RNA id: XM_043240778.1


Basic Information

Item Value
RNA id XM_043240778.1
length 5085
RNA type mRNA
GC content 0.49
exon number 23
gene id mctp1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18678708 ~ 18805862 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTCTGCAATTATGTATTCATGTACTGGCTATTTCTTAGGTTACTGTCAGGTCATTAAGTCATTAAAGAGTGAATCAGATGCACGGTCACGTTTATTTCACGGTTTAGACTTAAAGGTTAAGGTGCCGCGAAAGACCCTCAAACGCAATGTCACTAGCAGCAGCATCACCAGATAAAGTGAATGTGTTGTAAGTGCCCAAGTGTCATTTGCGATCGAGAGCACGCGCTCCTGTGCTCTCGCCCGCGCGCTTCAGTGTCACTGGCGCTCCGCGCGCTGACAGCCTgctgccgctgctgctgctggacgGGGACCATGGAGGAGAAATACAAGGAAGAGAGCGCCAAAGACCCGCAATCGACGTCCTACCAGAGAAGGATGTGGAGGAATTTCCAAGAGAAGACCAAACCGTTTTTGAGCCCCAAACTGGGGTCCGAGCGACGCAGCGGGGATGCTAAAAAAGAAAGCGGGCTGTggatgtttaaaagaaagaagaaacaggTCCTGGACCGGGTCTTCTCGTCCTCGCAGCCCAATCTGTGCTGCTCAACTCCGCCGTCTTTCGTAAGCGACAGGACCCTGCGCGAGCAGCCGGACTCCGGCGCCGGTAAAGGGCTTGGGATCTCGCCGCTGGCCGCCGCTGATGGAGCTTCAGTCAGTAAGCCGGAGATTTCCGTATCCGCGCACGGAAGCCCGAAGCTGCTGGTGTCTCATCTGGTGATGTCCCAGCAGAAGAGCTCGTCCTTGGGCTCGACGTGCTTCGAGAAGCTGGTGGTGGATTCGGCAGCGTCCAGCGAGGATGAGCTGGCGAAAAACGCGAGTGACCTGGGCATCAATATTGTGGAGCCAAGTAATGAAGAACTTCTTGCCCCGTCAAAGCCAGGAATGtatcagctggacattgtgttaAAGAAGGGCAATAATCTGGCCATCAGGGACAGGGGAGGGACTAGTGACCCATATGTGAAGTTTAAGATCGCAGGGAAAGAGGTTTTCCGCAGCAAAACGATTCACAAGAACCTGAACCCAGTATGGGATGAGAAAGTCAGTCTGCTGGTGGAGAGTTTGAGAGAGCCACTCTACGTGAAGGTCTTCGACTATGACTTTGGACTGCAGGATGACTTCATGGGCTCTGCATATCTTTATTTAGAGTCCCTGGAGCACCAAAGGTCCTTGGATGTGACCCTTGACCTCAAGGACCCTCACTATCCCAACCATGACCTGGGTTCACTGGAACTGGCAGTCACACTTATTCCAAAAGAAGGAGACTTCAGGGAAGCAACCATGCTTATGAGAAGGAGCTGGAAACGATCCAGTAAGCATCAGAGTATGAGGTTATCAGACGTTCACAGAAAAGCTCAGCTGTGGAGAGGCATTGTTAGCATCAGTCTCATCGAGGCCCATGACCTCCAGCCTATGGACGCCAATGGCCTCAGTGACCCTTATGTCAAATTCAGAATGGGACatcaaaagtacaaaagtaaGAAAATACCAAAAACGCTAAACCCTCAGTGGAGAGAGCAGTTTGACTTCCACCTGTATGATGAACAGGGCGGTTTCATTGACATCACCATCTGGGACAAAGATGCAGGGAAGAAAGATGACTTTATGGGCAGGTGCCAGGTAGACCTCTCTCTTCTCTCAAAAGAGTGCACACACAGACTGGACCTGCCTCTGGAGGAGGGTGAGGGCACACTGGTGCTGCTGGTCACTCTCACAGCCTCTGCTGCCGTCTCCATCGCAGACCTGTCCGTCAACGTACTGGACGACCCCCATGAGAGGAAGGAGATTCTCCACAGATACAGTCTGTTCAGATcctttcacaatattaaagaCGTGGGCATGGTGCAGGTGAAGGTGATCCGAGCGGAGGGGCTGATGGCAGCTGATGTTACAGGCAAGAGTGACCCCTTCTGTGTAGTGGAGCTCAGCAACGATCGGTTACAGACGCACACCGTGTACAAAAACCTCAACCCAGAGTGGAACAAAGTCTTCACGTTCAATGTGAAAGACATCCACTCAGTCTTAGAGGTGACCGTCTTTGACGAAGACAGAGACCGAAGTGCCGACTTCTTGGGCAAAGTGGCTATTCCGTTGTTAAATATCCAAAATGGAGAACGCAAAGCTTACGCCTTGAAAAGCAAGGAACTGACAGGGCCAACCAAAGGGGTCATCTTTCTCGAAATAGACGTGATTTATAACGTTGTAAAAGCCGGCATGAGAACTTTGATTCCCATcgaacaaaaatacattgaagAGGAGCCACGAGTGTCCAAACAGCTGctgctgcagaacttcaacaGAGTGAGGCGCTGTATAATGTTCCTGATCAATGCTGGCTGCTATATCAACAGCTGCTTTGAGTGGGAGTCTCCTCAGAGGAGCATCTGTGCCTTTCTGCTTTTCGTTGTGGTCGTGTGGAATTTTGAGCTCTATATGGTCCCGCTGGTTCTCCTGATGCTGCTGGCCTGGAACTACGTTCTCATTGCTTCAGGGAAGGACACGAGACAGGGAGATGTGCAAGCTGTGGAGGATTTgctggaggacgaggaggaagaCTTTGACAGAGATGACAAGGTGCCGGGCTCAGTCCCCTCCCAGGATGGCCGGCTGCCGGAAAGCCATATCCTTGCGGATATTTTGGCTTCCTGGCACTTTGAGTGGATACGCGTGATGGTGGACTCAGAGAGAAAGGGTTTCATGAATAAGCTGTATGCCATTCAGgatgtgtgtatcagtgtgcaGAATGCTCTGGATGAAGTGGCCTCCTATGGTGAGAGGATAAAGAATACTTTCAACTGGACTGTGCCTTTCCTCAGCTGGCTGGCCATAGTGGCCCTGTGTGCAGCCACTTTTGTGGTGTACTTCATTCCTCTCAGATACATCGTACTGGCCTGGGGGGTGAACAAGTTCACCAAAAAACTGCGAGACCCGTACAGCATCGACAACAATGAGCTGTTGGACTTCTTGTCCCGAGTGCCCTCAGACGTTCAAGTGgTGCAGTACCGAGAGCTGAAAGTAGAGCCCAGTCACAGcccaaacaaaagaaagaaaaacaacccCGGATAACTCCTCTTCTCGCGCGGATGCTCTCCCAACGCCAAGGAGAAGGAGAGGACTGACTGGCACCCAgcctctttctgtctttcttcctcgctctttttctctctattttagCTGCAACGTGGAGAGTCAAAGAGCGCGGTCAGAGCGAAAACGGGACCGTTGTTAATTACCATCCGTCctttttttggggtttatttttGCGGCGGGGAGAGCGGGCGAAAGCTCTTGACCCCTTTTAGAGTCAAACAGTCTGGGTTATTTGTCAGCGCTTGCCACTAGGCAGACAGCTCTAAAAGCCAAGGTGTCCTTCCACGGCAGCAAACTGAGCCTCTCTAACCACAAATAGCAGGATCAGCTGATAATACGCCCACCTGTGCCGACACACCTCGCCTCTACAGAAGGGAAAACGACGGTGGTTAAGTTGCAGTTTGCACCCTATAATTTGCGCGGCGCAGTCACTGCCATATCTAAAGCTATCCGCAGCTGTTATCAGAGTCGACAGCTGAGCCTGTTACAGTCCGATTTACGGCTGTAACTAAAGTGCTCGTGGAAATGACTCCAAAAACGGCCAGTGCCAGTGAGGTCTGCGATATCTTCGATGTTCTTTTAACCGTATGAATGATGCATGCCGGGATTGTTTATTGTAAACCTTTTTCGACCAATAGTAGCCGTGGCAGCGTCAGCATTGTCCTCGTAGAGGGGATTAGGGAGTTTACGATCCCTTGCATCATTCCTTCTTCATCCCTCGCTCCTACTTCGCCAACAAAGATGTTGGTTACGGCCGACCACAATTTCTGGTTAGAAAGCAACTTTTTCTGTCAACTCTGCCTTACGTTGGGCGCCAGCTCCAATTTCGATCTCTAAAGGCCAAGTGCTGTTACACATTCAAAACCCGAGCGAAATCTTTCGAAAAATCCCAAACTTGAAGGGCGAATGTCTGTGTGCGTTTTCATCGCTGTGGATTGGCTGCTTGACAAGAAGTCGATAGCGTGTGACAGGCTGCTTCAGGGCCTCGGGGGGTACCGGAGGGCAGAGGTTTACTGACGCTGCCGTGGAGAAAAAGGAGGACGCGGGCTGCTTTCTCGGAGCTCCTCCTGTCATTCCgttttctctccctctgtcaTTTCCTCTTGTTCATCCAGCCGCTTGCGAGGGAGGTCATGGAGGGGTCTACGGGGCGCTCTTGAGGGACCTCGGGGTAGCCAGCGATGAAAGATCACAGCGCAGGCTACATCAGAAAGACGCTAGCTCCATCCCTTCGCCTCTCCCTCCTGACTTCTCATTTGCCATATCGCATCTATCATATGGAAAGACCATTGATTTGTCGGAGGGAATCCCATTACAAAGACGACGCAATCCCTACTGAGCAGGACAGGGACGATACTTCAGTGACTTGcgctatatataaaaaaacaacacaatgatGATTTGAACAGCAGAAAGGATAGTTTTCTAAGCCTGAATGTGTTTCTATGTACTGTACGTGTTGATTTAAGTTGTTCAGTGGGTTTATCGTGAATGGTTTTTGCATCCCAAAAGCTTTGTTTCGTATAAGTGCACATGCTATGTTTGCAAGCAAACCAAAGTggatcttttgtttttaaatgatatatatatatatatatatatatatgataaaagaGAGACCATTATGTAGAATGTATCTATTCGGTGGCAAGGGAATAAAGGCACTTTCATTTATAccagatttttaaattatttatttagcatcaactttttttgtaaatattcctAGAGTAAAAAGCAGAATACATGTGGTCAGAGAATATATGTGATGAGTTTATGAAACTGTAACGTGTCTGTGTGTCATTTTGAAACCTGTTGCCTGTGATGTCATACTGCGGCTGGCTGATGCACAGTTGGCAGATCTGTGACAAAAtccaaactaaaatatgaactaTGAATAATTTGTCATTacttttaaagatgttttgtttcttttttatataattattgctTGCGTTCATCAATAAAAAAACGAATCTCAAAGCATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55429 lncRNA downstream 287060 18373317 ~ 18391648 (-) True G37571
TU55428 lncRNA downstream 305458 18372208 ~ 18373250 (-) True G37570
TU55427 lncRNA downstream 307891 18370523 ~ 18370817 (-) True G37569
TU55419 lncRNA downstream 313241 18362413 ~ 18365467 (-) True G37565
TU55418 lncRNA downstream 317547 18353591 ~ 18361161 (-) True LOC122345727
TU55526 lncRNA upstream 7702 18813564 ~ 18813771 (-) True G37637
TU55695 lncRNA upstream 263052 19068914 ~ 19075774 (-) False G37757
TU55692 lncRNA upstream 264640 19070502 ~ 19075774 (-) True G37757
TU55715 lncRNA upstream 317163 19123025 ~ 19123308 (-) True G37774
TU55717 lncRNA upstream 326951 19132813 ~ 19133144 (-) True G37776
XM_043240810.1 mRNA downstream 30030 18535605 ~ 18648678 (-) False kiaa0825
XM_043240811.1 mRNA downstream 30030 18535605 ~ 18648678 (-) False kiaa0825
XM_043240809.1 mRNA downstream 30030 18535605 ~ 18648678 (-) True kiaa0825
XM_043240144.1 mRNA downstream 144201 18385973 ~ 18534507 (-) True fam172a
XM_043240145.1 mRNA downstream 144322 18385973 ~ 18534386 (-) False fam172a
XM_043240777.1 mRNA upstream 9216 18815078 ~ 18832513 (-) True ttc37
XM_043238780.1 mRNA upstream 63180 18869042 ~ 18877023 (-) False hmgcra
XM_043238778.1 mRNA upstream 63180 18869042 ~ 18877023 (-) True hmgcra
XM_043240124.1 mRNA upstream 115565 18921427 ~ 18932581 (-) True ccdc180
XM_043239796.1 mRNA upstream 126838 18932700 ~ 18937965 (-) False card9
TU54999 other downstream 1965541 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 1965541 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 2045587 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2300213 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 2421969 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1061524 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1061524 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1062952 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 1245797 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 1319727 20125589 ~ 20127390 (-) True G38140

Expression Profile