGTCTTCCCGCCAAGAGCCCTCGGCCAACGAGCAGCATGTTACCAAGCAGTTTGACTGGCTCATCTCTGACCGTGGGCCTTTCCACCACTCGAAGGGGTACCTATCCTTCATGGAAAGATTTCGCCAAGGATTCACGACCCGGTATAAAATTTATAGGGAGTTTGCACGTTGGAAGGTGAGGAACACGGCCATCGAGAGGCGGGATCTGATCCGGAATCCTCTGCCCTTGATGCCAGAGTTTCAGCGCAGCATGCGGATGCTCGGACGACGGCCGTCCACGCAACAGTTCATCGACACCATCATCAAGAAATATGGGACGCACATCTTGATCTCGGCCACGCTGGGAGGTGAGGAAGCTCTCACCATGTACATGGCCAAGAACAAGCTGGACCGGAAGATGGTCAACGCCACCCAAGGAGTCGAGGCACTGCACCAGCTCGCCTCCTCATACTTCATCGACCGAGATGGCACCATGcgcaaactccacgaaatacagatCTCCAGCAACGCCATcaagGTGACGGAGACGCGGACGGGTCCACTCGGCTGCAGCACGTACGATAATCTCGACTCTGTCAGTTCTGTTCTTCTTCAGAGCCCGGAGAGCAAACTCCATCTGCAAGGTTTGCAGGTCATTTTCCCCGAGTACCTGCAGGAGAAGTTCGTCCAGTCAGCTCTCAGCTACATCATGTGCAACGGCGAGGGAGAATACGTCTGCCGGAACAGTCAGTGCATCTGTCAGTGCGCCGACGAGTTCCCACAATGCAACTGTCCCACCACTGACCTCCAGATCATGGAGAACACGCTCATCGGCATGGCAGAGACTTGGGAGGCGTCTTACAATGACTTTGAGAACTCAGATGAGTTTAAGTCATTTCTGAAACGTCTGCCCGCAACACACTTCCTGCCGGTGAGCAGCGTGCACCTGCTGTGGGGCAGTGACTGGGACCTTCAGAACCGCTACCGGCTCTTGCAGAGTTCACTGGAGGCCCAAAGACTGAAGATCCAGCGCACGGCCCGGAAACTCTTCGGTCTGAGCATTCGCTGCCACCACAACCCCAACCACCAGATGCCCAGGGAGAGATCGGTGCTACAGTGGCTGAACCGCGTGCAGTCGTTCCTCTACTGCAATGAGAACGGCTTCTGGGGAACCTTCCTGGAGAGCCAGCGCACTTGCGTGTGCCACACAGGGGCCACCCTTTGCCAGCGTCCCATCCCTTGTGTGATCGGCGGCAACAACAGCTGCGCCATGTGCAGCCTGGCCAACATCTCGCAATGCGGCTCCTGCAACAAGGGCTACAAGCTGTACCGCGGGCGCTGCGAGCCGCAGAACGTGGACTCAGAGCGCAGCGAGCAGTTCATCAGCTTCGAGACCGACCTGGACTTCCAGGACCTGGAGCTCAAGTACCTGCTGCAGAAGATGGACTCGCGGCTGCACATCCACACCACCTTCATCAGCAACGAGGTGCGCCTGGAGACCTTCTTTGACCCGCGGTGGCGCAAGCGCATGTCGCTGACGCTCAAGAGCAACAAAAACCGCATGGACTACCTGCACATGATCGTAGGCCTGTCCATGAAGATCTGCCAGATGCGCAACAGCAGCGTGGACCCCATGTTCTTCGTTTACGTCAACCCGTTCAGCGGCAGCCACTCGGAGGGTTGGAGCATGCCGTTCGGAGAGCATGGATACCCACGCTGGGAGAAGGTGCGACTGCAGAACTCGCAATGCTTTAACTGGACACTGCTGTTGGGAAACCGCTGGAAGACCTTCTTCGAGACGGTGCACATCTACCTGCGAAGTCGCGCTAAGGTGCCCACCGTCCTGCGAAATGACACGGGCCAGGGCCCGGTGGACTTATCCGATCCCAACAAGCGGCAGATCTACATCAAGATCTCCGACATACAAGTGTTCGGCTACAGCCTGCGATTCAATGCCGACCTGCTGAGGAGCGCCGTGCAGCAGGTCAATCAGTCGTACACACAGGGGACCCAGTTCTACTCGTCCTCGTCCATCATGCTCCTGCTGCTGGACATACGGGAGAGAATTAACCGCCTGGCCCCTCCGGTGGCCCCTGGGAAGCCCCAGCTGGACCTGTTCTCCTGTATGCTGAAACATCGGCTCAAGCTCAACAACAGTGAGATGATTCGCGTGAATCACGCCTTGGACATGTACAACACAGAAATCTTGAAACAATCAGACCACCTGACTACCAAACTTTGCTGAAAACACAATTGGAAAGAAGAAACCGTTGTATTGAGgacaaagaataaaacaaaagggagcgagagaaagagagataatccgttttattttctttctccgTTTGATTTGGAACCTTTTGGTTTGCTTTTTTGATGTATTATTAACAACTTTGTAAGTGTAATTGTTAAACggaaactaaaaatacaaagagaaatcattttagttcactaaaggaaaagaaaacaaaaaacaacaacaaaaaatactgtatcATATTTGTCGAAGCATGTCTGtcatttcctaaaaaaaaaaaaaaaaaaaagaagaatatgaGAAAAGATCACAATTACTATTAAATTCAACATCCAGTGACACAGAGGCCTTGATTTTACTTTGAGGGAACAAAGGTACATCTTAAACTGCCATTCTTTACTGGTTAACACATTTTTAGAGATGTAAAGACAACTACGTAAGGGCAGAACCAAAATACAGTCATTCATTTGAGGCAGTACCATGTTGTTATCACGCATCTTTTAGATGAGGTTTATACAACGTAAGGATTCATTGACTGTACCGTGTCTTGTCCTTTCATACGACACCCTCTGAGAGAGCTTGGCATTGAGTTCAGTACAGATGTCCACCCTTTCTTGCTGGACATCCAGTTTTCTTGATTGCCGTTTATTGCAGCTCGCCAGGTGAACTGAATCCTGCGTGGGCTCCCTCTGTTGTATTTTCAGATTTGCGCTCTTGTTCTTCAGCGAGGTCAAGTCGCCTCGGTGCCTGAGTGCAGTATCTATGGTTGAACATAATCAATTCATGCTATTTCGTACTGCTTCGCATAATGTACACGTTGTGATTGCTGATGTGTCAAGCTTTTTTGCAGCACCGTGAAcaaaatttgatcatttttcttTAAGGGTCAGCATAAAGCCATACATTTCTCAGagggatgaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagaagctgGGCACATTTTGTGAGAAATGTCCTATaaattgcttttgtatttttgtttttcagtctttttctaATGAAATATAGCACAgtggtctgaaaaaaaaaagaaaagaaaattatatatatgtaccgCGGGATTATGGCATGACATTGTAAAGCCattgcattttcattaacaAGAGTGAATCCACAAGAACAGTATATTAAAGCTTCAAATATCTATGATGGTTTTAATCTCAAAATCTGCTTGTATACCAAATGTACACTTTACTTTTATAAGATTTCATTTGGGTTTTATATTCCTTGATGCAATTCAGGTTTAACTTTTTGACATGTCGACTGATTAATCTCTCTACTCTAAAATCTTGGGACgggggatttttatttttttattttaatttatttttttgtgcaaaagaaCCCTAGACAACTAGAGCAATTTCTTGCATAGGGAGAATGCCATTATTATTAgcgtttattattttattgccattattattattcaatctTATTAAGTGCCTGTtagctatccctttaatgcttttttcttttttttcttttctttttttgtgtttaacaggAAGATACCATCTTAATCTAAACACATGCCATTTGACTCATGGGAACAGGGCCAAAAGCTTTCTTGCTGTACTCTGCATGAATTGAAAATAACCTTTTGAGAGGAGACTTAACTTGGTTAATGAATTAGagttaaatgtgtattataagTGTAAATACCTATTTTGTCTTGATATAGCCATGGATTCAAAAGCTTTTCTTAGATAACTGCAAATGAACCACAGCCCATTAAACACAAAGCAAACTCCCCTTGAGCACAAGTTCTGTAAATATCGCAGGTCCCCCACAAAAAGCATTCGCCCTCATCTGGAGAAACATCACCAGCTGAAATTGATCTTGTCCAAGCTAAATCTGTTAATGATCTACACGAGCACATGCTTACAGCCTTCCATACACTTCTGTTGAAACCATGTACGACACACTTTCTGATAGAGCGTTCAGTGGGTTGAGAAACTGCTTTCAAGTACTTTATGTAATTTCTGCTGTTCTGTTGAAATAACTATATCGGCTTTCttcaaaatgaatgtttcaaataataatctatttctcattaaaatgctatatttaataAGAAGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59338 lncRNA downstream 844475 28326897 ~ 28330476 (-) True G40083
TU59336 lncRNA downstream 882014 28292726 ~ 28292937 (-) True G40081
TU59333 lncRNA downstream 919744 28254921 ~ 28255207 (-) True G40079
TU59330 lncRNA downstream 928286 28246418 ~ 28246665 (-) True G40076
TU59328 lncRNA downstream 931296 28242661 ~ 28243655 (-) True G40074
TU59464 lncRNA upstream 53282 29323982 ~ 29325074 (-) True LOC122345120
TU59465 lncRNA upstream 53414 29324114 ~ 29325074 (-) False LOC122345120
TU59585 lncRNA upstream 375917 29646617 ~ 29647013 (-) True G40264
TU59587 lncRNA upstream 414428 29685128 ~ 29685727 (-) True G40266
TU59589 lncRNA upstream 530494 29801194 ~ 29805802 (-) False G40268
XM_043238409.1 mRNA downstream 230187 28943741 ~ 28944764 (-) True LOC122344834
XM_043240825.1 mRNA downstream 491782 28337401 ~ 28683169 (-) True LOC122346138
XM_043238490.1 mRNA downstream 1260487 27910230 ~ 27914464 (-) False LOC122344872
XM_043239775.1 mRNA upstream 32443 29303143 ~ 29323685 (-) True LOC122345544
XM_043239773.1 mRNA upstream 32443 29303143 ~ 29323683 (-) False LOC122345544
XM_043238949.1 mRNA upstream 53404 29324104 ~ 29326115 (-) False LOC122345120
XM_043239776.1 mRNA upstream 55283 29325983 ~ 29335688 (-) True LOC122345545
XM_043239534.1 mRNA upstream 344019 29614719 ~ 29655049 (-) True eng
TU59335 other downstream 910247 28255828 ~ 28264704 (-) True G40080
TU59237 other downstream 1279497 27889123 ~ 27895454 (-) True LOC122344874
TU59072 other downstream 1776231 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 3063549 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 3065381 26109500 ~ 26109570 (-) True trnag-gcc_63
TU59455 other upstream 189885 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 346299 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 655685 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 821249 30091949 ~ 30093513 (-) False rnf170
TU59791 other upstream 821249 30091949 ~ 30093513 (-) False rnf170

Expression Profile