RNA id: XM_043240777.1


Basic Information

Item Value
RNA id XM_043240777.1
length 5563
RNA type mRNA
GC content 0.49
exon number 41
gene id ttc37
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18815078 ~ 18832513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAAACTAAACAAGTTCGATCGATTCTCAGATTGTTTGATTAAGAAAATGTCCAGTAAAGAAGTAAAAGCCGAACTTAAAAGTGCCAGAGAAGCCatcaaaaataaagagtttaaagAAGCTTTGAAACACTGTAAgGCTGTTCTCAAACTTGAGAAGAATAACTATAATGCCTGGGTGTTTATTGGAGTGGCAGCTACAGAACTGCAGCAGCCGGATCAGGCACAGACCGCCTACAGGAAGGCCACTGAACTAGAGCCAGAGCAACTGCTTGCATGGCAGGGTTTAGCAAATTTGTACGAAAAAAGTGACCAAGCAGCTTTCAAAGCGGAGCTACCAAAGATTTACCAGAAACTTATTACACTGTATGAAACCTCAGACaaagcaaaatgttttgaagtGAGCAAGAAGCTGGTGGAAGTCTATCAGTCGGAAAAGAACTATTTACAGGTGGCCAGAGTGTGGAGGAGGCTGATCCAGGTGAGGGAGGCCGAGGAAGGGGTGGAGGACGTAGAGCTGCTGGAGCTGTGGAAGGAGATGACCAGACTCTTGCAGGACACTGTTGAGGAGCAGGACAATGAGACTCAACAACACCTGATATCAGCGTTTGAAAGAGCTTTGCAACTGACTACAGACGTGCCTGATGAAGCCCACAGGAGCCTTTTGCAGGACTACATTAAATGTCTTTCCAAGGTTCCTCATGAGGCGGCCAAGCTGAAGGAAGTTTGCGATGCCGCTCTGTCACGCTATCCGACACACTCCTACCCTCTAGAGGCCCTCAGTGAGCACTACATCAGAGCAGGTGACTGCAGTGAGGAAGCTGTCCGCTGTTTCAGCCGCCTCTCAGAACTGGATCCGAACAACTCGCATGCTCACTTTGGTCTTGGTATTAAAGCTTGTCAGGATAAAAAATACGAGGATGCCATCAAAAGCATTAGTCTAGGATTGAAGCGTATGCGCTCCTCCATCATTGGCTGGTACAATCTTGCTCTGGCTCagctaaaaatgcataaatactctGACAGCGCCACAGCTTCCAGCCAAGGGCTGAAGTCAAGTGTGGGGACCTCTGATGATTGGACTCATAAGCTGCAGAGGTTGAAACTAGAGGCTCTGGTGAGAACAGAAAGAGAACAAGATGCTGATGAAGCTCTGCAGATTCTTACACAGATTTCAGATGCCAAAAATGACCCAGTGCTTTTAGCGTTGAAAGGAAGAGCTCACTTGCAAAAAGGCCACACCGAGGAAGCGTTTCAGGTTTCAGCTGAGCTACTGAGCTCTCACCCAGGATCCGTGGAGGGTCTCGCTCTGAAGGGGCTCGCTCATGTTGTGAAAGAACAGCACAAACAAGCTGAAGAAAGCTTTCTAGAGGCTTTATCCGGGAGCCCAGATAATGGGGAGTTGTTCTTTCTGCTGGGGCGCCTGTTCTGGAACATGGGAGAAGAAATGCGAAGGGATCGGAGCAAAGCCCATACACATTTACTCAAGgCTGCTAAACTGGACCCGTATCTCGCTTCGGTGTTTCGTTTTCTGGGTCATTACTATAGAGAGATAGCAAAAGATCAGGGCAGAGCCAGAGGCTGCTATAAGAGAGCGTTTGAGCTGGATCCCTGTGATGCGGAGGCTGGAGCGGCTACTGTTGACCTCAGCATGGAGCAGGGGGACATGGACTCAGCTCTGACTGTTCTGCAGTCTGTAACAGAGAGAGCCACTCCTGGCTCTGCTAAATGGGCCTGGATGAGGAGAGGGCTTTACCACCTCAAAATTGGCCAGCATCAACAGGCTATTGCAGATCTGCAGGCAGCGTTGAGGGCTGATCCTCAGGATTGGGTGTGCTGGGAATGTTTAGGTGAGGCGTATCTTAACCGCAGGAGTTTCACAGCTGCTCTGAAAGCATTCGATAAAGCACATACTTTGCAGCCCACCTCCATCTACAGCCTCTATCAGACTGCCGCCATTAAACAGATCCTCGGCCGGTTTAAAGAGGCCACTGTTGAGTACAGGCAGATCTTAGAGCAGGAGGACTATGTGCCAGCATTGAAAGGTCTGGGTGAATGCTTGCTAGCCTTGGCTAGAAGTGCACTTGATGACTATCTTGATGGAAGAGCTGTAGATTTGATACAGAACGCCATCCATTACCTTTTCAGAGCTTTAAAGCAAAGGCCAGACCTGTCGTGTCTGTGGAAGTTACTAGGTGATGCCTGCACCACCTCCAGAACCGTGTCCCCAAACCGAGCCAAAGTGCTGGTGCCTGGAGCTCTATGTGGAATGGATCCACCTGATCAGGGCCATACACTGGACCAGAGACAGCTCCTCATACTAGGAGAAAGGTGCTTTGGTCGTGCTTTGAAACTCATGCCGGAAGCCCCTAGTCTGTGGTGTGACCTTGGCCTGAACTACTACCACCAATCCAGACTGGTCAGCTGCCTCTGTCCTGAAAAGGATCGGCAGCCTCTGTTAGAGAAAGCCATACAGTGTGTGAAGAAGGCGATCATGCTCGACAGTGCAAATCACACATACTGGAATACACTTGGGGTGGTCTCCATGGCAAAGGGAATAGAAAACTTTGCACTCGCACAACACTGCTTTGTTAAATCGGTAAAAGAGGAGTCAAATaatgtgGTTGCATGGACCAACCTTGGTGCTTTGTATCTAAAGAAGGGAAATATAGagctctcgCATGAAGCTTTCAAGATTGCTCAGTCTCTGGAACCCCTGTATGTGAACTGCTGGATTGGACAGGCCCTGATTGCTGAGTCGGTGGGCAGTTACGACACCATGGATCTTTTCAGACACACCACAGAACTGAGCACTCATACTGAGGGAGTGAAGGGTTATGCGTATTGGGTTTGCTCCACACTGCTGGACAGGAGCAACAGAGACTCAGAGATCTACCTCTACAACATAGTCCAGATGAACGCTGTCTCTGCTGCCCAGGTGGCTCTGAGCAAGTACACCGAGAGGATTCAGACGGACCCAGACGCCTTCATTATGCTCGGTTATTTGAACACACACCTGCAGTTGAGGAAACAGGCCACTGAAGCATATCGCAGAGCTGTCGAGTTGCTTCAGGCATCTCCTCACAAAGATAAGCTCAGCTTTGCTCTGAGGGGTTATGGACGTGCCCTCAGTGATAATGGACAGTGGGAGGAAGCAGTGCGTATTTATTCCTCCACACCACTAGAGGAGCTGCACGATCTCATCGGACTGGCGCTCGCATGTTTCAGAATCAGTCGCTTGCCAGAGAGTGTTCAGGCCTATGAAAAAGCCCTTGCAGTTGCCTCtagcgaaaaggaaaaggcCTGCATACTCACTGCGCTGGCCCTGATACAGCACAGACTGGGCAACATCGATCATGCCAAAACGCTTCTCTTCAAGTGctcCATGCTGAAAGAACCTGTCTCCGAGAGTTTGTGGTGTCTGTGTTCCCTGGGTTTGGTACATGGGGATGTGACCCTGGCAAGTGCTACGCTTACTGAGCTTCTAAAACTGGGGGAATGTGTAGGAGGCGCTGTGGAGGAGCGCTGTCTGCTCACTTGCACCCTGCTGGCCCTGCAGGGCAACTATAACGGCGTACACAGGGAGGCTGCTAGGGCTATACACAGGAACCCCGGAAATCCTTCTCTCTGGGCTCTTCTCTCCAGACTGGTCCCACAGTACTGCCCCAACAAAGCCAATGGAGGAGCTGTGGCCGGCAGTGTGGCGTGTCATGCTAGCTTGACACTTGGAAAGAGGGCGTTGCTGTACAGTGGAGTGAATCAGTTGGCCTCAGGCCGGCACTCCGGTGAAGACAGCAGACGCAACGCTCTGAAAACAATCCAAAGAGCTGTGCTGCTGTGCCCAGATGATCCTGCTGGGTGGGCGGGGCTGTTGGCCGCCTGTCACACAGAGAACACTGCATGCTTACTCCAAGGCTCCGTCCCTCGCAGAGAAGATCTGGAGAGGGCGCACATGGCACTGGTTTCTGAAAAAGTGAAGGGCCTGCAGGCAGAGGACGGGCTCTTGGCTCAGGCTCTGGAGGGATGGGTGCTGCAGCAGGCCGTGACAGGACTCAAACAGAGTGGCCAATATGACCAGGCAGAGACTCTGTGCtcccagGTTCTGAGCGTATCTCCAGAGCATCCTGTGGTGTTCCTGATGTTTAGGCAGGTTCAATGTGAGCGCCTCCTGTTGTCTGAAACTGGTAAAGGTGTTCCTCCTGCAGTGCTGGATCAGCTCAGCGCCGCTGTCATGGCCAACCACACGTCTGTGTCCGCCTGGCATTGGTTGGCAGAAGTGTACCGTTCTCAGGGTCTGCTGGCTCAGGCCTCCGTGGCATACAGACAGAGTCTTCAGCTGGCCTCTCAGCTCGGCGACCACTTTGGAAAGATGAGCAGCCTGCTCCGACTAGCCCTGCTGGCACTCATGCCGTGTTTGGCTGGCGTCTGTGTCTCTGAGTGGAAGGATCTGGTGTTGGAGGCCAGCACTGAAGTCTTAAAGATGGGCAGCTCACCAGTAGCTCTGCTCTTCCAAGCCTTACTGCAGTTCTCTATTAAGATGGGTGCCAGGGAAACCCGTCGCCTGTTGGAGAAAATAGTTTATGCTTCAGCCTCAGGCGGCTCTGAAACAATAGTGTCAGTGGCCCGCTGGTACCTCCTGCGCCACCTGCACACCAAAGATGACCTGGAGCTGATAGATACTCTGTTGGTGAAGGCAACAGCAGAAGGAGACAGCAGGCTGGTGGACTTCCACAGGCGCCTTTACCCATCCAGCTGAGACCGTCCACCATCATTACATCCCTCAGGGGACCTGTATTTCACCATCTAACCTGCTTCATCTTCAGCTGCACACAGAGCAGTTTACTCACcaaataatgcatttacaaatcTGGAAGTCTTTAcatgacaatttttttatgtatggaCATATCTGCTAAGCTAATTTAAAAAGACACTTGATCTATACGATTAGCTCTTTTATGCAGTTTATGCTATAGCTGAATTAGCCTATGCTATTAGCCTATGTATTGCATTCACGTGAGcgttgaaaaatgaaaatacatgaaaaatgacattaatcattcatgattttttttatgtgccttCCCCACAGCGACAGTTTTGCCATAATTAGTATTACCACAAGGCTCAGCTGACTATAATAAGCTAATCTGCTAATGCAGTTATGTAACTTTAAAAGAGTCTGCTGCGGATCCAAAATCACTATTGGAAACATTTGAAAGTGCAGCAGTGGGATATCTGCTCTTCAGATTGTCTGTTTATGGTCAGAGAAACcaagaatttaaatgaattgctTTTTATGTGGTGCATTGTTATCTTTGCCCTACAGATGCACTGGAAGAACTAATTAACCTCTGTTTTCCCTCACTGTCATTTCCAAATAACTGACTTTACTCATCTCTGCAGAACTGACCTATACAGTCGACTGCAGAATGCTATTAAGTCCCTGAAATATTAAAGCACATAcgaaaaacagtaaataataattgtttatcaTGTTGGGTGCATTTTTGGTTTGCAAGTGTGTATTGGTggcttgaaaaattaaatgaaaacaaagcaa

Function

GO: NA

KEGG:

id description
K12600 SKI3, TTC37; superkiller protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55526 lncRNA downstream 1307 18813564 ~ 18813771 (-) True G37637
TU55429 lncRNA downstream 423430 18373317 ~ 18391648 (-) True G37571
TU55428 lncRNA downstream 441828 18372208 ~ 18373250 (-) True G37570
TU55427 lncRNA downstream 444261 18370523 ~ 18370817 (-) True G37569
TU55419 lncRNA downstream 449611 18362413 ~ 18365467 (-) True G37565
TU55695 lncRNA upstream 236401 19068914 ~ 19075774 (-) False G37757
TU55692 lncRNA upstream 237989 19070502 ~ 19075774 (-) True G37757
TU55715 lncRNA upstream 290512 19123025 ~ 19123308 (-) True G37774
TU55717 lncRNA upstream 300300 19132813 ~ 19133144 (-) True G37776
TU55737 lncRNA upstream 342950 19175463 ~ 19177884 (-) False mtx3
XM_043240778.1 mRNA downstream 9216 18678708 ~ 18805862 (-) True mctp1a
XM_043240783.1 mRNA downstream 9370 18678708 ~ 18805708 (-) False mctp1a
XM_043240780.1 mRNA downstream 9370 18678708 ~ 18805708 (-) False mctp1a
XM_043240782.1 mRNA downstream 9370 18678708 ~ 18805708 (-) False mctp1a
XM_043240781.1 mRNA downstream 9370 18678708 ~ 18805708 (-) False mctp1a
XM_043238780.1 mRNA upstream 36529 18869042 ~ 18877023 (-) False hmgcra
XM_043238778.1 mRNA upstream 36529 18869042 ~ 18877023 (-) True hmgcra
XM_043240124.1 mRNA upstream 88914 18921427 ~ 18932581 (-) True ccdc180
XM_043239796.1 mRNA upstream 100187 18932700 ~ 18937965 (-) False card9
XM_043239795.1 mRNA upstream 100187 18932700 ~ 18937965 (-) True card9
TU54999 other downstream 2101911 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 2101911 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 2181957 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2436583 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 2558339 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1034873 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1034873 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1036301 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 1219146 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 1293076 20125589 ~ 20127390 (-) True G38140

Expression Profile