RNA id: XM_043240871.1


Basic Information

Item Value
RNA id XM_043240871.1
length 2697
RNA type mRNA
GC content 0.57
exon number 18
gene id LOC122346182
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4350227 ~ 4370478 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATCCGAAGCGACCCCCCTTTCCGGGGCCCCCAGGGGTCACCCGCATGCCGTGGATGCCGTCTGCAGGAGATCAGGGGCCGTCGCCCGACCAGCCCTCATTGGGACGAGCCAGAGGTCTGGTTCTGCCTAAAGATGAACCTCTTCCCGGACGAAGTAGAGTACCTGGAGAAGTGCCTGTACGGTTTGGGAGCGCCATCACTGTAAGACAGCCTGCGGTGGGCGTTTCTAGAGGTGTGCGATTACCGACGGACGCCGGAGGTTTCGGAAGAGCCCGAGGGTTTCTGCTGCCCGGTTTTGGGATGGGCAGAGGGGCTCCTGTGGGGCCTGTGCCTACGCCGGACATCAAAAAAGCAGACGTACGGGAGAAGAGGCCTGTGCTGCAAACAGAGGTGACTCCAGCGATTGCTCAGATTGCGGCTCCTGGGCCGGGGTCATCGCTGATGTCCATGTTCAGGGGCCTGGGCATTGAACCGGGAAAGACATGGGGGAGAGGAGCCACGCCTGTTGGACGGGGGGCAGCAGGCGACTTGGGGACGGACGTCCAGTCGGCCGACCGCTCTGACTCGGAAAGGGAAGAATCGGGCTTAGAAGAATCCTTTAGtTTCCTGGGCAGAGGATTTGTTGGCGTTGGCCGAGCCGCGTTGCCTCATATAGGTGTAGGTCGTGGGCGATTGGCCCGTCGGGCCCCGTTTCTCCCGTTGCGGCCCCGGTCTCTGAAGAAGCACCGGTTCCTCCAGGAACGCCCCCGAAAGTTGAAGGAGCCTCTGCAGAAAACCGGAACAAAAGGCAGTCCTGTATCCATCGGGTCAAACTACATCCCCATCTGCTGCAAAAATGAAGCTGTGTTTCAGTACCATGTTACTTTCACGCCGAACATTGAGTCTCTGAGTATGCGCTTCGGTATGATGAAGGAGCACCGGTCTACGACGGGGGAGGTGGTGGCCTTTGATGGATCCATCCTCTATCTGCCGAAACGTCTTGAAGAGGTTGTTCATCTTAAAGCCGAGAGGAAAACCGACAATCAAGAGATCGACATTAAGATCCAGCTGACGAAGATTCTGCCGCCCAGCTCTGATCTGTGCATCCCGTTCTACAACGTGGTCCTAAGGAGAGTGATGAAATTACTGGGGCTGAAGCTGGTGGGCAGAAACCATTACGACCCCAACGCCGTTGTGATTCTCGGCAAACACAGGCTTCAGGTGTGGCCTGGATACTCCACCAGCATCAAGCACACCGATGGAGGCCTCTACCTCGTCGTGGACGTCTCGCATAAGGTGCTGCGAAACGACTCGGTGCTCGATGTCATGAATCTGATTTACCAGGGAAGCCGTGAGAGCTTTCAGACGAGTGCACGGCGGAGTTTGTGGGCTCGATCGCCATCACGCCGCTATAACAACCGCATTTCTACCGTGATCGACGACATCGAGTGGTCCAAGTCTCCCAAAGACACCTTCACCTTGGCTGATGGGACCGTCACCACGTTTGTGGATTACTACAGGAAGAACTATGGCATCGCCGTAAAGGAGCTGGACCAACCGCTGCTCATCCATCGTCCCAAAGAGAGGTCCAGACCTGGAGGAAAGGTCATGACGGGTGAAATCCTGCTGCTCCCGGAGCTCTCCTTCATGACCGGCATCCCCGAGAAGATGAGGAAGGACTTCAGAGCCATGAGGGTACAAATCAGATCTGACCGCACATCAACGTGGGGAGCCGAGCAGCACACCCGGAGCCTCAAGCAGCTGCTGCACAACATCAACAGCAGTAACGAAGCGCTCTCAGAGCTGGGTCGCTGGGGCCTCGGCGTCAGCCAGGAGATTCTAGTGACTCAAGGAAGAACTCTGCCCAACGAGACCATCTGCTTGCATTCAGCTTCTTTTATCAGTGACGCCTCCGGCGTAGACTGGTCCAGAGGTGGTTCGAGACCCCTCTATCAGCACCTTCTTCGGTTCTCCTGTATCTGTCTCCTGCTTGCTCTCGGTCAGGTTCCTCTGAACTGCTGGGCTGTTTTCTATCCCCGGCGGGCGACCGATCAGGCAGAGGAGCTGGTGACTACTTTTACTAAGGTGGCCGGACCAATGGGCATCAAAATTGAGCGGCCCATCCGCAGTGGAGCTCACGGGACGATCGTAACCGAGACCTTCATCAAGAGCATTCACTCTCAACTCACCAGCGAGGCTCTTATTCCCAGGTTATCAACGTTCGGACCATCTCTCAGCCAGAGGCAGAAGCTCCAGAGCATCGGCCGTCAGAAGATCCTTCTGCAGATTAACTGCAAGCTGGGAGGAGAGCTGTGGACGGGTGAACGCCTCCTCTGGGTTACCTTCCAGATGCCTCTACGAGGAGATAATCAGCAGCTTCAGGGTCTGTCTGCTGATGGCCCTGTGAAATACTACGCAGCCATTTCTCGCCGCCGGAGTAGACTACACTTCCCCGAGAAGATCGTCATCTATCGCGACGGCGTGTCTGACGGACAGCCCAAGACGGTGGAGCTTTACGATCCTCAGGTCCTGAAGTGCTTCGAGACCATCCCAACTACGATCCGGCTGGCTTTCATCGTGGTGCAGAAGAGGATCAGCACCACCCTGTACTCCTGCGGATCTGACCAGTTCGCACGCCCTCGCCGGAACCGTCCTGGACCACACCGCTACCAACAGAGACTGGTCGGTGTCCAAGAGCCGCTTCAGAGCGACTGA

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0030718 germ-line stem cell population maintenance biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0000966 RNA 5'-end processing biological_process
GO:0010991 negative regulation of SMAD protein complex assembly biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48755 lncRNA downstream 251854 3607467 ~ 4098373 (-) True G33109
XR_006250997.1 lncRNA downstream 298755 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 298758 4050915 ~ 4051469 (-) True LOC122345411
XR_006250999.1 lncRNA downstream 381263 3967856 ~ 3968964 (-) True LOC122345413
TU48808 lncRNA downstream 445681 3898591 ~ 3904546 (-) True G33140
TU49028 lncRNA upstream 489521 4859999 ~ 4902402 (-) True G33300
TU49044 lncRNA upstream 543403 4913881 ~ 4915751 (-) True G33310
TU49071 lncRNA upstream 654467 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 662085 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 663633 5034111 ~ 5053903 (-) True G33333
XM_043239521.1 mRNA downstream 30492 4287799 ~ 4319735 (-) True LOC122345409
XM_043240860.1 mRNA downstream 157404 4144856 ~ 4192823 (-) False LOC122346168
XM_043239522.1 mRNA downstream 208324 4137531 ~ 4141903 (-) True LOC122345410
XM_043240840.1 mRNA downstream 451649 3878650 ~ 3898578 (-) True piwil2
XM_043239161.1 mRNA downstream 476339 3849493 ~ 3873888 (-) False slc39a14
XM_043238426.1 mRNA upstream 86341 4456819 ~ 4462417 (-) False atad1a
XM_043238425.1 mRNA upstream 86341 4456819 ~ 4462417 (-) True atad1a
XM_043238166.1 mRNA upstream 117363 4487841 ~ 4557844 (-) False galnt9
XM_043238165.1 mRNA upstream 117363 4487841 ~ 4557843 (-) True galnt9
XM_043238167.1 mRNA upstream 117363 4487841 ~ 4522834 (-) False galnt9
TU48820 other downstream 157146 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 157146 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 157146 4144927 ~ 4193081 (-) False LOC122346168
TU48805 other downstream 455752 3885425 ~ 3894475 (-) False piwil2
TU48850 other upstream 252012 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 1060786 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 1585821 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 2453693 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 2552952 6923430 ~ 6943192 (-) True usp20

Expression Profile