RNA id: XM_043240923.1


Basic Information

Item Value
RNA id XM_043240923.1
length 1619
RNA type mRNA
GC content 0.42
exon number 5
gene id gltpa
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5843678 ~ 5849639 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGTCCAGCTGTGCGGCGCAGCGCGAGAAGAAGAAGTGATTGTATGCCGTCTGTCGGTCCCGCGGTAGTTCCGGGTTCTGTCTTCGCTGCCTCCGCGTTGTCCTCGTCTTATGttgtaggcaaaaaaaaaaaaaaaaagtcactttagCCCTCTTTAGGCGACCATGGCTCTTCTAATGGAGCACCAGTTCCGGCAACTTCCAGCCGACAAACAAGTGGAAACCCGGCCGTTTCTCGAGGCGGTTTCTCACCTTCCTCCTTTCTTCGATTGCCTCGGCTCTgctgttttttcccccatcaAAGCTGATATCGCGGGTAACATCACTAAAATCAAGGCCGTGTATGACAGCAACCCTACCAGGTTTAAAACCTTGCAACACATTTTGGAAGCAGAGAAGGAGATGCATGGAGCCGAGTGGCCAAAAGTTGGAGCAACACTTGCCCTCATGTGGCTGAAAAGGGGGCTACGCTTTATCCAGGTTCTTCTCCAGAGCCTAGTGGATGGGGATAAAGACGAAAACAACCCTAATCTCATCAGAGTCAACGTCACCAAAGCGTATGAAATGGCACTGAAGAAGTATCATGGCTGGTTTGTCCAGAAGCTCTTTAAAgcagcGCTATACGCCGCTCCTTACAGATCAGATTTTCTCAAAGCTCTTTCTAAAGGCCGAGAGGTCAAGGAGGAAGAATGCTTGGACAAAGTGCGGCAGTTCCTAGTAAACTTCACAGCTACGATCGACGCCATCTATGAAATGTACACCAAGATGAATGCAGAGCTGGACTACACTGTGTGATCTCACATTCACGGGCGAGCAAACTTCAGACCTCATCTACTGCTGTCCCGCTGGATCTCTGTTGCCTCCCTGTAGACGTCTCCTTAGTCTCCGCTCTTATCTCGTACTGGATCCTGCGTCTCTGGCAGTGTACCGCCGCGTTTTCTCTCGGGGAACAATTAAGGTCCTGGCTGCTGAAGACTTTGGTGGATTTGGAAGGGAAGGATGTGTGTTATTTGTTCTGCTCGTGTTGACTGTTTGAATGCTTTGGCTTTTCTTTAGAAAAGACGGTTTGCGagtgtttttttataactttaacTACTAATCATTTCTCTTTGATTCTCGATACATGCACTTTAAGTCTGTGTATGGAATGGCTCTGTATGTGTTCCTTTAATAATGTATTGCAAATGAgggttttctttttactttttaattataccAAAACAAACGTCTACAAGACTGTCTAACCAAATATCTGACATTGACTGTACTGCTGTTAGTTTTTACTCTGAATTctattttatgacaaaaaaaaatacttgaatgtgacatgaaatataaaagaaaccACTTCCTCAGAAGCGATAATGAAGCCACTACATTAAGTGGTGAAACGgtaaataatttcttaataaaaattTGTTTCAATAAGGACTTCTTAAGACTGTAATGAAAAACTGTGAATCTTCATAGACGTAATTGGTCTGATGTTTTGTTGATGTAATGTAGTGGATGagtattgtttgtttgtagggtttttttttttttttttttttgtcattcctGAATGTTGATTTCATTCAAACtgctttttagaaataaatgttaatttatggaAATAA

Function

GO:

id name namespace
GO:0046836 glycolipid transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0017089 glycolipid transfer activity molecular_function
GO:0051861 glycolipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49258 lncRNA downstream 159394 5679683 ~ 5684284 (-) True G33446
TU49238 lncRNA downstream 188914 5654080 ~ 5654764 (-) True G33434
TU49227 lncRNA downstream 222973 5618265 ~ 5620705 (-) True G33423
TU49226 lncRNA downstream 222973 5619617 ~ 5620705 (-) False G33423
TU49210 lncRNA downstream 241474 5601409 ~ 5602204 (-) True G33409
TU49417 lncRNA upstream 46489 5896128 ~ 5897353 (-) True G33533
TU49427 lncRNA upstream 96350 5945989 ~ 5946874 (-) True G33542
TU49429 lncRNA upstream 103637 5953276 ~ 5959213 (-) True G33544
TU49440 lncRNA upstream 119603 5969242 ~ 5982803 (-) False G33549
TU49443 lncRNA upstream 121109 5970748 ~ 5982803 (-) False G33549
XM_043239673.1 mRNA downstream 681 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA downstream 683 5820352 ~ 5842995 (-) True trpv4
XM_043239675.1 mRNA downstream 685 5820352 ~ 5842993 (-) False trpv4
XM_043238430.1 mRNA downstream 172549 5668793 ~ 5671129 (-) True mmab
XM_043238673.1 mRNA downstream 190649 5648255 ~ 5653029 (-) True kctd10
XM_043240904.1 mRNA upstream 9640 5859279 ~ 5884164 (-) True git2a
XM_043238326.1 mRNA upstream 49256 5898895 ~ 5909991 (-) True slc6a4b
XM_043238540.1 mRNA upstream 237162 6086801 ~ 6089556 (-) True foxd1
XM_043239784.1 mRNA upstream 246518 6096157 ~ 6099701 (-) False ankra2
XM_043239783.1 mRNA upstream 246518 6096157 ~ 6099666 (-) True ankra2
XR_006251120.1 other downstream 412284 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1220620 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1650597 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 106660 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 974532 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1073791 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1081233 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1272083 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile