RNA id: XM_043240767.1


Basic Information

Item Value
RNA id XM_043240767.1
length 4206
RNA type mRNA
GC content 0.52
exon number 21
gene id lrp13
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 399992 ~ 411093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCACCTGATCAATTAAGCAGCATCAGCCTCAGCTGTTCTCTCGATTAAAGCGCGTCTTCTCGAACCGAGGCGGTTTGACCCGCTCGTCCCTGCAGTCATGTGTTTGTTAGTGCTGCTGAACGTCGCTTCAGGGATCTTTCTGCTTCTGAGAGCTGAATGCGTGCAGGCTGCAGTAGCTTCTCGTGGTGTTCCCCTGCACTGCAGACTGGGCTTCAAACCCTGTAAGGACGGATCAGAGTGTGTGCTGTACAGTCATGTGTGTGACGGCGAGAACGACTGTCCTGACGGCTCTGATGAAGACGAATGTGCTGCTGTCTGCAGCATAGGTCAGTTTCAGTGTGCCCACGGTAAGAAGTGCATCGAGCGCCGGCAGGTGTGTGACGGTGTGGCTCAGTGTCAGGATCGCTCCGATGAAGTCGACTGCTTCAAGCCAGAGGAGGGCTGCGGTCATCGCTGCGATAAAAACCGCTGCATCCCAGAATCCTTTGTCTGTGATGGAGATGCAGACTGTGCTGACGGCAGCGATGAAGCCAGCTGTGATATCAGCCCTGGTGATGATAATGACAtcaaagaggaggaagaggaaaaaaagacggAGAATGAAGTCTCAGGAAGCCCTCATGTAACTAAAGGACCTCTGCACTGTTCATTCGGCTCCAAGTTATGTAGAGACGGGACGGACTGTGTACTCTTTAATCACTTGTGTGACGGCGAGCTTGACTGTAATGACGGGTCTGATGAAGACGACTGCTCTGAGAAGTGTGAAAATGGTCAGTTTCAGTGTGCCCACGGTAAGAAGTGCATCGAGCGCCGGCAGGTGTGTGACGGTGTGGCTCAGTGTCAGGATCGCTCCGATGAAGTCGACTGCTTCAAGCCAGAGGAGGGCTGCGGTCACCGCTGCGATAAAAACCGCTGCATCCCAGAATCCTTTGTCTGTGATGGAGATGCAGACTGTGCTGACGGCAGCGATGAAGCCAGCTGTGGTGAGGAGAGCTGCAGCAGTGCTGAATGGCAGTGCAGCAGCGGTCAGTGCGTTTCAGTCAGTATGCGCTGTGATGGACACCCGGACTGCAGAGATCATTCAGACGAGGAGGGCTGCACCGAACCTCCGCCCTGCAGCACACAGCGCCGCTGTCCGAAGAGCCAGGAGTGTCTGCTGGACGAGTGGATGTGTGACGGAGAGACGGACTGCAAGGATGGCACGGATGAGAAGAACTGTAAGGAGTCTCCAGTGCAGTGCGGTGAGTTCCAGTGGCCTTGCAGCTCTAACACGCAGTGTATTCCTGAAGCCTGGCGCTGTGACGGCGCTGAAGACTGCAGGGATGGAAGCGACGAATCTGCTTGTCCGAGTGTGTCCTGTCCTCCTCACATGTTCCAGTGTGGTAGCTCGGAGTGTGTGGACCCGTCTCAGCTCTGTAATGGAGTCACTAACTGTCTGGACGGTTCTGACGAGGGTGGGACCTGTAAGACGGACAAATGTTCTGATCCGTCAAAGTGTGCACAGGACTGCCACAGCACACCTACAGGCAAGCGCTGTTTTTGCAGGATGGGCTACAAGCCCGTGGATAGTGGTGCGGTGTGTGTTGATGTGGATGAGTGTGTGGACCGTCCAGACTTCTGTTCACACTACTGTAACAACACTCAGGGCTCATTCGAGTGCTCTTGTAGTCATGGTTATGTTCTGGAACCTGATGGCCACAGTTGCAAAATCACAGGTGAGCCGTACCTGCTGGCATCTGTGCAGTCTGAGGTCTTCCTGCTGGGTCTGAGGAGCTCCAGTCTGGACGTTCTGCTCTCGtcagaaaagcattttgttCTATCACTTGACTACGACTGGCAGAAGCAGAGAGTGTACTGGATCAACCTCAACACGGACAACATAAAATGGTTGTCACTAGATCAGAAGAGCAAAGGAACCTTTATTAGAGGTATCAATGCAGACAGTCTGGCAGTGGACTGGGTGGCGAGAAACCTCTACTGGGCTGATGGCGTCAACAGCCAGATCAACGCAGTAGGACTGGACGGTGACGTCACCAGAACCACAGACCGTGTGGTGATCCTGAGTGAAGATCTAGGGCAGCTTCGCTCCATCGCTCTGCTGCCACAGGAAGGAATTATGTTCTGGTCAGAAACTGGGGATGAGGCTCAGATAGAAAGAGCAGGAATGGACGGCTCAGACAGACGTGTGCTGGTCAGTCGCTCTCTCCGATGGCCGGTCAGTTTGACAGTGGACTCCCTGCATCACAAAATCTACTGGACAGATGAGAAACTCAAGTGCATAGGATCAGCCAATTTTGATGGAGGAGATATTAAgATCTTGCAGATGATGGAGACCCCCAGTCCATTCTCAGTATCTGTATTCAATGATAAGGTCTACTGGTCTGATACCAAACGAGGAACCATTCAGAGAGCTCACAAAATCACGGGCAAACTGCGCCAAGTCCTGCTCAAACGTCCTGGACAGCCATTTGGTTTAAAGgtcATTCATGGACTTTTCCAAGTGGGCGTCCCTAACCCGTGTGCTTCCCAGCGCTGCTCTCACCTGTGTGTTTTATCCCCGGGGATGAAGGCTGTGTGCAAGTGTCCGTCTCAGTTGCTGCTGGATGAAGACGGGCTGAGCTGCTCCAAACACAAAGACTTGTCCTTCCTGCTGTTTCTTTCTCCAGCTGCAGTCACGCAGGTTTATTTACAGAACAGACATGGCAACATGGGCCTGAAGAACTGGCCTGAACATCGGCGTTTCGACCTTCCCAACATGAACAAGCCGACCATGTTAGATTTAGTGCTGCGTGACCTCACCCTGTACGTGTCCGATAGCGGGCAGCCCATTGTAGGGCTCTTCAAGATGAAGGATACAGCGCTGGTGCCTCGTGGGAAGCTGCTCCAGCTACATAAGGACTCGCTGCGCACGTTCTCAGTGGACTGGATCACTTTGAACGTGTACTGGAGCAGCGAGAAGCTGCACGGCCTGCAGGTCACCTCGTCGGATGGAGCACACACCAGTGTGATAATAAAGGACGGTGTCGGAGCCATTGACTCTATTGCTGTAGACCCACCCAGCGGACACCTCTGCTTCTCAAACAAAGTCCAGGAAGGTCACACGACGCGGGTGGAGTGTGCCTATATGAACGGACAGAACAGGACAGTGGTGTGGAGTAATTCAGTCCGGCCAACTTCACTGATCTTGACAGATGAAGGGAATAAACTGTACTGGGCCGACACTGGTCTCTCAGTAATCGGTTCAGTTTCTGTAGATGGTTCTGGATACAAGGAAATAAAGACAGAAGGCAGCTTGATTGCATTTGCCTTGGTTAATAAAGTTCTTGTTTggattacaaaaaaagAGTCCACTAAGTGTTGGTTTAGTGATGACGAGCATACAGGGAAACTGTGGTTTGAAGTGGACGCCGACATTGTGGGTCTGAAAGCCTTCGCAAAGTCAAGACAAAAAGGCACCAATCTGTGCTCTAATGGTAATGGAGGTTGCGGTCACCTCTGTCTTGCGTTCCCCGGAGGAATGGCATGCCACTGTGACCATAATCACCGCCTGGTCAACAGCAGAGACTGCAGTCCAGACCCCCGCTGCCCTGAAGGCACCAAACCATGCCTGAGCGAACACATCTGTCTACCTCTGGAGCAGTTCTGCAACGGCGTCGCCGACTGCCCAGATCATTCTGACGAGAACTGTTTACAGGATAAGCAGAATAATGTCTGGCTCAATCCTAAAGTGTTTCGTCCAGGCTTGAGTGATAATGTCATACCAGAGAACGTGGAGTCTGAGGCTTGTAGTGTTACACTGTGTAACGGCAACGGTAACTGTGAAACCCAGAACggagtgactgtgtgtgtctgtgaggcGGGTTACACCGGAGAGCACTGCCTGGATGCTTCGAGCGGCCTCTCAGAGGGGCCACTTCTCTATGGAGTAGTCGGACTGTGTGCCGCTTTGGTCGTCCTGGGGGCCATCTTCGGTATCATTCAGAGGAAAAAAGCCACAAACCGGAGGCAAACCACGCGGGTTATGGACACGCAGGAAACGGGCATGAAGAAACTAGAAAGACGAGAGAAATCTTCAGAGAAAAAATCTAATGGAAAAGACACCGAATTCTCAGAGGAAAATGTGGTAACGTCTGTGGACTAGCTTCATCTCGACAGTGGCATCTTGgtttcttttgaaataaaacggCTGCATTTTGAAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47396 lncRNA downstream 15756 382052 ~ 384236 (-) False kcnv2b
TU47414 lncRNA downstream 47913 350967 ~ 352079 (-) True G32150
TU47337 lncRNA downstream 195456 162490 ~ 204536 (-) True G32086
TU47339 lncRNA downstream 195456 162490 ~ 204536 (-) False G32086
TU47357 lncRNA downstream 374100 25514 ~ 25892 (-) True G32102
TU47450 lncRNA upstream 20537 431630 ~ 431890 (-) True G32177
TU47471 lncRNA upstream 45024 456117 ~ 482271 (-) True G32186
TU47475 lncRNA upstream 47387 458480 ~ 465004 (-) False G32187
TU47477 lncRNA upstream 52921 464014 ~ 479881 (-) True G32187
TU47481 lncRNA upstream 53971 465064 ~ 470468 (-) True G32191
XM_043240769.1 mRNA downstream 309 398419 ~ 399683 (-) True si:ch211-12e13.10
XM_043240378.1 mRNA downstream 12114 382845 ~ 387878 (-) True kcnv2b
XM_043240377.1 mRNA downstream 27174 371671 ~ 372818 (-) False LOC122345880
XM_043240376.1 mRNA downstream 27174 371671 ~ 372818 (-) True LOC122345880
XM_043240367.1 mRNA downstream 60261 316841 ~ 339731 (-) True adamts12
XM_043239490.1 mRNA upstream 75951 487044 ~ 511879 (-) False gak
XM_043239489.1 mRNA upstream 75951 487044 ~ 511879 (-) True gak
XM_043239576.1 mRNA upstream 102339 513432 ~ 549044 (-) True sh2b3
XM_043240366.1 mRNA upstream 138708 549801 ~ 555622 (-) True pheta1
XM_043239731.1 mRNA upstream 145561 556654 ~ 583095 (-) True ddr2l
TU47390 other downstream 150237 246943 ~ 249755 (-) False rictora
TU47359 other downstream 363644 35777 ~ 36348 (-) True G32104
TU47358 other downstream 365275 33779 ~ 34717 (-) True G32103
TU47356 other downstream 376043 20139 ~ 23949 (-) True G32101
XR_006251108.1 other upstream 901511 1312604 ~ 1336184 (-) True castor1
XR_006251110.1 other upstream 901513 1312606 ~ 1336184 (-) False castor1
XR_006251109.1 other upstream 901513 1312606 ~ 1336184 (-) False castor1
XR_006251111.1 other upstream 911203 1322296 ~ 1336187 (-) False castor1
XR_006250937.1 other upstream 931513 1342606 ~ 1354414 (-) False lrrc74b

Expression Profile