RNA id: XM_043240861.1


Basic Information

Item Value
RNA id XM_043240861.1
length 1229
RNA type mRNA
GC content 0.47
exon number 3
gene id sdf2l1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1769436 ~ 1771792 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGACTTGTCATGATGCGATTGGTTAGAAAGCGTGTCAGCGTTTGAATGGGGCTCTCCGTATCCGTCTTTCTGTGATGTACATACACGAGCTGTAACAATGGGACCGTTGAGAGTTATATTCGTCTTTCTCGATGTGGTTTTATTGTGTCTGATGTTTGTCCGAAGCGGCGCTCGAGATCTGGACTCCAGCTACGTGACGTGCGGCTCTCTGGTCAAACTGATGAACACCCGGCACAGCGTCAGACTTCACTCGCATGATGTCAAATACGGATCAGGAAGTGGCCAGCAGTCAGTAACCGGAGTGGATTCGGCCGATGATGCCAATAGCTACTGGCGTATCCGTGGAAAACCAGACAAAGTCTGCCAGCGCGGGGAGCCCATTCGATGCGGACAGGCCATCCGAATCACGCACATGAAGACCGGACGCAACCTGCACTCGCACCACTTCAGCTCCCCCCTCTCTAACCACCAGGAAGTGAGTGCGTTTGGTGAAAACGGAGAAGGAGATGATTTAGACGTGTGGAGCGTGCAGTGCGGCGAAACGTACTGGGAACGGGAGGACACCGTGCGATTTAAACACGTCGCAACGGAGGTCTTCCTCAGCGTAACCGGAGAGCAGTAcggtcagccaatcagaggccaGCGTGAGGTCCATGGAATGCCTTCACCCAATCAGCATAACTACTGGAAGGTGATGGAGGGGGTCTTTATTCAGCCCAGCAGTGATCCAGTGCGCCACGACGAGCTctgatgatgatgctgatgcATTATCGTAACAAGCAACTGAGAACTTCGCTCACACGCTGTGAAACCCTCTCTATATTTAACCCTTCAGTTTCTATAAAGTTGTACTTATTGGTCAAATTTATGCGATGCGATTTTTGACACGCGTCACCTGCAAAAAGGTTTGATTGCTAAAGATtggattgtgtttgtttgtacataAGGGATTACAATTCCTTTAGGATTCTGGGCTTTAAAAAGGgagtattttgtattatttatattaggtTGGATTACTACTGGAACAAATGGCATTGTACTATTAAAGAGTGTTTTTTGCACACATGAAATCTTTCCGACGTGGGAAAATATCAAATGGttgtttctctttcattttaagtttaagttttccATGTTACTGTCATTTGCAAACGTGGTTTTCTCCTCGCGCGTCCTGATAGGTACATCATTTGGTGAAAgctaaaataaagcttttgaaaAAAGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48007 lncRNA downstream 2556 1766598 ~ 1766880 (-) True G32586
TU48004 lncRNA downstream 5788 1763275 ~ 1763648 (-) True G32583
TU48002 lncRNA downstream 6607 1762478 ~ 1762829 (-) True G32581
TU48000 lncRNA downstream 9579 1759644 ~ 1759857 (-) True G32579
TU47992 lncRNA downstream 102530 1666698 ~ 1666906 (-) True G32572
TU48023 lncRNA upstream 22712 1794504 ~ 1796557 (-) True G32596
TU48107 lncRNA upstream 77032 1848824 ~ 1882392 (-) True G32654
TU48110 lncRNA upstream 79436 1851228 ~ 1893075 (-) True G32656
TU48138 lncRNA upstream 194537 1966329 ~ 1966532 (-) True G32675
TU48147 lncRNA upstream 224484 1996276 ~ 1996736 (-) False G32681
XM_043238199.1 mRNA downstream 23740 1733099 ~ 1745696 (-) True top3b
XM_043240215.1 mRNA downstream 37299 1721233 ~ 1732137 (-) True ppm1f
XM_043240297.1 mRNA downstream 51535 1696432 ~ 1717901 (-) True mapk1
XM_043240298.1 mRNA downstream 75150 1673024 ~ 1694286 (-) False ypel1
XM_043239640.1 mRNA upstream 8373 1780165 ~ 1785389 (-) True ube2l3b
XM_043238324.1 mRNA upstream 121988 1893780 ~ 1898590 (-) True LOC122344761
XM_043238158.1 mRNA upstream 248304 2020096 ~ 2022922 (-) True LOC122344636
XM_043238500.1 mRNA upstream 280913 2052705 ~ 2058733 (-) True LOC122344882
XM_043240718.1 mRNA upstream 315993 2087785 ~ 2090156 (-) True LOC122346063
TU47988 other downstream 75462 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 415022 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 433249 1322296 ~ 1336187 (-) False castor1
XR_006251110.1 other downstream 433252 1312606 ~ 1336184 (-) False castor1
TU48139 other upstream 194845 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 194845 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 248316 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 724712 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 808756 2580548 ~ 2585426 (-) False snrnp27

Expression Profile