RNA id: XM_043240901.1


Basic Information

Item Value
RNA id XM_043240901.1
length 1460
RNA type mRNA
GC content 0.42
exon number 4
gene id rilpl2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27542420 ~ 27545250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGAAGTTGTCAGGTGATTTGCGAAAGCACTGGGACTCCCCGTATCTTGGAAATATATCCTTTTTCGTAAAGAGCGCTTGCAGAGCTCGTCTGGGATCAGAATGGAAGGCCGGCAGGACAGCACGCCCATGCGAGCCTTCGACAAGGACGTTCTGGAGATGACCGCTGAGGACGTTTATGACATTTCTTACGTGATCGGCAGGGATTTATTAAAAGTCAACACGGGCGGCCGGGAGTTTTCGGATTTGCAGTTCAAAATCGTCCGTGTGCTGGAGATGTTTGAGACCATGGTGAACAAGTACAACCTGTCGCTGGAGGAGCTGAGGATGGAGCTGGATAACATGAAGAGAGAAATGGAAAGAGTTGTGGCGGAGGGTTCGAGTGGGAATGTCGAAAATattGTAGGTCCAAACAAATTAGTCGTGGACTTAAAAGACCCAAACCGACCACGATTCACCATGCAGGAGTTAAAGGAGGTTCTGCAGGAGAGAAACAAACTTAAAGCCCAGCTGATGGTGACCCAAGAGGAACTACAGCTCTACAAGAGTGGAATCCTGGGATCTGAACAGAAGATGGTTGAAGTGAACCTGGAAACCTTTCCTCAGCCAGAACCTGCACCCTCCAGCATTACAGAGGAGCACAAAGAGAAGAGCACCATTCAGAAACTgtTCTCATTTCGACAAAAATAGTTCCAAGGATTTTGCACAAACTGAAACATTTGAGACAAGCAACCCTTTCAAACGGGGTGAGGATGAGATGGGAGGAAGTGGTCTTTTTAATCATTGTGGCTGGAAATGCTTTGCCTCGctcagtgtttttaattatgtacaGTTCTGTTCTTTGTTTATCGAGTGTGGATTCAAACACGAACGACAAGATATCAAAGTATCAGCTGTCCCTCTAAACACCTTCCTTCGCTAATATACATATGCAGTGtatttgaaacaatatttgGTTATGTAACTGTAATAAACATGGGAACGCTAGGAATTGAGGTACTTCAgctaaaacatgaaaaaggCTGCTGTATGAGGTTATGTGTAGTGCAGTAGATCTCATTGAAGTATATGAAGTGGTAAACTGGGCCATGTGAATGTAAAAATTAACTTGTATTGGCTCGCAGTATACATTGTAAATAAGACTGGTCAAATTTTATGACAGTAGAGTGAAGTATTTTTCTGCAATACTAGGTATAATGAAATGCTGTTCTGAGTACATGGGCTCTGTTGTTCGTCCTCAGATCACTGGAGTTAACTGGATTTAACATGCAGTTGCATAATATATCGTGAAATTGAATTTTAACTATATCTGGCCCTCTTAAGTTTTCCTCTTTTCTCGATCAACCTAACATTTGATCTTATGTGTTTGTTGCGGTTCTTTCTCCCAATTGTTTGCATTGAATGTTTCCAGtatcctttttttaatgtttgaaaggtaataaatatcttttgccacaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0003382 epithelial cell morphogenesis biological_process
GO:0005813 centrosome cellular_component
GO:0005829 cytosol cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59121 lncRNA downstream 3093 27538940 ~ 27539327 (-) True G39936
TU59120 lncRNA downstream 3559 27538488 ~ 27538861 (-) True G39935
TU59046 lncRNA downstream 256226 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 275191 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 308258 27232658 ~ 27234162 (-) True G39872
TU59154 lncRNA upstream 105200 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 203210 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 350393 27895643 ~ 27895961 (-) True G40021
TU59307 lncRNA upstream 634958 28180208 ~ 28180575 (-) True G40057
TU59308 lncRNA upstream 635374 28180624 ~ 28180999 (-) True G40058
XM_043240899.1 mRNA downstream 17006 27522065 ~ 27525414 (-) True mob1a
XM_043240896.1 mRNA downstream 20381 27518765 ~ 27522039 (-) False dguok
XM_043240895.1 mRNA downstream 20381 27518765 ~ 27522039 (-) False dguok
XM_043240897.1 mRNA downstream 20384 27518765 ~ 27522036 (-) True dguok
XM_043240888.1 mRNA downstream 27870 27510873 ~ 27514550 (-) False eif2b1
XM_043240875.1 mRNA upstream 30488 27575738 ~ 27589910 (-) False ythdc1
XM_043240874.1 mRNA upstream 30488 27575738 ~ 27589909 (-) False ythdc1
XM_043240872.1 mRNA upstream 30488 27575738 ~ 27589909 (-) True ythdc1
XM_043240873.1 mRNA upstream 30488 27575738 ~ 27589908 (-) False ythdc1
XM_043240876.1 mRNA upstream 30488 27575738 ~ 27589908 (-) False ythdc1
TU59072 other downstream 143700 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1431018 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1432850 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1441011 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1450424 26091926 ~ 26091996 (-) True trnag-gcc_61
TU59237 other upstream 343873 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 710578 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 1915335 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2071749 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2381135 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile