RNA id: XM_043240919.1


Basic Information

Item Value
RNA id XM_043240919.1
length 1882
RNA type mRNA
GC content 0.46
exon number 5
gene id lmo4a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7090165 ~ 7102731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTCATGTGTAATTTCAGCGTAAACTGGTGCCAGAAACAAGACTTCGCGGCTCTTATGAGGGTTTTAGACACCGGGTCACGAGAAAGCGAGTTACGGGTTCCAGTTTTAGGAAAGCGGCGGAAAGGTCACGTGCAGAGCTCAACGTTAATTTGACGGTTGCGGCGGAGCGCTCCTGACGAGAGGGACGGTTTTGAAGTTCGCTGGAAGCACGCGACACTCggattaccaaaaaaaaaagcgcatttTCTTCAACGGTTTTTGGGTGGACGAAAACAAAATCCACACATAAAGACAGCTCGCTTTTAACCGCTAAATACCGCGCAGTAACTTTGAGGGTCATCCCGCCACCTTTTGACTTCTTTCCAGACTCCGTGCAGATAACGGCAGGCGATGGTGAACAGCCGCGTGGAAACGGCCGCCGTTGCGGTAACGGGAGGCAGCGGCGGGGCAGTGCGCTCCTGTGCAGGCTGCGGAGGTCGGATCTCAGATCGCTTCCTGCTCTTCTCCATGGATCGGTACTGGCACACGCGCTGCCTCAAGTGCTCCTGCTGCCAGGCTCAGCTGGGAGAGATCGGCAGCACCTGCTTCAGCAAAGGAGGAATGATCCTCTGCAAGAACGATTACATCAGGTTGTTTGGTCACAGCGGAGCTTGCAGTGCATGTGGACAGTCTATCCCTGCCAGTGAGATGGTGATGAGGGCCCAGGGTAACGTCTATCATCTAAAGTGTTTCACCTGTGCCACGTGTCGAAATCGCTTGGTGCCTGGTGACCGATTTCACTACGTCAACGGCACCATCTTTTGTGAACACGACCGACCAGGTGGAGCTTTGCTCAGTAGTCACCTGACCCCCCTGCAGAGCAACACCCTCCTACCCGACCAAAAGGTGTGCTGAGAAAACATGGATTTATAATTTGCGGCGTGCCTTCTCTTCGTACTTTTCCTCACATCTTCCCTTCAATCTATCATTGTGAATGTCCACCCACACCCAAGACTTCCGCTTTACTTTCGTGCATCCAGCCACCTTAGAAGAAGAATTCAGAACTACGTACTGTGTACTGTGGGTCACTCGTGAGACAATCACCCCTGACGAGAGAAACCTATTCAAATtgaagaaatgtgaaaatgatcACTCGTATGTGGTCCATGTGGTTATGGCTGGGATGGTCTGACCCTAAAAGCCTTAGACTCTATTACAGAGCAGCTCGTTAAAGCCGGGGTGATTTTGTTCACTTTTGAGAAGTTTCTCAAGACGCTACCTGACATTTTGGACTGCATGGGTGTATGGATTATGAGcgatatcacaaaaaaaacacctataGATCAAATGACTGTTAAAActtagttttgttttcatgGTGGTTGCCTTTTGCTTACAGGCCCTATTCACTTTACGTGTAatcttttttgaaaacattgtcATCTTTGGTgcctaaaaacatttttatgtccagtttttttctcctttgtcATTTACTTCTTATTAGcaagtaaatataaacatgcacagTACAGACAGTGAAGATGTATTGTTTTGTCTACTCGAGTTTATGATGTATGAAGTGCTCTTTTTGAAAGAGTCATAGTCTCCAGAGgaaacagcatgtttttttggggggtttttttttccatggttTGGTAGAATAAATTATATGTCTGTATGCATATTCTCTAATAGAGACTGCTATTCAGTGTCTGCCAAGACTTTTGGGAGAGTGAGGGAGATGGAGAGTAAAATTGTACATATTCCATGTGCTGTTGTATCGTGTTGAATGGTTGACCTGTTTTCCTTTGTGTCCTCCGTTTAAACGGAGGaacgttaaaaaaataagatatctgtaaaagaaaaaagtacttAATTAAATAACTATAATCATCACA

Function

GO:

id name namespace
GO:0031076 embryonic camera-type eye development biological_process
GO:0030900 forebrain development biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49823 lncRNA downstream 38841 7050977 ~ 7051324 (-) True G33816
TU49781 lncRNA downstream 90781 6998360 ~ 6999384 (-) True G33788
TU49818 lncRNA downstream 101393 6988026 ~ 6988772 (-) True G33811
TU49817 lncRNA downstream 103946 6986000 ~ 6986219 (-) True G33810
TU49816 lncRNA downstream 106292 6982426 ~ 6983873 (-) True G33809
TU50023 lncRNA upstream 91247 7193976 ~ 7194213 (-) True G33947
TU50064 lncRNA upstream 231685 7334414 ~ 7336545 (-) True G33985
TU50073 lncRNA upstream 263521 7366250 ~ 7395232 (-) True G33990
XR_006251018.1 lncRNA upstream 347648 7450377 ~ 7460111 (-) False LOC122345654
XR_006251019.1 lncRNA upstream 347648 7450377 ~ 7460111 (-) True LOC122345654
XM_043238577.1 mRNA downstream 47568 7019527 ~ 7042597 (-) True LOC122344928
XM_043239747.1 mRNA downstream 135383 6952410 ~ 6954782 (-) True LOC122345529
XM_043239748.1 mRNA downstream 135393 6952410 ~ 6954772 (-) False LOC122345529
XM_043239751.1 mRNA downstream 140850 6945514 ~ 6949315 (-) False med22
XM_043239753.1 mRNA downstream 140852 6946780 ~ 6949313 (-) True med22
XM_043238628.1 mRNA upstream 2944 7105673 ~ 7109832 (-) True ccn1l1
XM_043238989.1 mRNA upstream 18680 7121409 ~ 7123998 (-) True rpl12
XM_043238990.1 mRNA upstream 18680 7121409 ~ 7123873 (-) False rpl12
XM_043238992.1 mRNA upstream 31349 7134078 ~ 7141495 (-) True fkbp15a
XM_043240178.1 mRNA upstream 38900 7141629 ~ 7148537 (-) False crata
XR_006251012.1 other downstream 146962 6930872 ~ 6943203 (-) False usp20
XR_006251011.1 other downstream 146973 6923430 ~ 6943192 (-) True usp20
TU49743 other downstream 263983 6824171 ~ 6826182 (-) True G33758
unassigned_transcript_954 other downstream 1133794 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 1658771 5431264 ~ 5431394 (-) True LOC122346225
XR_006251117.1 other upstream 18993 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 19610 7122339 ~ 7122464 (-) True LOC122346223
TU50081 other upstream 279617 7382346 ~ 7397153 (-) True G33998
TU50440 other upstream 616967 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50633 other upstream 1309153 8411882 ~ 8414806 (-) True G34372

Expression Profile