RNA id: XM_043240879.1


Basic Information

Item Value
RNA id XM_043240879.1
length 3134
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122346185
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27605812 ~ 27615456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cattgttattaaaaacacaataatgtgCAAATTCGAttagattattttaaagaaatagagTCCCAGTGTCCTTAAACAAGGACAAAGCATAACTTAtgaatactgtttttttcttcttctctatactatttttctttttcttctctaagAGACTAAAGCTTTTTACAGTGCactataaaagtagttttaatgtgttaattatgccttgtaatttacatttataatgcatccTATGAGTAATTATAGCTACAACTATAATGCATCTGTTCAATTTTACACCTTTAGAAAGTGAAGTAAATTTATTACAACACGTGATCTTATATTATTCCGCATTTTAACTTTAGCTACAAGTATACATGAAAAGATACAGTATTATGCGTTAGAGGGTGCTTTAAGAATAACTTTGTAAAGCGTTCTGCATAAAGActtaaagtgttaccttttaaTAACTCTGTAGTTATTTCCTCATTTGGAAAGTCACAAAACGctaacaaagatttttttgtccttGGCTACTTGtaattggaaatatttttaccaCTTAAAAAAGGGAGGTTTAATAAATACAGGCATTATAACCAGGGATGCACCGATAATCATCAGCCGATGTTTAATGCTCATTTTCTCTGTAAAGCCAGTTCTGTAATCAGCAGGTAAATTCAATCCAGTTCATCAGTGAACAACGGCTCTGTAGTAAACGTGGCTCAGTGTGAAATCATGCACTTGATGGACTTCACCGCCGATTAcagaaccggctttactgacaaCACGCAAACATAGAGGCCGATCATTATCGTGCATCTCAAATTATAACAGCATTGTTCTCGATAACATCTGCATATTTCTCTACGTACTCTGTAATGCAGCATGCGGTAGctattacaaaataaagcaataagaGTGAAAATTGCGAGCTTGATTTGAGGGAAAGTTTAAGTCAACAGTATGCATATCTTTTAACGAAAATGGCTTTATTCATTGAGGACAAAGTGCAACTGCCCTCCATAATGCAACACGACCTTTGCCCAAATCCTGTTTTGCACATAGTCTATACATTTGTAGTCAGTTCCCCAATCACACTGCACTTATTCAGGAGCAGTGATACTTCACCATGTTTTTCGGAACTTTGCTTGTGTTTGTACTGTTGTGTGGAGCAGAAACCGGTCGTGCTGGCAAGGTTTTGGTGTTGCCAGGCGAGTACAGTCACTGGCACAACATGCGTGCGATCATCGACGAGCTAGTGGATCGTAACCACAGCGTGACGGTTCTGGTCAGTTCTTCATCACCTACTGTACCACACGCGCGGAAGGAGCGCTTCGATTACAAAGTGTTTCAAGTGAACATGAAGAAAAACGAGGCCAATGCTGTGTGGAGTGACTTCATTAATTTGTGGATGAAGGACTCAGTCACCAAATATGAGCAAATCTCCTTGATCTGGCGAGTGATGACCAACTTTATGGTGCTCGCTGATGATATTTGCAAGGGCATGCTTCGCAATGAGGATCTTTTACACACACTGCGGGAATCTCATTATGATGTGCTTTTTTCTGATCCTATGATGCCATGCGCTGACTTGATGGCACAGACTCTGAATATCCCTCATGTCCTGTCATTGCGCTTGACATTTGCGTTTACCTTTGAGCGGCTTTGCGGTCAGATGCCTGCGCCTCCGTCCTACGTTCCTGCTGTCGCTTTGCATGACCACCTCACTGACCGTATGAGCTTCACAGAGAGAGTTGAAAACATGCTTCTCTACATCGTTCATACAACTATATTCCGAGTGAACATGAAactcacttttgatcaaatttacACTGAAATACAGGGAAAGCCCACGACAATGTGTGAGACTATGGGAAAAGCAGACATCTGGTTGATCAGAACTTACTGGGATTTTGAGTATCCACGCCCACTCCTGcctaattttaaatttgttgGAGGACTTCACTGCAAACCTGCCAAGCCCCTGCCAAAGGAAATGGAGGAGTTTGTTCAGAGCTCAGGAGATCACGGCTTCGTTGTGTTCTCATTGGGTTCCATGGTCGGCAACCTGACCATGGAAAGGGCAAACACTATTGCTTCTGCTCTTGGCCAGATCCCACAAAAGGTTGTTTGGCGGTATAGTGGGAAAACACCAGAAACTCTCGCCCCCAATACAAGAACCTATGACTGGATCCCACAGAATGATCTGCTTGGTCATCCAAAAACAAAGGCCTTCATCACCCATGGAGGGACAAATGGACTGTATGAGGCTATTTATCATGGTGTCCCAATGGTGGGTTTACCACTATTTGCTGACCAGCCTGATAACCTAATGCACATGAAAACCAAAGGAGCTGCTGTTGTTCTTGACATCAACAAAATGGAGTCCAAAGACCTAGTGGATGCTCTCAAGACTGTCTTACAAAATCCATCGTTCAAGGAGAGCATCATGAGACTGTCCAGAATCCATCATGATCAGCCAATGAAGCCTCTGGACCAGGCGGTTTACTGGATCGAGTTTGTGATGCGAAATAAAGGAGCTAAACATCTCCGAGTTCAGGCACATAATCTGAGTTGGTATCAGTACCACTGCCTGGATGTAGTAGCCTTCTTACTCTCACTTGTTGCACTGATCACATTCCTCTTCATTAAATCATGCTCTTTCCTTTTCCgtaaatgttttagaaagaGTCATCCTGATGCTAAAGTACAAAAGAGTAAAAAAGAGTGAATGTAAAGTAGGTTACAATAGAAGCATTGTCTGAAGTTACTGTGGTACTTGTCATTTTTACACGCATATGATGGCCAGTGTGCGTTCCAATCTGAATGCTCTTATTGAAATGAATACATGTGATTGTTAATAATTTTGTGCAGTGATTACATATAATGACAGATATGGAAAAAAACTTGAATATATTACTGTTGTAATTTAGTTGTAAACgaaatgtggttttaaaatCAGTGAGGGTATTCGCTGGgccatttatttactttaatgtctatttaaatagcaatatgTAAAATCTATAGCAAAATTAGATCTTGTTTAACTCTACCCAATGTACAAATATGGAATATTCTTAAAACTATATTGGGTTCCAAGTTCAGCAGATCAGTCAGAATCAGattttagataaatattttgcctgaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59121 lncRNA downstream 66485 27538940 ~ 27539327 (-) True G39936
TU59120 lncRNA downstream 66951 27538488 ~ 27538861 (-) True G39935
TU59046 lncRNA downstream 319618 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 338583 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 371650 27232658 ~ 27234162 (-) True G39872
TU59154 lncRNA upstream 40143 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 138153 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 285336 27895643 ~ 27895961 (-) True G40021
TU59307 lncRNA upstream 569901 28180208 ~ 28180575 (-) True G40057
TU59308 lncRNA upstream 570317 28180624 ~ 28180999 (-) True G40058
XM_043238945.1 mRNA downstream 1403 27593593 ~ 27604409 (-) True LOC122345116
XM_043240872.1 mRNA downstream 15903 27575738 ~ 27589909 (-) True ythdc1
XM_043238492.1 mRNA upstream 275734 27886041 ~ 27891340 (-) False LOC122344874
XM_043238482.1 mRNA upstream 299920 27910227 ~ 27914589 (-) False LOC122344872
XM_043238481.1 mRNA upstream 299920 27910227 ~ 27914589 (-) False LOC122344872
XM_043238474.1 mRNA upstream 299920 27910227 ~ 27914589 (-) False LOC122344872
XM_043238475.1 mRNA upstream 299920 27910227 ~ 27914464 (-) False LOC122344872
TU59072 other downstream 207092 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1494410 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1496242 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1504403 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1513816 26091926 ~ 26091996 (-) True trnag-gcc_61
TU59237 other upstream 278816 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 645521 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 1850278 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2006692 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2316078 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile