RNA id: XM_043240842.1


Basic Information

Item Value
RNA id XM_043240842.1
length 3615
RNA type mRNA
GC content 0.48
exon number 22
gene id si:dkey-13n15.2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12434336 ~ 12457053 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATAGCAACTGCAATTTGGGAGAGACGTATTCAATGCGCGCACAGGACTTTAAAAACGGTGTGCTTTTAGTACGGAAGACAGGGCCTTTGAAAATATCGAGATGTCGTGTTTATGATGTTTCGATGCGGTTTGAGGTTTCTACTTTCTGATCAGTGACGGAGCGGAAGACTGACATATTACAAATAGCGACTGAATTCTCCTAACATGAAGCGTCGAAtggtaaaaatgattttttttttcagttcgtggaattaaatacatttaaacggATCAAACGGAGCGCATTTATACCGGTGTGACGTGATGGACGATCATCTGATCACTGTTTGACAATTGAATTGGTCACAGAATGGAGGTTCCTGCAGTAAACCAGAGTTATACACATCCACCACCGCAGCCATGGGCCGGACAGAATCCCTGGAGCCCAACCGTGCTTCCACCCAGCTGTCCGCCTCCTTCATATCACTATCCAAACCTGAGCCCAGATCAGCAGAGTGTGACCCCGATGAGCCACACGACAGGAACCGCAGCAGGCCATCGGCCTCAGTCACTGTACTGGGACCCTTTACAGCAAAACTACCAGGGGGTCTTAAAGCCTGTTCCTGAGATCACAAATATGACGACTCAAGGAATGCCACAGAGAAGCTGCTCATTACCAACGAGTCCAGTGTCAAATTCTAAGACAGAGTCTCGGTACGGTCTGGATCCTCAGCTTCTACCCAGCGTGGTCCAAGTGATAAAAGAGGACAGGATCCAGTGGGAAGGGAAAGTATTTGTTTCAGAATCCAAATCTTCAGTTCCCCCTCTCTCCTCAACGCAGTGCACGCTGGAGGACAAAGGTACTGGCACACCTCGTTTCGTCCGCTGCACGTCCTACAGCTTCCCTGTGGAAGCTCAGTCAGCTCAGAAGAGTCATCTCCCACTGGGTGCTATCGTGTGTCCGCTGGCCAGGCCAGAAAATGGagaaCGTGATGTTCCAGTTTGTGAGGCGGGAGATTGTGTTAAGGGCTGTGTGCACTGCGGGGCCTTCATGAGCCCTGCTATGAGCTGGCAGGACTGCGGGCAAAGATTCTACTGCCCTTTCTGCGACAAACTCAATGAAGTGCCATGGCAGTCCTATCAGCCCACTAATCATGGTCATCGCGTGGACTGCGGAAAAAAACCTGAGCTCAGTCTCGGCTCGTATGAGATCCTGGAAAAACAAACGGGTAAAGCTGCTGTGTTGCTGTTAGCGATAGATGTGTCTGCCAGTGCGATGAGAACGAGGCAGTTAGACCGCATTTGCAAGCAGATTTGTTCTCAGTTGCAAGCTTTAAATGGGCCTGAAGAAACTATTAGATCAGATCTTCGAGTGGGTTTGATGACCTATGACAGCCGGATCCATCTGTATAACCTGAGTCCAGCTCTGTCCCGCCCTCACATGATGGTCATCACTGACTGTGAGGAGCTGGAACTTCCTGTGGTGGAGGGCCTTCTGGTGCCACTGAAAGACTGCAGACACATTCTTGAGAGGGTTCTACAGGAGATTTCGCTTTTCAACCCTGAATCGGATAGATCTGGCTCACATGAGCTTTCTGTTTCTGCAGGGCTGAAGATTCTTCAGGATGCAGCGTCTCCAGGCAAATTATTGATCTTTCATTCCTCACCTGTTTCTGAAGGCTCAAATCAGAAAAGCTCCTCTGGTCTCTTTAGCTCTAGCAAAGCGAAGTCCATCTTCCAAGGACCAGATTCTACGATCTCACTGGCTAAACAATGTGTCAATCACGGCTGCAGCGTGCACATTTTTGTGTTCTCCCATCAAGAAGTAGGCGGAGCTTGGCCAGGCCACATCCCCTATCTCACAGGGGGCGGTCTCATCTGCTATAATAGTCTGCAGTCGGAGATGGAACAGGAACGCTTCCGAGCTGATCTGAGCAGATGTGTAAATATGCAGATGGCCTTCAAAGTTCAGCTCAGAGTTTTTGTCAGTAAAGAGATGCGCATATCTGGTTGCTATGGCTCCTTCATCGCCGGTCCTGACTCCTGCTGTGTTGCCATGGCAGCGCTTGATTGGCGCACAGCTCTGGCATTTGAGTTCACTCACAACAAATCTTTGGATGAAACGAGGGGCGTAGCCATACAGTTTGCGCTGTCATACAGTAGCTCCTCCGGAGAGAACAGGACGAGGATACACACTGTTATTCTGTCTGCTTCCCGTCAACCACTAGACGCTTTTAGAAGCAGCCAGGCAGAGACCCTCCTCACATTCTACTGcaagaaaatgtaCACGTTGGCCCTGGAGAGTTCGCTGCAGTCCCTGCGTGAGGAGTTACAGACGGAGGTTACTGAGATGTTGGCTTGCTTCAGGAAACAAAGCTGCACTACCTCTGTGTCCCCAGGACAGCTGGTGCTGCCTCAGTTTCTGAAAGCCGTACCTGTCTACGTTAACAGTCTGCGCAAAAGCGAGGTGCTGCTGCCTGGGCTGCGGAGCTCTGTACATCAGCGTCTGCAGCTGCGTAGCCTCATTGTCTCCATGGACACGCTGAGCACAGCTTCTCAGTTCTACCCACTTATTCTGCCACTGTCTGTCTCTCCTGATAATGCCAACACGCCATCATTAGGGGAAGCCGTGCGCTGTACTGTCTCTAGTCTGGATCCAGGGGGTCTGTATCTGATCTCCTGCCCACTGGCACTGCTCCTTTGGGTGGGCAGCTGTGTGCCTCCTCACACTCTTCTCCAGCTTCTCAACACCAACTCCTTCTCCTACCTCACATCTGGAGAGATCAAACTTCCCGAGCTTGAGAACCCACTCTCCATCAGCACCAGAGCTCTCATACGCTCTCTGCAGTCCTCGGCAGCTGTTACTCTTCAGcTAAAACTGGTGCGGGAGGGTGACAGCTGTGAGGAGTCTCTACAGCGCCTCCTGGTGGAGGACAAGAGTCCTAACGGTGGAGCTTCCTACGCTGACTTCCTCTTTCACCTTCATGTCAATGCGTTGCGTCTTATTGTGTGACAGTGTCTTCTCGTAGACAAGGCTGTGGAATATTTGTCCTTCGTGATAGTCCAGTACCGATGCAGATGACCTTTTTTCTTCGATAGCCATTGCTTTCTGGATTTGCCATACATTTACctctgaaatatttacattttacaacttTAGTAAATGCAAATTCGATGTGACCAGCTTGTTTTAGGAGAAATGTTGAATACTAAGATTAGTCCTTTAATTTTCAAGGGCTCAGAATGACTGAATACTGTTTGAACTCCCATCAAAGACTCAGTGATTAATGATTCTCtatttgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatttgGTCCTAGACACGGTtttgattttaacatttgctCTTGTGTCATGAATATTGCACTCTGAATTGAATTCATGAATTTGGCCAGATGGCAGTGGAGTGCACGTTAATATTTTTCAAGCAATAATATATGCATTGAATTTTTGGTCTCATTGCATCTCAGTatttaatgtcttgttttttcaAAGGGCCATCATCAGCATGTGGACCTAACActttacagttttaatcatttaatcattttgtatgAAGAAAATACTTTTCTCTCCAATAATGAATAAACAACTGTAAATGTG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52651 lncRNA upstream 84967 12356438 ~ 12358798 (+) True G35756
TU52630 lncRNA upstream 156387 12285693 ~ 12287378 (+) True LOC122345282
XR_006250984.1 lncRNA upstream 158643 12284445 ~ 12285122 (+) True LOC122345281
TU52639 lncRNA upstream 160016 12279235 ~ 12283749 (+) False LOC122345282
XR_006250985.1 lncRNA upstream 163782 12278130 ~ 12279983 (+) False LOC122345282
TU52759 lncRNA downstream 79685 12536738 ~ 12544088 (+) True G35834
TU52820 lncRNA downstream 91613 12548666 ~ 12551180 (+) True G35855
TU52802 lncRNA downstream 110131 12567184 ~ 12672206 (+) True G35843
TU52838 lncRNA downstream 183214 12640267 ~ 12641645 (+) True G35864
XR_006251058.1 lncRNA downstream 188231 12645284 ~ 12647088 (+) True LOC122345920
XM_043239266.1 mRNA upstream 143584 12296255 ~ 12300181 (+) True LOC122345277
XM_043239262.1 mRNA upstream 172501 12265270 ~ 12271264 (+) True LOC122345271
XM_043238179.1 mRNA upstream 198337 12237734 ~ 12245428 (+) True LOC122344656
XM_043240056.1 mRNA upstream 278829 12037448 ~ 12164936 (+) True tenm1
XM_043240106.1 mRNA upstream 500655 11928604 ~ 11943110 (+) False smarca1
XM_043239999.1 mRNA downstream 858 12457911 ~ 12510008 (+) True camk2b1
XM_043240044.1 mRNA downstream 858 12457911 ~ 12510008 (+) False camk2b1
XM_043240046.1 mRNA downstream 858 12457911 ~ 12510008 (+) False camk2b1
XM_043240045.1 mRNA downstream 858 12457911 ~ 12510008 (+) False camk2b1
XM_043240009.1 mRNA downstream 858 12457911 ~ 12510008 (+) False camk2b1
TU52593 other upstream 188093 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 188093 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 501693 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1381451 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 1510602 10926823 ~ 10933163 (+) False senp3a
TU52818 other downstream 57023 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 246318 12703371 ~ 12705241 (+) False iscu
XR_006251084.1 other downstream 346899 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1527044 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1833367 14290420 ~ 14292500 (+) True G36495

Expression Profile