RNA id: XR_006251099.1


Basic Information

Item Value
RNA id XR_006251099.1
length 2983
RNA type transcript
GC content 0.47
exon number 23
gene id si:dkey-96l17.6
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10324959 ~ 10335343 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCCATTCAAGCAAACTAATCCCACCTGAAACCTCATCCACTGAGGTTAATATTTAACAAGCGTTGAGAGTTTGGTTCCTCACAAATACAAGCATCTTTCCAGTTTTTCTCTATTATGTTTGCCAGCCAGGTCTTCCTGCAACTAACCCCAGTCAAGAGTCATCCTGAATCCAGAGATACGAACACTCATCATGTATGTCAATTCCGGAGCAGAAAATGTGTCCATGTCTTTGAACTTCATGGGCAGGAAGTTACGTAACCATACTGTTGCCCCAGCAGCAAAACAACGTGCCTGGGAGACCACTGACCTTTCTCGATATCATGATGATCCAGTGGTCTCCACCCGAGTGGTACTTTCTCACCCCGTTGCGTCCTCAGAGGAACTGCCAGGCAGCGTTCCTGATCTGAGAGAAGAGGTCCAGTGGCGTAGACCATGCAACATCCATAATACACATCTAGACCAGGAGAAAGATAGAGGTGCAGCTAAATGTGAGGCCTCATGGCTGAGGAAAGGTAGACTCAAATGGAATACGTTTAAGCGCTGGATCGGCTCAGACCGGCACCATCGTCCAAAACGCATTGGAAAAGCACCCAATATGTCTTCTATGAGTGCAAGTGTAAGACATCCTGAAGATGAGGCTCCAGTGGATGTCAAGATGTTTATCCCATATGACTCTGCCAAGCTATGCATAACCCAAATAAGAGATGATATGATTGCAATGAAGAGCAGACATCAGGAGATGATTCAAGAACTTGAGGAGAACTTTCTCACAGCATCACAAGAGAATCAGGAAAAAACGGTTCTAAGAATGAGGAAGTATTATCAAAATAAGCTCAACACCCTGAAGAGAATCCTAGAAATTTACCAGGAAAAGGTGGCCAGAAAAAACTCATACTGGGAGGAGAAGGTCAAGACACTAGAGGATCTAAATGAAAAACTTGAGGGGCAACACAAACTGCTTCAGGAGAGAAACCAAAAGGATTTGGCTTCATGGGATCAAGAAAAGAACAAGATGATGGAATTGTTCTCCTCGCGACTGGACCTCCTTCACAACCACCAGGCATCAAcactgcagGAGCTGCATTTGGCCAGAGAAGAGATGGGGAAGGTCCAGGAGGTGCTTGAGGCCATTCAAGAGAAAAAAGAACCAGAAAATACATCTGAAGAAAAGGACAGCAGTGATGCAGATGTACCGCTAGATGGAGCTGAAGCTCGGCTGGAGATTTTGAAGGATAACCTCTtgaagagagagcgagagatctCAATCCTTATGGAAGGACAGGAGCGCGTGATAGATCCTGTGGAACAATCAGCATATGCTCACCTTCTCAGTGCTGTTATACAACAgGCTCATCGCGTTTACGCTGAGCTAACAGAGGCTAAACAGCAGTTTGACCAAATGGCAGAAGACAACCAGAAAATTCTGGTAGAGATTAAAGAAAATCTTGACCAAACTGTGGAagagtccagccagaagagccaCGAGGAACAAGAGGAGGCACAGCAGAAAATGGTGGAAGCACAAGTGGGGGATGGTTCACAGGCCAAATTACTCCATCATGAGGTCATGCAGGTGGCTCTAGAGTGCATCAGAGCAGGGGCTCAACCCACTGTCATTGAGACTGACACGACCGAGGCATGGAGAGCAGAGGTGGATGAAAGAGTCACGaaatttgaGGAGGATTACCGAAAGAATGGATTCTTAAATTCTGAAACTGATAAAAGTGTGGGGCAGCAACTGTTGTTACTGCAAGCTGAGTTGAAGCAAATCAAAGATGAAAACAAGAAGATTATTGAAAACTACACAACTGAAAGAACCTTGAGGAAAAAGTACTACAACATGGTGGAGGACATGAAAGGTAAAATCAGAGTATTTTGTCGAATAAGGCCACTGAGTCGTGCAGAACAGGCAAAAAAAGGTCACGCTATCATCGCTTGTCTTGATGACTACTCCGTGATCCTGGAGACTCCTCGAGGGCCTCGTGAGTTTCAGTTTGACAAGATCTTCAACCCAGAGTGCACACAGGAGGAGGTCTTCACGGAGTCCAGTGGGCTAATCCAGTGTGCGATCGATGGATTTAACGTATGCATTTTTGCGTATGGCCACACGGGTTCAGGGAAAACCTTCACAATGGTTGGAGACAGAGATCGAAGGAACCCGGGAATCATTCCAAGAACATTCACCAAGATCTTTGAGATCATTCAGGATAATGAGTCTAAATTTGAGTTTAAGGTTTCAGCCTACATGCTGGAGCTGTACAACGACCGCCTGCAGGATCTCTTTGTGAGCCCCGCTGAAGCTTTCAGCAAGCGAATCGAAATTAAGAGGGACAGGAAGGGGCTTGTGTTTGCCCAGGGAGCAGAGACAAAAGAGGCCACCAGCGCTGGCGAACTCTTTGCATTATTTGAGCAGGGCTGTGCAAACCGCCACATTGCAGCCACAAAGATGAATGTAGAGAGCTCCCGTTCTCACCTGATCATTGGCATCATGATTGAGAGCCGGAACCTGACCAATGGGAGCGTGAGTTTCGGGAAGCTCAGTCTGGTGGACCTGGCTGGAAGTGAACGAGCAGCAAAAACTGGTGCCAAAGATGACCAGCTGAAGGAGGCAAACTCTATTAACAAATCTCTGAGTGCCCTTGGAGATGTAATTTCAGCTCTGTCAATGGAGCAGCCTCATGTGCCCTATCGCAACAACAAGCTGACCCAGCTCATGCAGGACTCGCTGGGCGGCAATGCCAAGACCCTCATGTTCCTCAACATCTCTCCCTCTGACTGCAACCTGGACGAAACTCTCACCTCACTCATGTGAGAACTTAAAAAGTTAATGACAGCACAGTTTCACAGCTATGCAACTCGAGTGAAAGCCATCACCAACAATGCTCAGAGGAACGTAGACAGCAAGGAAATCGCTCAGCTGAAAGAGgtgattttaaaattgaaatcagGTCAGCCTGTGGAAGAAGACATGTAAACTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51619 lncRNA downstream 28974 10281409 ~ 10296141 (-) True G35035
TU51347 lncRNA downstream 546877 9777633 ~ 9778238 (-) True G34877
TU51341 lncRNA downstream 558508 9766268 ~ 9766607 (-) True G34871
TU51339 lncRNA downstream 560583 9764073 ~ 9764532 (-) True G34869
TU51125 lncRNA downstream 1077074 9246920 ~ 9248041 (-) True G34704
TU51637 lncRNA upstream 2405 10337747 ~ 10341167 (-) True G35047
TU51725 lncRNA upstream 43424 10378766 ~ 10378998 (-) True G35107
TU51762 lncRNA upstream 177588 10512930 ~ 10513285 (-) True G35139
TU51766 lncRNA upstream 181329 10516671 ~ 10517342 (-) True G35142
TU51777 lncRNA upstream 279406 10614748 ~ 10619422 (-) True G35152
XM_043240098.1 mRNA downstream 33243 10285762 ~ 10291872 (-) True zfand5a
XM_043239190.1 mRNA downstream 52275 10261589 ~ 10272840 (-) False abhd17b
XM_043239189.1 mRNA downstream 52276 10261589 ~ 10272839 (-) True abhd17b
XM_043239737.1 mRNA downstream 65030 10236253 ~ 10260085 (-) True cemip2
XM_043239649.1 mRNA downstream 98230 10120357 ~ 10226885 (-) False trpm3
XM_043238898.1 mRNA upstream 98357 10433699 ~ 10452821 (-) True trpm6
XM_043238903.1 mRNA upstream 117632 10452974 ~ 10455576 (-) True wu:fa19b12
XM_043238900.1 mRNA upstream 120386 10455728 ~ 10459212 (-) True carnmt1
XM_043238902.1 mRNA upstream 128010 10463352 ~ 10465388 (-) True LOC122345081
XM_043239819.1 mRNA upstream 189543 10524885 ~ 10527038 (-) True paxx
TU51236 other downstream 922492 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 1104608 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 1395062 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1647397 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1893540 8429700 ~ 8431575 (-) True timm8b
TU51745 other upstream 125866 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 533022 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 588585 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1084613 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 1128489 11463831 ~ 11467122 (-) True hmgn7

Expression Profile