RNA id: XM_043240904.1


Basic Information

Item Value
RNA id XM_043240904.1
length 4237
RNA type mRNA
GC content 0.48
exon number 22
gene id git2a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5859279 ~ 5884164 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCGTCGCTGTGAACTCAAACGTGTGGTCTGGGAGGGCAGATGGCACTCTTCTGCGATCTGATGGGCTGCGGGCGAGCGTTTCCGTAGTGTAGCTTTTAATGCATCATGACAGAGGCTCCGCTGCCGACTCGCCTGTCCTAATTTCAAGCTAGACGAGACGTACATTATTTCACGCAGGGCAGGCAGCGCTGGCGCACGCACACTCCTCCGTATGCGCGTCCTCTTCTGGAATGAGATCCGCTTTCGGTGATAAAACGCTTCTAAACGGATTCGCTCGTCATGTCGAAGCGGTGCGCGCTTTAAATTTGTCCGTGGACGAAACGATACATGGTGATACCGACGCTCCCGGAGACAAGGATGTCGAAACGGCTGCGAAATAGCGAAGTTTGTGCGGACTGCAGCAGTTCGGATCCTCGCTGGGCGTCTGTGAACAGAGGAGTTCTGATATGTGACGGGTGCTGTGGCGTTCACCGCAGTCTGGGTCGCCACAACTCACAAGTGCGCCATTTGTCAAACACGCCCTGGCCACCCACCCAGCTACAGaTGGTTCAGACATTATACAACAATGGTGCTAATGCAATATGGGAGCACACTCTGCTGGACCCGTCATCCGTCACGAGCGGGAAACGCAAACCCAATCCTCAGGATAAAGTCCACCCTAACAAAACAGAGTTTATAAAATCAAAGTATCAAATGCTGGCTTTCGTGCATCGTTTACCCTGTCGAGATGATGACAGTACAGCATCTGCTGATCTAAGCAAGCAACTTCACTCCAGCGTTAGAACCGGCAATCTTGAGACCTGTTTGCGGTTACTGTCGCTTGGGGCTCAAGCCAACTACTTCCATCCGGAGAAAGGGAACCCGCTGCACATAGCGGCTAAAGCAGGCCAGGTATGTCAGGCTGAGCTTCTCTGTGTGTACGGGGCAGACCCTGGTGCTCCGGACTCCTGCGGCAAAACACCCATCCACTATGCAAGGCAAGCTGGCCATCAGGACCTGGCAGACAGACTGGTGGAAATACAGTACGAGCTCACAGACAGGCTGGCCTTCTATCTCTGTGGGCGGAAGCCTGACCACAAGAATGGACAGCATTTCATTATACCGCAGATGGCGGATAGAAACGTCAGTCTGGAGTTAACAGAGTTTGCAAAAGctgcaaaaagaaaactgcaGTCTCTCAGCGATCATTTGTTTGAGGAACTGGCGATGGACGTGTACGATGAAGTCGATCGAAGAGAGACCGATGCAGTTTGGCTGGCCACTCAGAACCACAGCACCTTGGTAACGGAGACGACAGTCGTGCCTTTCCTTCCTGTGAACCCGGAGTACTCGTCGACACGAAACCAGGGAAGGCAGAAGCTGGCGAGGTTTAACGCTCACGAATTTGCGACACTCGTGATCGATATCCTAAGCGATGCAAAGCGACGGCAGCAGGGGAACTCCGTCTCGAGTCCTAAAGACAACGTCGACGTCTTCTTCAAAAGCGCGGGCAGCCGTCACGGAAGTGAAAGCCAGGAAACCGACCAGCCGGATTATGACAGCGTGGCGTCCGATGAGGACACGGACACCGATTTACGAGTGGGAAAAGCAGACCGAGCTAAGAGCCTGGACTCTGATCTGTCCGACGGACCGGTTTCCGTGCAGGAGTTCCTGGAGGTGAAAAATGCGCTTTCGGCCTCGGAGGCCAAAATTCAGGAACTGATGAAGGCCAACAGCAATCTGAGCGAGGAGCTGAGAATGATGCAGAAAAAGCTGCAGTCTCTGCAAAGCGAGAACAGCTCTCTCAGGCGGCAGGTCTCCGCTCAGCAGCCCTATCAGGCCCCCGGCGGCCCTGACCACCCCAATCCCTCCAgtccctcttcctcttcctcctcttcctcctcctctgccCTGAAACGCCACCTCTCTGCACGGGCCAGCCGCCCCATGTCTATGTATGAAACCGGCTCTGGCCTGAAGCCTTTTCTCCCCAAGGGAGAGACCCCTTATCCCGAGGAGACCTTCCCCACCCTGCAACCCTTCCCGACCTATATGGGAAAAGGTGCGTTTGTGGCCGCCTCCTCTTCCCTCCCCTTCCTCCCCTCCTCATCCTCCCCGTCCTGTTTGCGAGATCCTCAGGGGCCCGGACGGAAGCGGCCGGAACCCTTGGCCTCGTCTCCATCCTCCTCGACTCCCATCCGTCCCTTGTCCCCTTACACCTGTTGTGCTCCACGCATCGGCGTGCATGAACGCTCCCTCCACCAACCCACCGGGGGCTGCTGTTTTCATCTGGGCTCCAAGTTCGACAAGCAGAGCAGCGTGTCCGATGGCGACTATGACAACACGGTTAACGAATCTGATCTGGACGACTCTGGCTTCGGCCGAAGATGTCGCCTGCGCAGCAGCGGCTGGATGGGAGAGAGCGGCTCTATACCCGAGCTGGACGATCACGAGTGTGAGCCCGACCCCAGCCTGCCCAGCACCGAAGACGTCATCCGGAAAACTGAGCAGATCACCAAGAACATCCAGGAGCTGCTGAGGGCTGCGCAGGAGAACAAGCATGAGAGCTTTACACCCTGCTCAGAAAGAATACATGTGGCTGTAAATGAAATGGCTGCCCTGTTCCCCAAGAGGCCGCGCTCCGAGACGGTGAGGAGCTCTTTGCGATTGTTAACGTCCAGCGCGAACCGGCTGCAGAGCGAGTGTAAGAAAGCGTCTCCTCTGGAGAGCAGCcccgcagcggacgtgcagctGGTCACTCAGCAGGTCATCCAGTGCGCTTATGACATCGCCAAAGCTGCCAAGCAACTCGTTACCATAACCACCAAAGAGAACAGCAACTGAGTCCCGCCTGTAATGCTACCCCGGTGTTATTTAATCGGTATTTATTAGGTACGTcgcagggtttttttgtttgtttgttttttcatttaagctgtatttgcatgtttttattttttaatttaaggtgtCCGTCGTCTGTGTCGTTCGGCTTGAAGCCATAAGATAAAGCCTGAGGTGCTCTCAAGGGTTTTGTAaggatgtgtgtatgtgtggacctgtgtgtgtttgactagATGGAGAAGGATTTGAGCGGAAAAGACTATTCTGCACTATTCTGACTAATTTTACCTCTTCATATTCAAACATttggtagatttttttttttttttttttttatgtcagttaaacataatgtgtaataataataaaaaaaaaatctattgtacAAAATGTTCTGTTGACGCGGTCAGGTAGGGCTAGTGTAGGTACAGAtacaataaacataattataaagATGTCAAATTAtctattaatgaaaaaaaacatcgtATTTCATTTATGTCCAAAGTGAATGCCCTTTTCTCTGTTGGATAAATCTGGTGGCTataatattcagatttacaGTGCGCATTGGGGTCGACCGATTATCGGTGTtgatattaagcatttttatggTTATCGAGTTTCAAAACCGATTTGCAgataaagttatttaaatgcatttaaagagagctttttttaaagcccttattattcttcattttcacatttatattcgTTTTTATGCCAGGTATGTATAAAATAcgggttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctaagcATCAGccctaaaaaaacacattggtTGACCTCTagtatgcataaaaaaagtgaggatgtatatatatatctatatctatatatatcggCATCAGCCCTAAAAACCCATTGGTTGACCTCTAGTATGCATAAAAAAGTGAAGAAATGTTAAGTAAACTTAAGCTTATATTGCATCAGTTACTTGGAggtcaaagtattttttttcaatatgctGCAGATGAACAATCTCCACCAGCAGATACTGATACTGTGTTTGTGATCATTTAAACGTTTTTTGGTTTGTGTAGATAGTTCCTCATATTGTGctttcatttcagtgttttcatttatttcctctCTACTTCTAGTCCAGCCCGATCAGGTTAGTGCAGCTCCAGCTCAGTGTTAAACCCCACCTCCTTCGAGTGTTCGTAGTCGTTTAGATGAACCTCCTTCCACTCGTTCACGTCATTGCTGTCCCTGTGGTTAAGAATAAAAcgtgttctttattttttaaaaacttaatttatccTTTTGAGCTTCGTTTGTTGCTCCAGGGTTTTTGTTCACTTCAGAAACTGAGCCATAATAAAGTGAAACGTAAAACA

Function

GO: NA

KEGG:

id description
K12487 GIT2; G protein-coupled receptor kinase interactor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49258 lncRNA downstream 174995 5679683 ~ 5684284 (-) True G33446
TU49238 lncRNA downstream 204515 5654080 ~ 5654764 (-) True G33434
TU49227 lncRNA downstream 238574 5618265 ~ 5620705 (-) True G33423
TU49226 lncRNA downstream 238574 5619617 ~ 5620705 (-) False G33423
TU49210 lncRNA downstream 257075 5601409 ~ 5602204 (-) True G33409
TU49417 lncRNA upstream 11964 5896128 ~ 5897353 (-) True G33533
TU49427 lncRNA upstream 61825 5945989 ~ 5946874 (-) True G33542
TU49429 lncRNA upstream 69112 5953276 ~ 5959213 (-) True G33544
TU49440 lncRNA upstream 85078 5969242 ~ 5982803 (-) False G33549
TU49443 lncRNA upstream 86584 5970748 ~ 5982803 (-) False G33549
XM_043240923.1 mRNA downstream 9640 5843678 ~ 5849639 (-) True gltpa
XM_043239673.1 mRNA downstream 16282 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA downstream 16284 5820352 ~ 5842995 (-) True trpv4
XM_043239675.1 mRNA downstream 16286 5820352 ~ 5842993 (-) False trpv4
XM_043238430.1 mRNA downstream 188150 5668793 ~ 5671129 (-) True mmab
XM_043238326.1 mRNA upstream 14731 5898895 ~ 5909991 (-) True slc6a4b
XM_043238540.1 mRNA upstream 202637 6086801 ~ 6089556 (-) True foxd1
XM_043239784.1 mRNA upstream 211993 6096157 ~ 6099701 (-) False ankra2
XM_043239783.1 mRNA upstream 211993 6096157 ~ 6099666 (-) True ankra2
XM_043239699.1 mRNA upstream 348102 6232266 ~ 6243818 (-) True enc1
XR_006251120.1 other downstream 427885 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1236221 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1666198 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 72135 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 940007 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1039266 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1046708 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1237558 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile