RNA id: XM_043240865.1


Basic Information

Item Value
RNA id XM_043240865.1
length 2032
RNA type mRNA
GC content 0.46
exon number 7
gene id rnf128a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11154539 ~ 11169552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTAGTTGCGTTACAAAAACACCTGTAGGCGCTCAGTAGGGAGCTATCGATTACTTGACTTTGCGGGACTACTTCTGGGTCATTTTAATAACCACATTTATTTCAAGCTTTGAACTTTGACCTGAACCGAAGGGATCAGCGGCGGGGTTGGTGTGCCGATCATGGGGCTTCTTGCGAGTCGGGATGTATTTTCGTGGCTGCTGGTGGCCTCTGTTTTTCAGGTGTCGAGTGTGTGTTTCGCGCAGGCCAGTTACCTGTGTACTGCATACCTGAACATTTCCTACTCGATCCCTGACAAAAACTTAACCACCTGGTTTCGAGAGGAGATGGGACTGTACGGACAAGACTCACCCAAAACTTCTGTTGTGGGGAACGTTTATTTAGCCGATCCGATTTTCGGCTGTGAAGAGGGCACCCTTTACCGGCAACCGAACGACTCGAGGGGCTGGATCGCCTTAATTCAGCGCGGTAACGGCTGCACGTTCACCGATAAAATTAACGTCGCGGCCATGAACGGAGCCGCAGCCGCTATAATATTCAACGACGATTTAGAAAATCGGGTCATTCAGATGTCCCACCCAGGCACGAGCATCGTCGCAGTCATGATTGGCAACTACCGTGGGATGGAGCTGGTCCAGCTGCTAGAGAAGGGCGTACCCGTTTCCATAGCAATAGAGGTCGGGAAGCAGCACGGTCCCTGGATGAGTCACTATTCGGTGTTTTTCGTCTCTGTCTCCTTCTTTATCGTTACTGCGGCGACTGTCGGATATTTCATCTTTTACTCGGCACGGAGATTGACCAGCCTCAGACAGCAGAACCGCAAACAGaaaaagctGAAAGCGGAAGCAAAGAAGGCAATTGGCCAGCTGCAGGTTCGCACACTGAGACAAGGGGATCAGGAGACTGGCCCTGATGCTGATGCCTGTGCAGTGTGTATTGACTTGTATAAACCAGGAGATGTACTATCAGTTCTTACATGCAAtcaTTTCTTCCATAAATCTTGCATAGAGCCGTGGCTGCTGGAGCACAGAACCTGCCCAATGTGCAAGTGTGACATTCTTAAAGCCCTTGGAGTTGAGATGGATGTTGAGGAGCAGCCACAGATTTCAGTGCCTGATTTCAGATCTTTTTCTACCTCTGAGGACCTGCAGAGCGAGACCGTGTCACAGACGCACAGTGAGACGGCATCCTCTGGATATGCGTCCATGCATGGAAACGAACACCTCAGTCCTGCTGAAGCTTCACAAAATGGTGTGCAAGAGGAGCAGTTGGATGTGTCGCCTCACTATGACAATCTTGCCTTCGAGGGTGACGTTGACAACCAGAGTGAAGTCAGGACCTGAgcagcacaaacaaacactgataAAATGCACTCACACACGAATGAGGGGTTTTGATTTGAGGACTTATCAAAGCACTGCTGAGCGCTTTTCTGATTAGTTTCTGACTAAGTGCCtataaattctctctctctctctctctctctctctctctctctctctctctctctctctgtgtgactTTGTGTCTGTGGGTGATCACAATGATTTCTGGGTCAATCAGAGgtcattttaattgtgtgtgtgtgtgtgtggttgatTCAGGGTATTATGATTTCTGATTCAGGGTTTGATTCCTACTGTGGTTGTGTTCTGGTTTTGAGACTCCCAGCGTCATCGTGATAAGCAGCTGtggagacacagagagagagagagatagagtgCTCCACCTGCTGTAAAACACTGGACTTAATGCATACTATACTTTTCCCCAGTTTTGTGgcttattaaattatattgttcCAGTTTTGATGGAAATTTTAAATTTCAGAAATATTGTGCCTTACACACACTTATGTATGTGTGCAAATGTATATCACTTGTTGCAATAGGCATAGATATAATATTGGTGGTTCTGAAGGAATGAGTTCtcttgattttaatatttaaataagggatgaaaatatttctttactCTTTCAAACGAATAGTACAGACAttaacattgtaaataaaatcttttatgaaata

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10629 RNF128, GRAIL; E3 ubiquitin-protein ligase RNF128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51912 lncRNA upstream 7297 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA upstream 7297 11137052 ~ 11147242 (+) True LOC122346180
TU51871 lncRNA upstream 135347 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 316172 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 338238 10813457 ~ 10816301 (+) True G35197
TU51930 lncRNA downstream 17702 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 34948 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 36764 11206316 ~ 11208454 (+) True G35274
TU51940 lncRNA downstream 36764 11206316 ~ 11209405 (+) False G35274
TU51957 lncRNA downstream 125155 11294707 ~ 11303431 (+) False gria3a
XM_043240867.1 mRNA upstream 4314 11136223 ~ 11150225 (+) False LOC122346180
XM_043240869.1 mRNA upstream 4314 11136223 ~ 11150225 (+) False LOC122346180
XM_043240868.1 mRNA upstream 4314 11137086 ~ 11150225 (+) False LOC122346180
XM_043240870.1 mRNA upstream 4314 11137087 ~ 11150225 (+) False LOC122346180
XM_043240866.1 mRNA upstream 18454 11127127 ~ 11136085 (+) True LOC122346179
XM_043239710.1 mRNA downstream 661 11170213 ~ 11186674 (+) True tbc1d8b
XM_043239711.1 mRNA downstream 662 11170214 ~ 11186674 (+) False tbc1d8b
XM_043239778.1 mRNA downstream 28659 11198211 ~ 11204226 (+) True mtmr2
XM_043239779.1 mRNA downstream 28659 11198211 ~ 11204226 (+) False mtmr2
XM_043240523.1 mRNA downstream 40824 11210376 ~ 11217745 (+) False fam76b
XR_006251083.1 other upstream 92225 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 221376 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 423487 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1036413 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1355181 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 754676 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1079586 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1079586 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1344524 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1533819 12703371 ~ 12705241 (+) False iscu

Expression Profile