RNA id: XR_006251109.1


Basic Information

Item Value
RNA id XR_006251109.1
length 2282
RNA type transcript
GC content 0.43
exon number 13
gene id castor1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1312604 ~ 1336187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTAAACAACATTTCAGATGCACTTTTCAATTAGTTCTCGAATCGAGTTGCATCGGACGAGTCTCTCCCAGCAGCATGCCCAGTTCACGAGGATGAAGCGTTTTAGTAGCACAGGGGTATGTAACATCACATAGGCGGTTCTCGCGTTGCGTTATTTAGCCCGCGCTGCACAGAACACGTTTTCGCGGCGTCTTCCTGGAGGATTAGTAAACGATGGACCTGCACATCTTGGACCACAAATTACGGGTCACATCAATAAGCAAAACGGGACTCCAGCAGTACACACACCCCCTGATCAAACTGATATTTCTCAGAAACAGGACGAGatGCAAATTTTTCAGTCTCACAGAGACTCCGGAAAATTACACAGTTGTCCTCGATGAGGAGGGATTTAAAGTAGCTCCTCTTTCAACGCAAGAGCTCCAGCCGTCTGAACACTTACAGGTGGAGGGCTCCACTTGGCTCCCTCTCAATGTCGTCTCCAATGGCAACGCCTCCAGCAGCTCACAGGCCGTGGGCGTCACCAAGATCGCCAAATCTGTTATCGCTCCATTGGCTGAGCAGCATGTGTCCGTCTTCATGCTCTCCACCTATCAAACCGACTTTATTCTGGTGCGAGAGAAGGACCTGTCGGTGGTGGTGGAGACTCTGGTGGAGGAGTTTAATATTTTCAGAGAGGAGGGAGGAGAGTCGGTGCCTGTGCACAGTCAGGACGCCTGCGACAGCCTCCAGCGAAACGGTAGAGAGGTTCCACATGCAACAGTTCATCCGGTGCTGATTCCAGAGAATCAATTCTGTGTAATGAGCTTGGATCCGGACACACTGCCGGCGATCGCCACCACCCTCATAGACGTTCTGTTTTACTCTAACAGTCCTAAAGAGGGCGCCAGTGTTGATCAGGACATGGAGTGTATCAAGTTCTTCTCCTTTTCTCTGATTGATGGATACGTCTCTTTGGTGATGGACACAGAAGCACAGAGACAattcCCTGCTGATCTTCTCTTCACCAGCTCATCTGGTGAGCTCTGGAGGATGGTGAGAATAGGAGGGCAGCCTCTCGGCTTCGATGAATGTGGGATAGTCGCTCAGATCTCTCAGCCTCTCGCAGACAGCGatatatcagcatattataTTAGCACCTTCAGCTTTGATCATGCTCTGAAAAGCGGAAATGGTCCGATTTGACTGATCACGAGTGGCGGAGTGGTACCTGAAGCGGATATACAGCCGTTTTGACGTTTAAGACATTAGTATGCACCCATAGGCGTATAAAAGACAAGATTTGAGCATGAAAAGGCATTATGCTCTGAAGAGTTGCTCTTGCACACCGAGTAAAAAGAAACAgcacagtgatttttttttttaccatggaGCTAAAAACCGgacTTGTGATTTTCTGGACTTTAATGATGATTCAGGGGATGACATGCAGACCGACAAATGAGCATATATGTCCTTTTAAAAAACGCGTTCAAAGGACAAAGAGCGAAATGGAAAAGCTCCTGAAAGACTCCGTCTTAAATGTCGGAAAAAATGTTAAACCGTTGCCGGATATCCCAGAACTTCAGCTGAAAAATTTGTCCTGCGAAGAGAAAACTAGGAAAGCGCAGTGTGGAGTTGAATTTATGCAGGAGGCTGTTCAGCTGATACTTAAACACCAACTTGAGCAACACGATGACAACAAGCCCATTATTAAAGAGTTAAACACAACTTATCTTAATTTAGGGCACACCAAGGTCTGCGTTGCATCTCATATAGGCAATTGCACAAACGTAACGATGCCTAACTTCAAGTCTAATGAAACGTATCATAAACAACAGTGGTACGTCACCGTTTTTAAGAACGCTGTGGACTTTCTGGACGAGCTGGTAAAAATCCAAGATCATGCTCCGTGCAGACACCACAAACCCAAACATGCTTGACTCCCaagaaataatgcatttcatttgtcAGCCGCACTTATTGATATACGAAGGTTGGTCACTTCCTCTTAAAGCGGTTCTTTTATTACTAGATTTTACAAGATGTGctcatgttaatgttttatatttatttgtacaatttatatatttattttttatacacttTGCAAAATTTGgtatttttaggaaaaaaaattctatttaagatatttatattattgtcacTTCATCCATGTTGTTctgtattgtaatttattacaattaaatgcatgttatttataatcattttttcagtattttgatATGccgtttcattatttttaaaatgctgccaacatatttaacattacaaatagtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47774 lncRNA downstream 20843 1289278 ~ 1291763 (-) True G32409
TU47599 lncRNA downstream 260427 1051867 ~ 1052179 (-) True G32292
TU47582 lncRNA downstream 433464 877910 ~ 879142 (-) True G32275
TU47578 lncRNA downstream 489777 820615 ~ 822829 (-) False LOC122344906
XR_006250945.1 lncRNA downstream 490142 820190 ~ 822464 (-) True LOC122344906
TU47832 lncRNA upstream 176861 1513045 ~ 1513312 (-) True G32440
TU47864 lncRNA upstream 201214 1537398 ~ 1539368 (-) True G32463
TU47861 lncRNA upstream 205042 1541226 ~ 1567149 (-) True G32462
TU47888 lncRNA upstream 270241 1606425 ~ 1607747 (-) True G32486
TU47992 lncRNA upstream 330514 1666698 ~ 1666906 (-) True G32572
XM_043240910.1 mRNA downstream 5069 1291831 ~ 1307537 (-) False rnft2
XM_043240911.1 mRNA downstream 6235 1291831 ~ 1306371 (-) False rnft2
XM_043240913.1 mRNA downstream 6236 1291831 ~ 1306370 (-) True rnft2
XM_043240912.1 mRNA downstream 7014 1291831 ~ 1305592 (-) False rnft2
XM_043239926.1 mRNA downstream 24608 1271898 ~ 1287998 (-) False fbxw8
XM_043240771.1 mRNA upstream 979 1337163 ~ 1342053 (-) False nipsnap1
XM_043240770.1 mRNA upstream 979 1337163 ~ 1342044 (-) True nipsnap1
XM_043238444.1 mRNA upstream 6422 1342606 ~ 1354414 (-) True lrrc74b
XM_043238443.1 mRNA upstream 6426 1342610 ~ 1354414 (-) False lrrc74b
XM_043240453.1 mRNA upstream 19175 1355359 ~ 1403122 (-) True nos1
TU47390 other downstream 1062851 246943 ~ 249755 (-) False rictora
TU47359 other downstream 1276258 35777 ~ 36348 (-) True G32104
TU47358 other downstream 1277889 33779 ~ 34717 (-) True G32103
TU47356 other downstream 1288657 20139 ~ 23949 (-) True G32101
XR_006250937.1 other upstream 6422 1342606 ~ 1354414 (-) False lrrc74b
TU47988 other upstream 338306 1674490 ~ 1693974 (-) False ypel1
TU48139 other upstream 630453 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 630453 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 683924 2020108 ~ 2022894 (-) False LOC122344636

Expression Profile