RNA id: XM_043240832.1


Basic Information

Item Value
RNA id XM_043240832.1
length 2035
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC122346143
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10319660 ~ 10324635 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGAGGCGCGCAGCCATTTTCGGCCGCTGAAACTTTCTGTGGTATTTTATTGCGAACACTGAATCTGTCTAAGAGTGGCGCCTAAGCGTCTGCTATGTATGTTGAGGAGATCTCCCACACCACTGGAGTGACTTTGTTCCTCTGTGCCTTTGCTCTGCTTTTGCTGGTTGTTCATGGTCGATGGAGAGAACCAAGGTGCTCCTTGCCCCCGGGTCCCACACCTTGGCCTCTTGTGGGAAACCTTTTCCAGATGGGAGAACAGATCCATTTGTCATTAACAAACCTGAGGGTTCAGTACGGAGATGTGTTCCAGATGAAAATGGGTTCTCTTGTGGTGGTCGTTTTGAGCGGCTATTCTACCATCAAGGAGGCTTTGGTACGTCAAGGAGAGGCGTTTGCTGGACGTCCTGACTTCTTTACCTTCTCTGCTGTTGCTAATGGCACTAGCATGACGTTTAGTGAGAAGTATGGAGAAGCTTGGGTGCTTCACAAAAAGATCTGCAGAAATGCCCTGAAGACCTTCTCCCAAGCTGAGTCCAGAGACTCAAGTGCTTCTTGTCTTTTGGAGGAACGTATCTGTGCAGAGGCCATGGATATGGTGGAGACTCTGAAGGAACAAGGAGATGAGGTTGGAGATTTAGGGCTCGACCCGGTTAAGTTGCTAGTGACCTCGGTTGCCAATGTGGTTTGCACTCTTTGTTTTGGGAAGCGGTACGCCCATGACGATAAAGAGTTCCTCACCATCGTCGACATCAATAGCGAAGTGCTGCGCCTCTTTGCTGCGGGGAATCTGGCAGATTTTTTTCCCATCTTCCGTTACCTGCCGAGTCCATCTCTGCGAAAGCTGGTCCAGTGCATTCAAAGAATGAATAACTTCATGGAGCGCAACATCAGTGAACATCTCATCACCTTCGACAGgaattgtaTCCGGGACATCACTGATGCCCTAATAGCAATGTGTGAGGACAGGCAGGAGGAAGAAGAAACAGCAATGCTTAGCAACTCGCAGATCATCCACAGTGTCCTTGACATCTTCGGAGCCGGTTTTGACACGATCACCACCGGTTTGCAGTGGAGCCTTTTATATCTGATCAAgtttccagacatccaggccaaAATCCTTCAGGAGATAGAAAGCCAGGTTGGTATGAACAGGTTACCACAGTTTAAAGACAAGCCAAACATGCCGTACGCAGTAGCTTTCATATATGAAGTGTTTCGTCATGCATCCTATATGCCTTTCACCATACCTCACTGCACCACTGATAACATAACACTAAATGGATACTTCATTCCCAAAGACACATGCGTGTTCATCAACCAATATCAAGTCAATCATGACGTGGATATTTGGGCTGATGCTGAGGCTTTCCGACCTGAACGTTTCCTCACCGTGTCTggccatttaaacaaaaacctgACTGAGAAGGTAATGATATTTGGCATTGGAATACGCCGCTGCCTCGGTGACAGCTTTGCCCGTCTGGAGATGTTTTTGTTCTTAACCACCCTGCTCCATCAGCTGCACATAGAGAATGTTCCGGGGCAGGAGCTTGACCTGAGCTCTACATTTGCCCTCACCATGAAGCCCAGGCCCTTCCGAATAAAAATCTCAACTCGTAACTAAGCTGTATTTCAGATATTACATGTACACTAAATGGACCACGTATAAAATGCACCTCAGAACGGTTGCTACAAAGCTAATATTGGGCATCACTGAACTGCTAAGCTAATTAACCACTACAGTCTTCATTTCTTATGTGGTCTGTTCGGCTCAGCTGTTACTTGAATATTTGTTGTGTACTCTAAAGCATGCCCCGTCATTATTTCTGATAATACATGATAGCTAAGCTTCAGTTACTGCTTGTATTTTTAGCACAGATATTTGAAGTATGATGGTTTAAGATGTTAAAGTTGTTTCCGTGACATTGAAGGTTTAAAGAGGTATGCCTTTTGAAAAGGTGCTTtctgttaaatgtaaatattataaaatgtaaatattataaaattactatTAAATGTATTCTCAAATTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51492 lncRNA upstream 27824 10288424 ~ 10291861 (+) True G34959
TU51488 lncRNA upstream 32312 10285767 ~ 10287373 (+) True G34956
TU51490 lncRNA upstream 55244 10261612 ~ 10264441 (+) True G34957
TU51451 lncRNA upstream 179952 10064217 ~ 10139733 (+) False fam219ab
TU51629 lncRNA downstream 1231 10325866 ~ 10326714 (+) True G35040
TU51630 lncRNA downstream 2396 10327031 ~ 10327461 (+) True G35041
TU51631 lncRNA downstream 5254 10329889 ~ 10330322 (+) True G35042
TU51632 lncRNA downstream 8584 10333219 ~ 10333808 (+) True G35043
TU51689 lncRNA downstream 222586 10547221 ~ 10547625 (+) True G35081
XM_043240424.1 mRNA upstream 1081 10309609 ~ 10318604 (+) True tmc2b
XM_043240292.1 mRNA upstream 12992 10297132 ~ 10306693 (+) True tmc1
XM_043240753.1 mRNA upstream 37656 10276867 ~ 10282029 (+) True gda
XM_043239192.1 mRNA upstream 44488 10273023 ~ 10275197 (+) True c5h9orf85
XM_043238928.1 mRNA upstream 204900 10109186 ~ 10114785 (+) False fam219ab
XM_043240819.1 mRNA downstream 12588 10337223 ~ 10341120 (+) True anxa1a
XM_043240706.1 mRNA downstream 17562 10342197 ~ 10361067 (+) True mfsd3
XM_043240707.1 mRNA downstream 17581 10342216 ~ 10361067 (+) False mfsd3
XM_043238899.1 mRNA downstream 84000 10408635 ~ 10433693 (+) True rorb
XM_043239810.1 mRNA downstream 145041 10469676 ~ 10524790 (+) True abca2
TU51450 other upstream 201559 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 520327 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1448167 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2015534 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2309086 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 404483 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 602188 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 721845 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1599593 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1924503 12249138 ~ 12255672 (+) True G35720

Expression Profile