RNA id: XM_043240848.1


Basic Information

Item Value
RNA id XM_043240848.1
length 4766
RNA type mRNA
GC content 0.46
exon number 10
gene id kremen1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3753979 ~ 3809696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCACGGGGCAGGTTGAATCTATTGCCCCGATTTCCTGTCACATGGTTTGAAATAGGATCCCTAGTTTTTCTGCTATCTGTCTTGAGCGTGAGTGTCTGGGGGCAGCGCTGATCTGCCCAGAAAGTCGAGACGCTCTTAACGCAGACGCGCCGCGCGATTCGCCGACACTCGTCTTGCTCGCCGCACCAGACCGGACTCGGAACGCTTCACCTgcgaggagagagaggaagagaaggtGTCCAGATCCCTCACAGCCCGCCACGGAAGAGCGATGGACTCGTGGAGAGCCGCGGCTCTGCTCCTCGCCGCCTGTCTCGGCGCGTCGGCTTCGGAGCAGTTCCACACGGAGTGTTACACGGCGAACGGAGAGGACTACAGGGGTCGACAGAACCAGACGAGCCTGGAAGGAGGAAGACCGTGCCTCTTCTGGAACGAGACTTTCCAGCATCCGTACAACACCATCAAATACCCCAACGGAGAAGGAGGCCTTGGGCCGCACAACTTCTGCAGGAACCCAGACGGAGATGTTCGGCCGTGGTGTTATATCGCAGATCTCGAGGACGGAATCTACTGGAAATACTGTGATATCCCGAGCTGCCAAATGCCTGGTAACCTGGGCTGTTTTAAGGACAGCGGCGATCCAACACCTCTATCCGGAGGCTACCAGACCTCCAACAAGCTCACCATTCAGAACTGCATCAGCTTCTGCAGAAACCAAAGATACAAGCTCGCCGGTTTGGAATCAGGCTATGCTTGTTTCTGTGGCAACGACATCGATTACCATCGTCACGGTGACGCTCCGAGCACAGAGTGTAACCATGTGTGTTTTGGAGATCATACTCAGCCATGCGGAGGCGACGGACGGGTCATAGTCTTCGACACAAAAGTAGGCGCTTGCGGAGGAAACTACACGTCGCCCTCCGCAGTCATCTACTCTCCTGACTTCCCGGACAAATACAAATCTGGCAGGGTCTGCTACTGGACCATTCAGGTTCCAGGTGCTTCTGTCATTCTCTTCAACTTTACTTTCTTCAATATCGTGGATCAGACGGACATGGTGGAGCTGCTGAACGGTTACTCCAATCAGGTGCTGGCGCGGTTCGATGGGCGCAATCCACCGCGGGACATCGTGAACGTCACCGCGGACTTcgtcattttgtatttttactctGACCGGACGAATGAGGCGCAAGGATTTTCTGTTCTTTATCATGCTTTCAGAAATCAAGCCGTCACGCCTCTGGAGGAAGACGATGATGGCGATGAAGGGGACGGCAGCACGGTGCGGCCGAATGCGGGAAGCACCACCGCAAAATCGAACACCAGTCAGAACGGAAAGTCCTCCCTCCGGTACTATGTAATCACATCGAGTCCTGCAAACATGCCAGTGTGGACCATCTACGCATTAGCCGCTCTGCTAACGCTAACAGTCATAGCCATGGTGGCTAAGCTGCTCTTGCATCTTACTGTAAAATCCCCGTCCATCCCGACGATCAGCGGGGCGGATTCGTGCGCGCAGAGCACCGCGTCCGAACCCTGGATCATCTTCTACAGACCTTCCACCATCTCTCTGTTCAAGAAGAAACTCAAGAACCACCACGGAGACCTCAGCCCTCTCGTGGGGAACTAACCTCGCCGACCTCGGACCTCTACGGCTGCTTTAGCCCCTAAAGGATGCACACACTGTATGTAAGCAATgctggtcttctgctgctggaTCTGATCCACTCCTAATTCACTTCAAAGCGACCAGCGCAGGGCCCACAGCCCGATGGGTTGTTGGTAAGAAACTGCGCAAAAAGAGCTCGCGCTTGCTCTCGATTTGCATCGTAACCAATCACCGATCATGTGACAGGTGCACACATGCACCGAGCCATTTGATTAGCAAAAGAGTGCCGGGATGCTTCCGAAACGAATACGGATAGTCGTTTGTGTAGGCGCTTTCACAGAAGCGATCTGCCGATAACGTCCGCATTAGAGACTCTCGGCGGAGCGCACTGAAAGACAAAACCACTCACGTAACCAAAATAATGCCACGGTACCCAAGGAGATACCATTCTTTTTAACCTCTAATGTAGGTCACCTGTTGTTGAGGAGCACAGAGCTCCTTTCTTCAGATGTAAGAGAGCTGGCTGAACCGGCGGAGGATTGATGTCACAATCATGTCGAGAGCAATTCGGACTCAAACGAGACAgtctcgagagagagagagagagagagagagaggtggacgGAGTCTGAAATTGCTACGAGTTGGGCGATGTTCAAAACCGGCTGACATCCCCGCGGACCTCGCTTTCGTCTCTTGTCGTTTGTGTTGGGTTTTGATCTTTCCGCATTGCCTTTAAGTGCCTTCAGGActgaaacgaaaaaaaaaaatagaaactctTTTGTCTGTCTTCTAAGCTGTCACAACGTCTCGATGATGTAAACAAGCATTGATCCTTCGGAGCATTGAATTGCAAATGAGAATAAGCACTaaggatgtgtttttttttgttggtttttttattCTAGAGATAAATGTAGTCCTGTGGGTGTCATTGGGCTTATTGTTCTTGTCAGGTTTTCGACTTGAGCAAGAGAAGCATTGTGATGAACGTTGTGTAATTCTGTGTGGGAACAATCAAACGTCATCCCTTTTCATTTCGCTCTCCGACAGAGGCAGTGGTGAAATTCTTCCCAAAACAATTTGCTCTTTCTCCCCCTTCACCACAGCTCGAGCTTTCGCATTCTGAGGCACTTTTCCAGCCGGCGGAAAACCATGAGGATCACTGCACTGCTAGCTGCGAGGATTCGGGGCGCTTGCTAAAAACCGGAAAGGGCCAAAAAGACGGCATTTACTCCTGACGCGcttgaaatgcaaaataagatattttgaagaatggttAACTTTATCCACACACGTCAccgaaagagaaaaaaacaaacactgtgcCTCATtcatgaaatttttttttgtgtgtgtgcgtgtaagcTCATAAAACCGCTCTGACGCGTTCCCAAAAGTGcttgtattttcaaaatgttaattactaTAAAAAATCCTGCTCCCAAGCATgcataaaaaatgaacattagtTTCCAGCGTGTTAACGATGATTCCGGAAGACTTTACTAAATTAgttgtaaatgataaaaataagtgCTTTACAGACAAAGCGTAAGCCtagttctaaataaaataaaataacttgcactgactgatcttaaaacatgtcagctCCTATGTTTTGTCTTAAGAAGCTTGCTTAtatcctaattgaactatgccCTAATCCCTATGAAACCCGGccttatacaattaaaaattaaaacaaacataagcaCATGACAGCACTTcactttatgtataatgcatacaatgcatataaataataaatgcatgggGTAACAATTAATTGCTAAGTGCTGTAATGTATTAACTATGTttacaattattcatgagattgtactaaaatgacttttatattgcattatatataaaagctttaaGTGTTACCACACATTTATACAATAGAGAGAGTTATTAGTCTCTTATTGGTCTGattaaccaaaaacaaacctgGAATTGAATGAAATATTACGCAGACCCTTCATATTTGGTTTGGTAAAAGCTTTTATGCATGTTTGACTGAGGTTTTTTCTGCATTGACACCAGCAGGCGTCACCAGATTTCGTTTTTTCGAGCTCTGAAATCATTTTGAACCATCACTAGCTGACTtacatgttttactgtttatctGAGGTTTACAGTGCGTTTCTGAATTCTGTGTAGAGTTTATGGAAATGTCCATTTTGCATGCGAACGACCGTTTATGAACGAGGCCCATTGCAcactaaacagaaaaaaaagtgagtaaatgatgacagaaattgcAGTTCACAGCACTCAGACACAGGCCGACCGTTTTATATTCAGTTCTGGGTGTAGTACTTCACGTAGGTTTtagtaatattgcaaaaaaccttcatttaaaaggacattCACTTGCCGTGTTGGCGGGTACGTCAATAATGCCACACTTACTGTCCAAAGCGATTTAACATTAACTACATGATGCACTTTATCACTGAAGTACTTATCCTGCGTGATGTTTTATGCACGGCCAAAAGCATTATAAGTTTATATCTCAGATTGCATCGATATATCGCATATATCGAAACAAATCCGTATCAGTCGAGCCAATTCGAGCGCAAATACCTAGTTTTTCTTTCCTCAATCCGAACTCTTTTGTCTGTATTTTGGTCTGCGGCCTGTTAATTATTGCATACTCCTTCGTACCCTTAGCTCTGCGGTGCCCGCGGCTGCCCATGCATACTAAAGTGTCACCGGTCACAGAAAGAGGGAGACAAACCCAAAGTGACAGGTTAAATCTAACAAGGTCATATTCGTCTGGAAAGGCTGGTGAATAATGCAGAAACCAGGCGTCCATTTAGATCGCAAAGCTCAAATGCCATAGCACTTTTACCGGTGGAAAAAGTGTTATATCCTTCTGCGGTCTATCACCATGTCAGCGGGCTTTCCTTCGGAGAATCCGAGATAGGAATCCCTCCACTTTTTGCGAAAGGGTGCTTCCAGggattataaaaaaagatgttgttttcatttaattgtacataaaatagtgaaaattttaatttatgccataaattattgttattttggatgtaaaatGGGATATAATCTATCTTTTGTACAAGTAcctttgtagtttttatttaatgtgtcccgagtgcaaaaataaatatgcatgtttcTTA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48785 lncRNA downstream 4963 3744675 ~ 3749016 (-) True coq5
TU48784 lncRNA downstream 4963 3747616 ~ 3749016 (-) False coq5
TU48777 lncRNA downstream 101091 3648466 ~ 3652888 (-) True G33124
TU48765 lncRNA downstream 134925 3617937 ~ 3619054 (-) True G33114
TU48594 lncRNA downstream 363600 3388284 ~ 3390379 (-) True G33008
TU48808 lncRNA upstream 88895 3898591 ~ 3904546 (-) True G33140
XR_006250999.1 lncRNA upstream 158160 3967856 ~ 3968964 (-) True LOC122345413
XR_006250997.1 lncRNA upstream 241086 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA upstream 241219 4050915 ~ 4051469 (-) True LOC122345411
TU49028 lncRNA upstream 1050303 4859999 ~ 4902402 (-) True G33300
XM_043239950.1 mRNA downstream 1215 3747873 ~ 3752764 (-) False coq5
XM_043240173.1 mRNA downstream 91069 3659704 ~ 3662910 (-) True xbp1
XM_043239572.1 mRNA downstream 131575 3619178 ~ 3622404 (-) True si:dkey-1k23.3
XM_043238403.1 mRNA downstream 259786 3422884 ~ 3494193 (-) True taok3a
XM_043240533.1 mRNA downstream 336238 3403023 ~ 3417741 (-) False txnrd2.2
XM_043238280.1 mRNA upstream 12422 3822118 ~ 3847170 (-) True susd2
XM_043239162.1 mRNA upstream 39797 3849493 ~ 3873889 (-) True slc39a14
XM_043239160.1 mRNA upstream 39797 3849493 ~ 3873888 (-) False slc39a14
XM_043239161.1 mRNA upstream 39797 3849493 ~ 3873888 (-) False slc39a14
XM_043239163.1 mRNA upstream 39797 3849493 ~ 3866574 (-) False slc39a14
TU48454 other downstream 741160 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 793802 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1148064 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 1168553 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 1199833 2496504 ~ 2554146 (-) True G32857
TU48805 other upstream 75729 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 75854 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 335231 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 335231 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 335231 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile