RNA id: XM_043240859.1



Basic Information


Item Value
RNA id XM_043240859.1
length 865
RNA type mRNA
GC content 0.46
exon number 5
gene id zgc:194948
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23054946 ~ 23056425 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGGCACCCGGACAAACTAGTTCTCAGTGCCCACTGATTGGCTCGATCATGCCGTTGGGTCCTGCTCGTCTGGTTTTAGATGTACTGTTACTCTGTTATCTCCCATCCCACACTTCTATCCCGAGCGCTCTGAGCTCCACACACAAGCTGGGCTGTACAAGACAACATGCTGGCTGTACTCTTCATTCTGGGGACGTTATTCCCCTTAAACTTTGCAGaaaTATCGATCAAACTGCTGGATACTAACGATGGTGTGTTTTCGGGTGCGTTCCCGAACTCGTTTCTGCTGAGTCTGCCTGACTGCGGTGTTTACGCGAACAGGAGCGCGACGCTGCTCTACGCCGAGGCGCCCTCCAGCCAAAGCCAAAATCAGTCTTTCGTCGTTCCGTCGTGTAATCCCAAACAGCTGGGGTTACTTCTGGAAGACCTCAAACAAGGAACAGAATACACCATGTGGTACCAAATCGCAAATGAAACGAGCAGTAAATTGACTGGGAAGACCATCAGTGTCGTTGATTACCAGCAGATAGACAGTGGTCTTAAAGCGCGCAGCGGAGCCATGGTGGTCATCACCGTCATCCTGTCTTTGGCTATGGTGATGCTCCTCGTGGGCCTCTTTATTAGCCTCTTCTTTTCCGGCTAGGCTGAAGACGATGCACCTCAACAGTGTAATTGATGTCTGTTTAATTGACAAAATAACACAGACACATTTCAGACACTTTCAGAGATGATTCACTTTTTTCTACACAAACTACAGCGTGACAGCGAGttacacaaatgtatatatttagcagcaatttcaaaattattttcactGCATTGTAACGGTGtactgcatttcaaataaatcatgtaacataaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57350 lncRNA downstream 17476 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 178509 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 261893 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 261893 22791710 ~ 22793053 (-) False G38634
TU57041 lncRNA downstream 1013727 22038380 ~ 22041219 (-) False LOC122344815
TU57383 lncRNA upstream 70794 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 289164 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 301149 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 545811 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 610416 23666841 ~ 23669869 (-) True G38892
XM_043240857.1 mRNA downstream 677 23050936 ~ 23054269 (-) False foxr1
XM_043240858.1 mRNA downstream 678 23050936 ~ 23054268 (-) True foxr1
XM_043240446.1 mRNA downstream 4988 23045402 ~ 23049958 (-) False cenatac
XM_043240445.1 mRNA downstream 4988 23045402 ~ 23049958 (-) False cenatac
XM_043240444.1 mRNA downstream 4988 23045402 ~ 23049958 (-) True cenatac
XM_043240856.1 mRNA upstream 780 23057205 ~ 23064475 (-) True pou2f3
XM_043240855.1 mRNA upstream 781 23057206 ~ 23066572 (-) False pou2f3
XM_043238412.1 mRNA upstream 13685 23070110 ~ 23076394 (-) True oafb
XM_043238568.1 mRNA upstream 22131 23078556 ~ 23084925 (-) False pde9ab
XM_043238567.1 mRNA upstream 22131 23078556 ~ 23084925 (-) True pde9ab
XR_006251119.1 other downstream 1014912 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1095062 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1170924 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1170924 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1228841 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 545819 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 695455 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 830878 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1141280 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1531603 24588028 ~ 24594116 (-) False anapc2

Expression Profile