RNA id: XM_043240855.1


Basic Information

Item Value
RNA id XM_043240855.1
length 2380
RNA type mRNA
GC content 0.48
exon number 13
gene id pou2f3
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23057205 ~ 23066572 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCTCAAGCTTTTCGAAGTTTGCTGTCTGCCTATTGTTGTTTTATGCAAAAAGTCAGAGTCTGGATAGGACGCACCGAGGGCCTTATGCAAATGACGTGTCTATCGGCTGGTGTGGGATACTGAAGAGGTGAATGCTCTTCCACTAACCCACTTTGCTAAATGTGTTTCTCTGAACCTTTTTGAGAAAGGTTCGCTCGGTTTGTCGTCGAAGACCTGAAGGGAAGCAGCACAGACCGATCCGCAGAGCCTGGATCCGTGAGGGCTTTCCCTGCTCTAAGATATTAAGATGAGCACAGAGGCTGTTGAGCAGACAGAATCTCAGCCTGAACAAGCTGACATTGAACAAAACGGCATTGACTTCACCAGACAAATTAAGACCGAGAACCTGAACGATTCGCCTCATTCTGGATCGTCACACAAGACATGTCACCTGACTCAGGGATCCCCGGTGCCTGGCGGCCAGCTTCCCGGGGAGCTGCCCTCCCTGCACCCTCTGCCCCAGCTGGTCCTGATGCCTGGATCTCACCTGTCCTCTCCTTCATCATTCCTCCTCTCACAGGCCCAGTCGGGACACCAAGCACTGCTGCAGCCCAATCTGCTCTCCTTACCCTCCCAGTCTCAGACGGGGCTCCTACCGCACCAGCCTGGCATCGCACTCACCCCTCAGGCAATGGGCAGGGCAGGTCTGGCCGGGTCCTCTATGGATGGACACCTGGACATGTCTCACTTACAGGTTCCTAAACATGTGGGATCACCTCAAGATGAACCCAATGACCTGGAGGAACTCGAGCAGTTCGCTAAAGCCTTCAAACAGAGACGCATCAAACTCGGCTTCACTCAAGGTGACGTGGGTCTGGCCATGGGAAAGCTGTATGGAAATGACTTCAGTCAGACTACCATCTCGCGCTTCGAGGCTCTTAATCTTAGCTTCAAAAACATGTGCAAGCTCAAGCCCTTGCTGGAGAAGTGGCTGAGTGACGCAGAAAACTCTCCATCTGACTCCATGACCAACCCCACCACCCTGCCTCCGCTTATGGAGGGATATGGAaggaagaggaaaaagagaacGAGCATCGAAACTAACATCAAACTCACGCTAGAGAAACGCTTTGTAGACAACCCAAAACCCAACTCTGAAGAGATCACACTCATCTCGGAGCAGCTATCCATGGAGAAGGAAGTGGTGCGGGTTTGGTTCTGCAACCGGCGGCAGAAGGAGAAGAGGATATTCTGCCCTGTCTCCACTTCACCCATGAAGTCGCACAACTACAACCCTCGTCTGcctTCAACTTCCCGCTCATTCAGTCCGCTCGCCGCTGGAGGTGTGTCATCGAGCTCCTCCCCCAGCAGTCCCAGCCGAGGCTCCTCCCCCAGCACTCTGTCCACTACATCCAGTCCACTGACCGCCCAGGGGGTCAACCAGGCGTTCAACACCCCAGGATCCTGGTATCGCTGGAACGCCACGTCATACCACCACTGAGCCCCTCTGAAGGCACCCGCTTCATTTCATAACTTACCAAACCAGAGAGAAACACTCCTTCTGTTATGTTTACAACCAGCACTAAACAAGGAGGCAGAACACAGGGAGCCACTATTCTGCTTCTCGCGGTCTTACGTTCAAAGGGCTTGTGAATAGAGCTTCACCGCTAATTACCGAAGGGATAAAGCACTAATATGCAACGGCACATTGTTTAGATATGCAATCTCGCTTTAAAAGAACATGAGAGACATGTTCGGCATTTTCAGCAGAGCTTTTAACGTGCATGAAAGCTCGTTTCACTTTCTGTGTAAAATCTCTGCGCCGATTTTGTTGGAGATGAAGGTTCAAATCGGGCTTTTTGCGCATCGATAACGCGGATGTGAAAAGCTGCACATAACCAAAGCAAaaccacagattttttttaatatctcgTTTACGTATTGCTTTATTAGAGACTTGTTTTTAATGATGTACTTTTGTGATGAAGTTTGCTGGTGTTCTTGAGCGCTATCGGCCCCCGCTCAAGACCGAGACTGGAACAGCTGGCCCCGATGTGTGTAGTAATGACTAAATTTAGTGGATTGGTCAACGGTTTACAGTTCTAAACATTTCTGCGTACACCTAGTTTTGTGTTTCTGAACATTTCTGAGGATTTCTGGCAGGGAAAACGTTTTATATGCCTTGTGTGGAATATGTGCAGTTCACACTATTTTTATGCAACATTGTCCAAAGCATTTGAAGTTCCTTGAGTTTCACGTTTTAGCttttatatatgattaataatattatctagattgtttgtttgtttgtttgtttgttcggttgttctttgcttttttaaaaaaatttgaataacaCTGTTGTATATTTCTGGTTCACTGTTTGACTGTTATTAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57350 lncRNA downstream 19736 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 180769 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 264153 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 264153 22791710 ~ 22793053 (-) False G38634
TU57041 lncRNA downstream 1015987 22038380 ~ 22041219 (-) False LOC122344815
TU57383 lncRNA upstream 60647 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 279017 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 291002 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 535664 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 600269 23666841 ~ 23669869 (-) True G38892
XM_043240859.1 mRNA downstream 781 23054946 ~ 23056425 (-) True zgc:194948
XM_043240857.1 mRNA downstream 2937 23050936 ~ 23054269 (-) False foxr1
XM_043240858.1 mRNA downstream 2938 23050936 ~ 23054268 (-) True foxr1
XM_043240445.1 mRNA downstream 7248 23045402 ~ 23049958 (-) False cenatac
XM_043238412.1 mRNA upstream 3538 23070110 ~ 23076394 (-) True oafb
XM_043238568.1 mRNA upstream 11984 23078556 ~ 23084925 (-) False pde9ab
XM_043238567.1 mRNA upstream 11984 23078556 ~ 23084925 (-) True pde9ab
XM_043239956.1 mRNA upstream 19723 23086295 ~ 23097259 (-) True slc37a2
XM_043238177.1 mRNA upstream 32268 23098840 ~ 23104975 (-) True ccdc15
XR_006251119.1 other downstream 1017172 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1097322 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1173184 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1173184 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1231101 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 535672 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 685308 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 820731 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1131133 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1521456 24588028 ~ 24594116 (-) False anapc2

Expression Profile