RNA id: XM_043240875.1


Basic Information

Item Value
RNA id XM_043240875.1
length 3035
RNA type mRNA
GC content 0.46
exon number 17
gene id ythdc1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27575738 ~ 27589910 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACTGCGATGTGGGAGAAAGAGATCCGCCATTTTAGAGCAGACACAGCACTCACGGGACGCAAATCATTTAATGGTGTGTGAGATTTTCTAAAAGAACAGATAATTAATAGAGTTATTAACAACAaatctagagagagagagagagagagagagagaggagggccTTCAAAGTGCGTTTAAACCACGGGGGCTGAAGATGTCTGCCGACAGGAGAGATGACAAAGatggGGAACTGAATGTACTGGAAGACATTTTGACTGATGCTCCTGACCAGGATGATGAACTGTACAACCCTGAAAGTGAACACGATATTAATGAGAAAAAAGGGTCTAAAAGGAAGCATGAACGAGGAGACAGCCAGGATGCGAAGCGGATCAGAGCATCAGGACACACTACCAGACAGCCGTTAAAAAGAGCTGCCCCTTCTTCCGGGTCAAAAAAGACAAGCAGTCTCAGAGGAAGACACGCACCAGAAGACCTCTATGAAGACAGAAAGAACCATGCTGGAAGAGGCGGTGCATCTCGGGCCGATTTATCGAAAGGATATGGTGAAAAGGGCCTGTCCCGTagcagagactcccagagacgaatCAAGCCCCTTTTGCCTGAGCTGACAGAGAATTGTTGTTTTCAGAAGATGCGAAGGCCTAGTGAAGACAGTACAGGCAGGGCAAGTCACTCCTCCAGAGAGGAAGAGGCTCATTCAGAAGAATATGCAACTGGCAGCTCTGTGGCTTCCTCTGAGGGCAACTGCTCGGATGTTGAAGAGGAAGGAGCCATGCAGGAGGAAGGGGAAGAGAAggaagcagaagaagaagaggaagaggaggaggatgaagaagaagaggaaggggATGAAGAAGAGGAGTATGAACTGGAGGAGGAGGACCCACGGGAGGGAAATGAACAGAATGACTATGATACTCGCAGTGAAGCCAGTGATTCTCAGTCTGAGTCTGTGTCCTTCTCAGAGGGAGAGTCTGTGCATTCAGCCTCAGGCTCAGAGGCGTCAGATGAGGAAAGCAAAGCCAAGAAGCACGCTAGAGGGATATCACCAATCGTTTTTGATAGAAGTGGAAGTTCAGCCTCAGAATCCTATACAGGGTCTGAAAAGAAACACGAGAAACTGTCCTCTTCTGTCAGAGCTGTGAGGAAGGATCAAACCAGCAAGCTGAAGTATATCCTGAGAGAGGCCAGGTTTTTTCTAATTAAGAGCAACAATCATGAGAATGTTTCCCTGGCTAAAGCAAAGGGTGTTTGGTCCACTTTGCCTGTCAACGAGAAAAAACTTAATGCAGCTTTTCGCTCCGCTCGAAGTGTTGTGCTAATCTTTTCAGTTAGGGAGAGTGGAAAGTTTCAAGGTTTTGCTCGGCTTTCATCTGAATCTCATCATGGAGGTTCTCCCATTCACTGGGTTCTACCCGCAGGCATGAATGCCAAGATGCTTGGAGGAGTCTTCAAGATTGATTGGATTTGCAGGCGGGAATTACCTTTCACAAAAACGGCTCATCTCTCCAACCCATGGAATGAGCACAAGCCTGTGAAGATTGGACGTGATGGACAGGAGATTGAACCAGACTGCGGGACACAGCTGTGCATGCTCTTCCCACCTGATGAGAGCATAGACTTGTATCAAGTCATTCACAAAATGCGCCACAAGAGGAGGATGCACTCAGAGCCTCGATCTCGGGGCCGACTACCCCACAGAGAGCCCGTCCCTCGGGACATGGGAAGGCGTCGTCCAGAGGAATATGACATGCACAACCGGAAGAGGCCCAGGATTGATTACACGCCAGAATTTCCCCAGAGACCAGgtTTTATGCAAGACCCTCGCAATCCACCTGTGGACAGGCGCTTCTCTGGTGTTAGGAGAGATGTGTTTCTCAATGGATCCTACAATGACTATATGAGAGAATTCCACCACAACATTGGGCCTCCTCCACCATGGCAAGGAATGGCCCCATACCCTGGAATGGAGCATCCTCCCCAGCACCCATACTACCAGCATCATCCTCCTCCACCCCAGGCCCACCCTCCTTACTCTGGACACCATCCCATGCCCCACGATGCCCGCTTCAGGGAAAAGAGGCATGACTATGACATGCGAGTGGACGATTTCCTGAGACGAACGCAGGCCGTGGTGAGTGGACGCAGGAGCCGACCACGTGAGCGCGACCGTCAGAGAGAGCGCGACCGGCCACGGGACGGGCGGCGTGACCGAGAACGAGAGCGTGGCAGAGAACGCGATCGGGAAAGAGAGCGGATTCGAGACCGTGAGAGGGAGAAGGAGAGGGGCAGATACCGGAGATAGGGGAAGATTGTTTTAAacctatttttttccattttgtttttttctcccacttttcattttgtagatattgttagatttttttttttatatatatatatatatatacagttgaAGTTCATCATAAAGCTGAACTAAATCTTTCtgggcatttttaaaaaaaaaatgttttgtcaatcTCATGCCATTGTCCGCATCATGCATgcagtgcatttaaaattgaactgtgaaaaccaaaaagcatttttaccctcaattctttttttattttctgtttttaatcattGGTTCTGTAGCTGCTCCTGTAATTAAGGAGCTgcttctctgtttgtttttgtttcttcccCACTTTCAGATTGTGAGCCAGACTGTGAGTTCCTTAAATGGCTGTTGCAGTTTTTAGGTGTTTGCTTACTCTGCGCTTGTCTTTGTGATTTCtgttgtacatttaaataaggtCATAGGTGCCAGTATTCCAAGGCACCGCTAAAATATGACCGTTGTATCAAGTATGTTTCTATAGCTTTGTCTGCAGCTAGGCTTGTTTTTGTAGAGTTTTGATTCGGATGTGGGTAAATATTCCCATATTTGTTTCTTGTCCGATTAAAAGGATGTGTCATGAAGGTTTGTAAATTGACTTAAGCCATTTGTTGTTGGAGTATCTGTTGGATACTATATGGatacattttgtacaaaacaaaaaataaaagaaaatgaatcactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59121 lncRNA downstream 36411 27538940 ~ 27539327 (-) True G39936
TU59120 lncRNA downstream 36877 27538488 ~ 27538861 (-) True G39935
TU59046 lncRNA downstream 289544 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 308509 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 341576 27232658 ~ 27234162 (-) True G39872
TU59154 lncRNA upstream 60540 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 158550 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 305733 27895643 ~ 27895961 (-) True G40021
TU59307 lncRNA upstream 590298 28180208 ~ 28180575 (-) True G40057
TU59308 lncRNA upstream 590714 28180624 ~ 28180999 (-) True G40058
XM_043240901.1 mRNA downstream 30488 27542420 ~ 27545250 (-) False rilpl2
XM_043240900.1 mRNA downstream 30488 27542420 ~ 27545250 (-) True rilpl2
XM_043240899.1 mRNA downstream 50324 27522065 ~ 27525414 (-) True mob1a
XM_043240896.1 mRNA downstream 53699 27518765 ~ 27522039 (-) False dguok
XM_043240895.1 mRNA downstream 53699 27518765 ~ 27522039 (-) False dguok
XM_043238945.1 mRNA upstream 3683 27593593 ~ 27604409 (-) True LOC122345116
XM_043240880.1 mRNA upstream 15902 27605812 ~ 27615456 (-) False LOC122346185
XM_043240878.1 mRNA upstream 15902 27605812 ~ 27615374 (-) False LOC122346185
XM_043240879.1 mRNA upstream 15902 27605812 ~ 27610307 (-) True LOC122346185
XM_043238492.1 mRNA upstream 296131 27886041 ~ 27891340 (-) False LOC122344874
TU59072 other downstream 177018 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1464336 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1466168 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1474329 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1483742 26091926 ~ 26091996 (-) True trnag-gcc_61
TU59237 other upstream 299213 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 665918 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 1870675 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2027089 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2336475 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile