RNA id: XM_043240796.1


Basic Information

Item Value
RNA id XM_043240796.1
length 4131
RNA type mRNA
GC content 0.45
exon number 27
gene id si:ch211-102c2.8
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9816868 ~ 9829040 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGATGTATGAGActgttaattatataattggttttttatttgtaaaagtaGCTAAATGTAtcgatttaataaaaaaaaaagctctgcaCTGCgcacaaacaataataaatatcttcAAGTTTGTAGACGGTTAGTGGGAGTGTGTGGTTGCCTTGACACTGAAAGCTGTGAATGTGTACATGTCAAACAATTTTTGCTGTTCAGACGCGTTTCTTGAGAAAACTGCGAGTGGAAACACATTGACaaaaaacatggaaaatgaAAGATCTGGAGAAAACACTGACGAGCTGCTCTCTGTAGATGCGGATGAGGGGTTTGATGCTTACGGGCTTATTCCTCTGGCATTGTCCCATGATCGCTGTGATGTACTGCTGGACACCATAGACACGCAACTGAGTCAACTACAGATTCACAGCCAAACCCGAATGCATGGAGGAAACTCTAGGAGATATGAGTTACCTTTCTTGGGCTATCTCGATCGGAGTCAGTCTGTAAGCAAAGACACAGGCTTGGGAAGCACTGTTCCAACCAATGATAAAACACCATCCAACCTTGACGGGACTCAATCAGAAGGTAAAGATGACAAAACAGAGCATCAGACAATGAAGATGATAAAGTTTGGCGTCGCAGCTACAGATTTGTGGCGTCCTGAGGAAAGTGGCAGCTTGAGCTCTGTGTCCAGGGTAGAGCAGTGTTGTTGGAGACTAGAGAGGCTTCTTGGGAGAAATGCTGAGGTGGTAGAGATGGGAAACGAGGAGGACAGCGTCTGCACTGAGGACTTCTCAACACGCTTTAGAGAGGAAATGCTGGTCCAGCCAGCCTCAGTCACCACAGTCTTTACTGAGCCCCAGAGAAGTCCTCACCATGATAGATGTAGGAATGATTCCAAACATCCATGCAGTACACCTTTGAGGCACATCGCAGAaatcagtgttgattcagtcaCCATAGACACTGAACTGGACACAGTGTGCTCAGAACAGGTTCGACAGTACCTGAAGTCTGCAATTAGCAACAGGACAAGTACAGCCTTGCATCTAAGCGCAGAAAATGGATACTGTACCGGACTAACCAGCCATACTCAAAACAATCTTCAATCCTTCAGCTCTGATGATGAGAGAACTGTTGAGGAGACGAGTAGTGAAGCTGCTGTGTCAAAGCTTGActacagaagaagaagaagacaggCATCTGGAAGGAAGGGGAAAAGAAGACATTTCTACCGAAGCAAAAGGAATGATTCCCACATTAGCACAAAGAGAGATTATGACAAGAGCAGAGTAGATATAGATCAACTCAGTGAGCTGAGCTTGTCGCTTATTGAgcttcaacaacaaaaaacaGCCACACTTCATACTCTTAAGAAGCTGAGAGAGGAAATGGACGGAGCTAAGAGAGAGCATCTCTCTCTACAGCTCAGTGTGAGGGACAGCAGAACCCAGGCCCAAAACATCACGTATGAGCTACAAAAACTGCAGGCCCAGAGGAACATATGCTTGGAGGAGGTCAGGGTTCTGCGGGAGAAACAGTGTGTAAGCCGCAGTGTGTCTATTCTGGAGAGGGAGGAGATGGACAGGCTGCTGGATAATGCCAAATCTGAACTGTTTTCAGAACAGAGACGTTTCAGACACACACTGGACTCTGTGCAGGAGAGGCTAGATGAGGTGAATCAGGAGATGGAGCAGAGGGAGGAGGACTGCAGGGCTCTCCGACAGAAATGCACTGAGCTGGAGGAGCAGCTGGCTGATACGATCagagaaaaagaacaaataaaggAGTCGTTACAGAAAGATCTAGAGCAACAAGTCAAGCGCTTTGGAGTGCTGGAGAGAATCGTTGCCCAGAAAGAGCTGCTTTTGCAGGGGACTGAAGAAGCCAAGGACGCCCTTCTTCAGGAGCTCTGTTCACTAAGAGAGGAGCACAGCTTAAAACTGAGAGAAATACGGAGCAAGacaGTGCAAGAAATCGAACAGCTGACGTTAAAGTTAACCAAAAGCCACACAGAGGAGATTCAAAAGGTGAATCAGCAGGCGGATGAGTTGAGGTCAGCTTCTCTCCGTGAACAAGCTCAGACCCACAAACAGAGCCTGGACTCTTTACACAGCTGCATCCAGatgAAAGATGAGGAGATAAACCGACTAAAAGAGGCTCTAGAGCAGCATGAGGGGAGGATGAGGAGGCAAGCAGAGGAACTCAAAAGAGAAACTCAGGAAAAGATTCGAAAGGCTGTGAAACGAGAGGAAAGGAAGTGggaggaacagagagagaaggCTCTTGAAGAGCAGCGTGGGACTCTGGAGCAGCAAATAGAGGATGCAGTGAGGAGAGGGAAGACAGAAGTGGAGAAGGAGAGAAGGAACGCACTGGCTTTACAGAGTAAAGTGACTGAGCTTCAGAAAGAGTCAGAGAAGGAGGTGGTGCGTCTGAAGCAAACTTTGCAACGGTCTGAAAAAGAGCTTCAGGAGCTGAGAACAGCCCTCTCTGAGAAAGACCAAAAACACAAGAGAAGAACAGCCAGACTTGAGCAGCAGAGCAAACGCTGGGCGCAGGACATACACAGCGAATGTGTTTGCCTGCAGGAGTTACTTAAACACAGCGGCCTAGCTGCTGAAAACACAAACTCATCAGACAGTCCTACAGCGAGTGAAGCTCTTCAGAACCTCCAGTCCCTCACAAAGGTCCTACAACAGCATGTTAATGATCTAAAAAATGAGCTCAGCTCACAGAGACGTGCTGTACTGCAGCTCAGCCGTGAAAAGGAGCGAGAGCTTCATCTGCAAAAAAAGCAGCTGATGGAGGAAAAGCAACAAGCACTTGCTGCTCTTAAagagaaactcatacagGAGCACATTGAGGAAATGAGCAGCATATCTCGAGCACAGCTGCGCATGGACAATGATGATACAGATGAAGCGCGTGTCCGTCTGCGCAGGCAGCTGCGGGCTAAAGAGGACGAGCTCAGGCAGGTGCAGAACAACATGGCGCAGTGGAAAGACAAAACCGCTGCTAGACTCGCACACAAATTTGAGCTGGAGTTTAGCGCAGAGCTGGAGAGGAGGATCCCAAATCCAAGAGCGGAGCAACAGAAGAGATTGGAGAGACTGGAGAATGAGATGAGACATCTGACTGGGCAGTGCCAAGACTACAACGAATCCCAGTCAGCACCCACAGCTCTACAGGGTGACACAGAATTCCAAAACTCTCGAGTCACCCAAGACCTGACCTCATATAAACTGCTGCGGCACCTCCAGAGTCGCATTGTACAGCTTCGAGGAGAGAGTCAAACCCGCTGCCCCAGCCCGGTGAAGTGGGACAGGAATCCCACAGGCCTGGGTGGGTCTTATCTGGACACGATTGCTTCTGCCCAGGACAGCCATAAGAAAGAAGATCACTTTCCAGAGACCACcttcagttaacatttatttttaacactctGTAACCTAGAATTTTTTCCTAAACTGTTGATTTCATAGGAAACCATGTACAAGTACAAACaattattaaagggatagtatacacaaaaatgaaaatagtgtcattaattactcgccctcatgttgttccaaaccggTAAGACCTCTGTTCATCTTGAGCGCTCATTCATGACCCTGCATAGGCAGCAATGTTACTACCACGTTCAAGgaaatatacacagaaatatAGTGAGGACATTATTCAAATAGTCCATGtcacatcagtggttcaaccgtaattttatgaagctgcAAGAATACTTTTAgtgtacaaagaaaacaaaaaataacatctttATTCAACAACGAGAgtgaggatgagtaattaatgacagaaacttcatttttgggtgaactgtccctttaatacCACCTCTGCAGAGCATATGAATGAAGTTTATAGTTTGGACAGAAAGATCATCAAATAGGcctgttaaaaaacaaaatggataATTCTTGATCTTAGAATTGTGTTTGAGTTTACTGTGATATAAGGAACAGACGTAGTGTGTAGCAAACGGTATTTACAACTggtaatttaacttaatttttttaaggtgatttttaatgaattgttgTTGAACAACATAACttaaatcaaacaattaatgtatgaatgttttttttctgcatgaataaaatgtcaaaagcagAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51347 lncRNA downstream 38630 9777633 ~ 9778238 (-) True G34877
TU51341 lncRNA downstream 50261 9766268 ~ 9766607 (-) True G34871
TU51339 lncRNA downstream 52336 9764073 ~ 9764532 (-) True G34869
TU51125 lncRNA downstream 568827 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 756054 9013306 ~ 9060814 (-) True G34594
TU51619 lncRNA upstream 452370 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 508708 10337747 ~ 10341167 (-) True G35047
TU51725 lncRNA upstream 549727 10378766 ~ 10378998 (-) True G35107
TU51762 lncRNA upstream 683891 10512930 ~ 10513285 (-) True G35139
TU51766 lncRNA upstream 687632 10516671 ~ 10517342 (-) True G35142
XM_043239068.1 mRNA downstream 3738 9808869 ~ 9813130 (-) True tcn2
XM_043239067.1 mRNA downstream 8495 9798294 ~ 9808373 (-) True rabl6b
XM_043238424.1 mRNA downstream 20835 9792187 ~ 9796033 (-) True imp4
XM_043239701.1 mRNA downstream 25134 9780838 ~ 9791734 (-) False araf
XM_043240109.1 mRNA upstream 2960 9831999 ~ 9841079 (-) True tmem150aa
XM_043240807.1 mRNA upstream 14275 9843314 ~ 9861374 (-) False tango2
XM_043240806.1 mRNA upstream 14275 9843314 ~ 9861374 (-) True tango2
XM_043238611.1 mRNA upstream 199435 10028474 ~ 10034404 (-) True naaladl1
XM_043238205.1 mRNA upstream 213495 10042534 ~ 10046774 (-) True gtf2h2
TU51236 other downstream 414245 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 596361 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 886815 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1139150 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1385293 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 496076 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 632169 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1039325 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1094888 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1590916 11419955 ~ 11467122 (-) False hmgn7

Expression Profile